Difference between revisions of "Os04g0550600"

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(Created page with "{{JaponicaGene| GeneName = Os04g0550600| Description = Carotenoid oxygenase family protein| Version = NM_001060026.1 GI:115459781 GeneID:4336591| Length = 2626 bp| Defini...")
 
(Gene Symbol)
 
(10 intermediate revisions by 4 users not shown)
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{{JaponicaGene|
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The rice gene Os04g0550600 was reported as '''''d17''''' in 2008 by researchers from Japan<ref name="ref1" />.
GeneName = Os04g0550600|
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==Annotated Information==
Description = Carotenoid oxygenase family protein|
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===Gene Symbol===
Version = NM_001060026.1 GI:115459781 GeneID:4336591|
 
Length = 2626 bp|
 
Definition = Oryza sativa Japonica Group Os04g0550600, complete gene.|
 
Source = Oryza sativa Japonica Group
 
  
  ORGANISM Oryza sativa Japonica Group
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*'''''Os04g0550600''''' '''''<=>''''' '''''d17(t), dwf14, d17, htd1, OsCCD7, CCD7, D17/HTD1, HTD1, OsD17'''''
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
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            Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
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===Function===
            clade; Ehrhartoideae; Oryzeae; Oryza.
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|
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* '''''MAX3''''', '''''RMS5''''' and '''''HTD1/D17''''' encode CAROTENOID CLEAVAGE DIOXYGENASE 7 (CCD7).
Chromosome = [[:category:Japonica Chromosome 4|Chromosome 4]]|
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AP = Chromosome 4:27966328..27968953|
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* '''''D17''''' (CCD7) are required for the production of normal levels of strigolactones in rice seedlings. strigolactones act as a new hormone class—or their biosynthetic precursors—in regulating above-ground plant architecture, and also have a function in underground communication with other neighbouring organisms.
CDS = 27966355..27966746,27966833..27967191,27967287..27967415,27967504..27967635,27967748..27968020<br>,27968125..27968525,27968650..27968793|
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GCID = <gbrowseImage1>
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You can also add sub-section(s) at will.
name=NC_008397:27966328..27968953
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source=RiceChromosome04
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===Function===
preset=GeneLocation
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</gbrowseImage1>|
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* '''''MAX3''''', '''''RMS5''''' and '''''HTD1/D17''''' encode CAROTENOID CLEAVAGE DIOXYGENASE 7 (CCD7).
GSID = <gbrowseImage2>
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name=NC_008397:27966328..27968953
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* '''''D17''''' (CCD7) are required for the production of normal levels of strigolactones in rice seedlings. strigolactones act as a new hormone class—or their biosynthetic precursors—in regulating above-ground plant architecture, and also have a function in underground communication with other neighbouring organisms.
source=RiceChromosome04
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preset=GeneLocation
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You can also add sub-section(s) at will.
</gbrowseImage2>|
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CDNA = <cdnaseq>atggcaacacaagcgattgcaccgatgcacgccgccgtcgtgcaccgccaccacgttctaccaccccgccgctgcgtgcgccgccgtggcgtcttcgtccgcgcctcggccgccgccgccgccgccgccgccgagacggacacgctgtccgcggccttctgggactacaacctcctcttccggtcgcagcgcgacgagtgcctcgactccatcccgctccgcgtcaccgagggcgcgatcccgcccgacttcccggccggcacctactacctcgccgggccgggcatcttctccgacgaccacggctccaccgtccaccccctcgacggccacggctacctccgctccttccgcttccggcccggcgaccgcaccatccactactccgcgcggttcgtggagacggcggcgaagagggaggagagccgggacggcgcgtcgtggcggttcacgcaccgggggcccttctccgtgctgcagggcgggaagaaggtgggcaatgtgaaggtgatgaagaacgtggccaacaccagcgtgctgcggtggggcggccggctgctctgcctctgggagggcggccagccgtacgaggttgacccccggacgctcgagaccgtcggcccgttcgacctgctcggcctcgccgccgccgacgacaacaaggcaacgaacgcgtctgcagcacgacggccgtggctgcaggaggccggcctcgacgccgccgcgcgcctgctgcgccctgttcttagcggggtgttcgacatgccgggcaagaggctgctggcgcactacaagatcgacccgcggcgggggcgtctgctgatggtcgcctgcaacgccgaggacatgctcctcccgcgatcccacttcactttctacgagttcgacgcccacttcgacctcgtccagaagcgtgagttcgtcgtgccggaccacctcatgatccacgactgggccttcaccgacacccactacatcctcctcggcaacaggatcaagctcgacatccccggatcgctgctggcattgacgggcactcacccgatgatcgcggcgctggccgtggacccgagaaggcagtcgacgccggtgtacctgcttccgcgctccccggagaccgaggcgggcggccgcgactggagcgtgccgatcgaggcgccgtcgcagatgtggtccgtgcacgtcggcaacgcgttcgaggaggcgaaccgccggggcggcctcgacgtccggctgcacatgtcaagctgctcctaccagtggttccatttccacaggatgtttggttacaattggcaccacaagaagctggacccgtcgttcatgaacgcggcgaagggaaaggagtggctgcctcgcctcgttcaggtggccatcgagctcgacaggacgggagagtgccggaggtgctcagtcaggaggctgtccgatcagcacgccaggccggcggacttcccggcgataaacccaagctacgccaaccagaggaaccggttcgtctacgccggcgccgcgtccggctcccgcagattcctcccgtacttcccgttcgacagcgtggtgaaggtcgacgtctccgatggatcggcgcggtggtggtctaccgacgggcgcaagttcgtcggcgagccggtcttcgtcccgaccggcggcggagaggatggtggctatgttcttcttgtagagtatgcagtctccaagcacagatgccatctagtggtgctggatgcaaagaagatagggacagagaatgcacttgtggcaaaactagaggtgccaaagaacctcacttttccaatgggattccatggtttctggggagatgaatga</cdnaseq>|
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==Labs working on this gene==
AA = <aaseq>MATQAIAPMHAAVVHRHHVLPPRRCVRRRGVFVRASAAAAAAAA                    ETDTLSAAFWDYNLLFRSQRDECLDSIPLRVTEGAIPPDFPAGTYYLAGPGIFSDDHG                    STVHPLDGHGYLRSFRFRPGDRTIHYSARFVETAAKREESRDGASWRFTHRGPFSVLQ                    GGKKVGNVKVMKNVANTSVLRWGGRLLCLWEGGQPYEVDPRTLETVGPFDLLGLAAAD                    DNKATNASAARRPWLQEAGLDAAARLLRPVLSGVFDMPGKRLLAHYKIDPRRGRLLMV                    ACNAEDMLLPRSHFTFYEFDAHFDLVQKREFVVPDHLMIHDWAFTDTHYILLGNRIKL                    DIPGSLLALTGTHPMIAALAVDPRRQSTPVYLLPRSPETEAGGRDWSVPIEAPSQMWS                    VHVGNAFEEANRRGGLDVRLHMSSCSYQWFHFHRMFGYNWHHKKLDPSFMNAAKGKEW                    LPRLVQVAIELDRTGECRRCSVRRLSDQHARPADFPAINPSYANQRNRFVYAGAASGS                    RRFLPYFPFDSVVKVDVSDGSARWWSTDGRKFVGEPVFVPTGGGEDGGYVLLVEYAVS                    KHRCHLVVLDAKKIGTENALVAKLEVPKNLTFPMGFHGFWGDE</aaseq>|
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* RIKEN Plant Science Center, Tsurumi, Yokohama 230-0045, Japan.  
DNA = <dnaseqindica>28..419#506..864#960..1088#1177..1308#1421..1693#1798..2198#2323..2466#aacgaccgaaggaggccaagtccaaagatggcaacacaagcgattgcaccgatgcacgccgccgtcgtgcaccgccaccacgttctaccaccccgccgctgcgtgcgccgccgtggcgtcttcgtccgcgcctcggccgccgccgccgccgccgccgccgagacggacacgctgtccgcggccttctgggactacaacctcctcttccggtcgcagcgcgacgagtgcctcgactccatcccgctccgcgtcaccgagggcgcgatcccgcccgacttcccggccggcacctactacctcgccgggccgggcatcttctccgacgaccacggctccaccgtccaccccctcgacggccacggctacctccgctccttccgcttccggcccggcgaccgcaccatccactactccgcgcggtaagtcgcgccgcgcgcatgcagcagcagcaggtttgtcagtgagagcgacagactgacagtgcacgcgtgagtgacgcatgcaggttcgtggagacggcggcgaagagggaggagagccgggacggcgcgtcgtggcggttcacgcaccgggggcccttctccgtgctgcagggcgggaagaaggtgggcaatgtgaaggtgatgaagaacgtggccaacaccagcgtgctgcggtggggcggccggctgctctgcctctgggagggcggccagccgtacgaggttgacccccggacgctcgagaccgtcggcccgttcgacctgctcggcctcgccgccgccgacgacaacaaggcaacgaacgcgtctgcagcacgacggccgtggctgcaggaggccggcctcgacgccgccgcgcgcctgctgcgccctgttcttagcggtgcgtgacactgtaccggagcagcggcctccacttcgatcgattcggaccgaactgatatgacgctggtgcgcgcgtgcgtgcgtgcggtgcaggggtgttcgacatgccgggcaagaggctgctggcgcactacaagatcgacccgcggcgggggcgtctgctgatggtcgcctgcaacgccgaggacatgctcctcccgcgatcccacttcactttctacggtcagctcgccatcgcctcgaccaaccacgcattttccattcgctcctccaaaaaaaaaaatcacattgaacggcgtttccatggcagagttcgacgcccacttcgacctcgtccagaagcgtgagttcgtcgtgccggaccacctcatgatccacgactgggccttcaccgacacccactacatcctcctcggcaacaggatcaagctcgacatccccggtaaggaagagaaaacaaaagaaaacttgtccatggaatgatggaatcgtgcgcgcactggcgtctgatgctgacgtttggtatgcttggttggtgccgtgttcgggcgtaggatcgctgctggcattgacgggcactcacccgatgatcgcggcgctggccgtggacccgagaaggcagtcgacgccggtgtacctgcttccgcgctccccggagaccgaggcgggcggccgcgactggagcgtgccgatcgaggcgccgtcgcagatgtggtccgtgcacgtcggcaacgcgttcgaggaggcgaaccgccggggcggcctcgacgtccggctgcacatgtcaagctgctcctaccagtggttccatttccacaggatgtttggtaaatttcaacgccacaaaaaaaaaaacagtaatccatatttgctcgttcttgcatttgcacattgctggaacacaacgatcatcgagtgatctgcatcacaggttacaattggcaccacaagaagctggacccgtcgttcatgaacgcggcgaagggaaaggagtggctgcctcgcctcgttcaggtggccatcgagctcgacaggacgggagagtgccggaggtgctcagtcaggaggctgtccgatcagcacgccaggccggcggacttcccggcgataaacccaagctacgccaaccagaggaaccggttcgtctacgccggcgccgcgtccggctcccgcagattcctcccgtacttcccgttcgacagcgtggtgaaggtcgacgtctccgatggatcggcgcggtggtggtctaccgacgggcgcaagttcgtcggcgagccggtcttcgtcccgaccggcggcggagaggatggtggctatgttcttcttgtagaggtaagacggagtgcccgttccatcaacatgaagtacgagtgttttgttttttcttaagatttagtacaaatgtttactactgaattaacatcaagacatgtgatgtctctttgcttcttgacagtatgcagtctccaagcacagatgccatctagtggtgctggatgcaaagaagatagggacagagaatgcacttgtggcaaaactagaggtgccaaagaacctcacttttccaatgggattccatggtttctggggagatgaatgagcatagagcaagcatcagatccagtctaactctggagagaaattgtcttgaaaaggcaagaattttgcctcgtgtattgataaaagagagttttgtgataatctgtacatggtggagaggaattatcaggggaaccaaataactactgtacatccagtct</dnaseqindica>|
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* Graduate School of Life and Environmental Sciences, Osaka Prefecture University, 1-1 Gakuencho, Naka-ku, Sakai, Osaka 599-8531, Japan.  
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001060026.1 RefSeq:Os04g0550600]|
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* Graduate School of Agricultural and Life Sciences, The University of Tokyo, Yayoi, Bunkyo, Tokyo 113-8652, Japan.  
}}
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* Weed Science Center, Utsunomiya University, Utsunomiya 321-8505, Japan.
[[Category:Genes]]
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[[Category:Japonica mRNA]]
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==References==
[[Category:Oryza Sativa Japonica Group]]
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<references>
[[Category:Japonica Genes]]
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* <ref name="ref1">
[[Category:Japonica Chromosome 4]]
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Umehara M, Hanada A, Yoshida S, Akiyama K, Arite T, Takeda-Kamiya N, Magome H, Kamiya Y, Shirasu K, Yoneyama K, Kyozuka J, Yamaguchi S. Inhibition of shoot branching by new terpenoid plant hormones. Nature. 2008 Sep 11;455(7210):195-200. doi: 10.1038/nature07272. PubMed PMID: 18690207.
[[Category:Chromosome 4]]
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</ref>
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</references>
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==Structured Information==
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    [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 4]]

Latest revision as of 04:36, 9 October 2016

The rice gene Os04g0550600 was reported as d17 in 2008 by researchers from Japan[1].

Annotated Information

Gene Symbol

  • Os04g0550600 <=> d17(t), dwf14, d17, htd1, OsCCD7, CCD7, D17/HTD1, HTD1, OsD17

Function

  • MAX3, RMS5 and HTD1/D17 encode CAROTENOID CLEAVAGE DIOXYGENASE 7 (CCD7).
  • D17 (CCD7) are required for the production of normal levels of strigolactones in rice seedlings. strigolactones act as a new hormone class—or their biosynthetic precursors—in regulating above-ground plant architecture, and also have a function in underground communication with other neighbouring organisms.

You can also add sub-section(s) at will.

Function

  • MAX3, RMS5 and HTD1/D17 encode CAROTENOID CLEAVAGE DIOXYGENASE 7 (CCD7).
  • D17 (CCD7) are required for the production of normal levels of strigolactones in rice seedlings. strigolactones act as a new hormone class—or their biosynthetic precursors—in regulating above-ground plant architecture, and also have a function in underground communication with other neighbouring organisms.

You can also add sub-section(s) at will.

Labs working on this gene

  • RIKEN Plant Science Center, Tsurumi, Yokohama 230-0045, Japan.
  • Graduate School of Life and Environmental Sciences, Osaka Prefecture University, 1-1 Gakuencho, Naka-ku, Sakai, Osaka 599-8531, Japan.
  • Graduate School of Agricultural and Life Sciences, The University of Tokyo, Yayoi, Bunkyo, Tokyo 113-8652, Japan.
  • Weed Science Center, Utsunomiya University, Utsunomiya 321-8505, Japan.

References

  1. Umehara M, Hanada A, Yoshida S, Akiyama K, Arite T, Takeda-Kamiya N, Magome H, Kamiya Y, Shirasu K, Yoneyama K, Kyozuka J, Yamaguchi S. Inhibition of shoot branching by new terpenoid plant hormones. Nature. 2008 Sep 11;455(7210):195-200. doi: 10.1038/nature07272. PubMed PMID: 18690207.

Structured Information