Difference between revisions of "Os03g0693700"

From RiceWiki
Jump to: navigation, search
(Created page with "{{JaponicaGene| GeneName = Os03g0693700| Description = Similar to Oxalate oxidase 1 (EC 1.2.3.4) (Germin)| Version = NM_001057500.1 GI:115454728 GeneID:4333791| Length = 9...")
 
(→‎Phenotypic analysis)
 
(7 intermediate revisions by 3 users not shown)
Line 1: Line 1:
−
{{JaponicaGene|
+
The rice '''''Os03g0693700''''' was reported as '''''Osoxo4''''' in 2013 <ref name="ref1" /> by researchers from India and the USA.  
−
GeneName = Os03g0693700|
 
−
Description = Similar to Oxalate oxidase 1 (EC 1.2.3.4) (Germin)|
 
−
Version = NM_001057500.1 GI:115454728 GeneID:4333791|
 
−
Length = 997 bp|
 
−
Definition = Oryza sativa Japonica Group Os03g0693700, complete gene.|
 
−
Source = Oryza sativa Japonica Group
 
  
−
  ORGANISM  Oryza sativa Japonica Group
+
==Annotated Information==
−
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
+
===Gene Symbol===
−
            Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
+
*'''''Os03g0693700''''' '''<=>''' '''''Osoxo4,oxo4'''''
−
            clade; Ehrhartoideae; Oryzeae; Oryza.
+
===Phenotypic analysis===
−
|
+
* Overexpression of the '''''Osoxo4''''' gene in transgenic plants showed higher enzyme activity of oxalate oxidase (OxO) than nontransgenic control plants, which was visualized by histochemical assays and sodium dodecylsulphate-polyacrylamide gel electrophoresis (SDS-PAGE).
−
Chromosome = [[:category:Japonica Chromosome 3|Chromosome 3]]|
+
* Transgenic rice leaves were more tolerant than control rice leaves to exogenous OA. Transgenic plants showed a higher level of expression of other defence-related genes in response to pathogen infection.
−
AP = Chromosome 3:28539529..28540525|
+
* More importantly, transgenic plants exhibited significantly enhanced durable resistance to R. solani. The overexpression of Osoxo4 in rice did not show any detrimental phenotypic or agronomic effect.
−
CDS = 28539717..28540400|
+
* The transgenic Osoxo4-overexpressing rice lines and nontrans-genic control plants were subjected to bioassay with a virulent Hyderabad isolate of R. solani AG1-1A. The transgenic lines showed an increased level of sheath blight resistance, as demon- strated by a low sheath blight score in comparison with nontransgenic control plants.
−
GCID = <gbrowseImage1>
+
 
−
name=NC_008396:28539529..28540525
+
 
−
source=RiceChromosome03
+
[[File:26-Os03g0693700.png|center|thumb|720px|'''Figure 7.''' ''Overexpression of rice oxalate oxidase 4 (Osoxo4) enhances resistance against the sheath blight pathogen Rhizoctonia solani<ref name="ref1" />.'']]
−
preset=GeneLocation
+
 
−
</gbrowseImage1>|
+
 
−
GSID = <gbrowseImage2>
+
You can also add sub-section(s) at will.
−
name=NC_008396:28539529..28540525
+
 
−
source=RiceChromosome03
+
==Labs working on this gene==
−
preset=GeneLocation
+
* Plant Molecular Biology and Biotechnology Laboratory, Department of Botany, University of Calcutta, 35, Ballygunge Circular Road, Kolkata 700019, India
−
</gbrowseImage2>|
+
* Center for Diabetes Research, The Methodist Hospital Research Institute, 6670 Bertner, Houston, TX 77030, USA
−
CDNA = <cdnaseq>atggagtgcttcaaaactaccctagctggggtggtgctcgtcgtgctgctcctgcagcaggcgccggtgctacgggccaacgaccctgaccctctccaagacttctgcgtcgccgacctcgacagcgaggtgacgttgaacgggtacccgtgcaagcccacgccggcggccggcgacgagttcctcttctcctccaggttagccacgggcggcgacgtgaacgccaaccccaacggctccaacgtcacgcagctcgacgtcgcggggtggcccggggtgaacacgctcggcgtgtccatgaaccgcatcgacttcgcgcccggcggcaccaacccgccgcacgtccacccgcgcgccaccgaggtcggcatcgtgctacgcggcgagctcctcgtcggcatcatcggcagcctcgacaccgggaacaggtactactccagggtggtccgcggcggcgagacgttcgtcatcccgcgggggctcatgcacttccagttcaacgtcggcaagacggaggccaccatggtggtgtccttcaacagccagaaccctggcatcgtcttcgtcccgctcacattgttcggctccaacccacccatcccgacgccggtgctcgtcaaggcgctccgggtggacgccggcgtcgtcgagctgcttaagtccaagttcaccggtgggtactga</cdnaseq>|
+
* Division of Crop Science, Indian Council of Agricultural Research (ICAR), Krishi Bhavan, Dr. Rajendra Prasad Road, New Delhi 110001, India
−
AA = <aaseq>MECFKTTLAGVVLVVLLLQQAPVLRANDPDPLQDFCVADLDSEV                    TLNGYPCKPTPAAGDEFLFSSRLATGGDVNANPNGSNVTQLDVAGWPGVNTLGVSMNR                    IDFAPGGTNPPHVHPRATEVGIVLRGELLVGIIGSLDTGNRYYSRVVRGGETFVIPRG                    LMHFQFNVGKTEATMVVSFNSQNPGIVFVPLTLFGSNPPIPTPVLVKALRVDAGVVEL                    LKSKFTGGY</aaseq>|
+
==References==
−
DNA = <dnaseqindica>126..809#acccaattagcaaagtagcttctatactactgcctctgccaggtgccatttcattactcaaagaaattgagccgagacctgaggaacatatacaagaattggctagctttgctcgttgattagcaatggagtgcttcaaaactaccctagctggggtggtgctcgtcgtgctgctcctgcagcaggcgccggtgctacgggccaacgaccctgaccctctccaagacttctgcgtcgccgacctcgacagcgaggtgacgttgaacgggtacccgtgcaagcccacgccggcggccggcgacgagttcctcttctcctccaggttagccacgggcggcgacgtgaacgccaaccccaacggctccaacgtcacgcagctcgacgtcgcggggtggcccggggtgaacacgctcggcgtgtccatgaaccgcatcgacttcgcgcccggcggcaccaacccgccgcacgtccacccgcgcgccaccgaggtcggcatcgtgctacgcggcgagctcctcgtcggcatcatcggcagcctcgacaccgggaacaggtactactccagggtggtccgcggcggcgagacgttcgtcatcccgcgggggctcatgcacttccagttcaacgtcggcaagacggaggccaccatggtggtgtccttcaacagccagaaccctggcatcgtcttcgtcccgctcacattgttcggctccaacccacccatcccgacgccggtgctcgtcaaggcgctccgggtggacgccggcgtcgtcgagctgcttaagtccaagttcaccggtgggtactgatctgacgatccgagagtattcttacgcggatctaggtctctgctactatagttgtgcgcagtgtatgttatttgattgaataaacttgtcgtcgccatcgcaggccacgaatgaaactaaaatgtattactactgctttcttgtgcttttccccttctaaataaactatacataaatggtattttggt</dnaseqindica>|
+
<references>
−
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001057500.1 RefSeq:Os03g0693700]|
+
* <ref name="ref1">
−
}}
+
Molla KA, Karmakar S, Chanda PK, Ghosh S, Sarkar SN, Datta SK, Datta K. Rice
−
[[Category:Genes]]
+
oxalate oxidase gene driven by green tissue-specific promoter increases tolerance
−
[[Category:Japonica mRNA]]
+
to sheath blight pathogen (Rhizoctonia solani) in transgenic rice. Mol Plant
−
[[Category:Oryza Sativa Japonica Group]]
+
Pathol. 2013 Dec;14(9):910-22. doi: 10.1111/mpp.12055. Epub 2013 Jul 1. PubMed
−
[[Category:Japonica Genes]]
+
PMID: 23809026.
−
[[Category:Japonica Chromosome 3]]
+
</ref>
−
[[Category:Chromosome 3]]
+
</references>
 +
 
 +
==Structured Information==
 +
    [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 3]]

Latest revision as of 09:02, 9 October 2016

The rice Os03g0693700 was reported as Osoxo4 in 2013 [1] by researchers from India and the USA.

Annotated Information

Gene Symbol

  • Os03g0693700 <=> Osoxo4,oxo4

Phenotypic analysis

  • Overexpression of the Osoxo4 gene in transgenic plants showed higher enzyme activity of oxalate oxidase (OxO) than nontransgenic control plants, which was visualized by histochemical assays and sodium dodecylsulphate-polyacrylamide gel electrophoresis (SDS-PAGE).
  • Transgenic rice leaves were more tolerant than control rice leaves to exogenous OA. Transgenic plants showed a higher level of expression of other defence-related genes in response to pathogen infection.
  • More importantly, transgenic plants exhibited significantly enhanced durable resistance to R. solani. The overexpression of Osoxo4 in rice did not show any detrimental phenotypic or agronomic effect.
  • The transgenic Osoxo4-overexpressing rice lines and nontrans-genic control plants were subjected to bioassay with a virulent Hyderabad isolate of R. solani AG1-1A. The transgenic lines showed an increased level of sheath blight resistance, as demon- strated by a low sheath blight score in comparison with nontransgenic control plants.


Figure 7. Overexpression of rice oxalate oxidase 4 (Osoxo4) enhances resistance against the sheath blight pathogen Rhizoctonia solani[1].


You can also add sub-section(s) at will.

Labs working on this gene

  • Plant Molecular Biology and Biotechnology Laboratory, Department of Botany, University of Calcutta, 35, Ballygunge Circular Road, Kolkata 700019, India
  • Center for Diabetes Research, The Methodist Hospital Research Institute, 6670 Bertner, Houston, TX 77030, USA
  • Division of Crop Science, Indian Council of Agricultural Research (ICAR), Krishi Bhavan, Dr. Rajendra Prasad Road, New Delhi 110001, India

References

  1. ↑ 1.0 1.1 Molla KA, Karmakar S, Chanda PK, Ghosh S, Sarkar SN, Datta SK, Datta K. Rice oxalate oxidase gene driven by green tissue-specific promoter increases tolerance to sheath blight pathogen (Rhizoctonia solani) in transgenic rice. Mol Plant Pathol. 2013 Dec;14(9):910-22. doi: 10.1111/mpp.12055. Epub 2013 Jul 1. PubMed PMID: 23809026.

Structured Information