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| − | {{JaponicaGene|
| + | The rice gene Os04g0611800 was reported as '''''osks1''''' in 2004<ref name="ref1" /> by researchers from Japan. |
| − | GeneName = Os04g0611800|
| + | ==Annotated Information== |
| − | Description = Terpenoid cylases/protein prenyltransferase alpha-alpha toroid domain containing protein|
| + | ===Gene Symbol=== |
| − | Version = NM_001060376.1 GI:115460481 GeneID:4336960|
| + | *'''''Os04g0611800 <=> OsKS1, KS1, KS1A, KSL1, OsKSL1, OsKS1A, OsKS1B, OsKS1C, Ks1, Os KS1, OsTPS26 |
| − | Length = 3693 bp|
| + | ===Function=== |
| − | Definition = Oryza sativa Japonica Group Os04g0611800, complete gene.|
| + | * '''''OsKS1''''' encodes KS protein which is the major enzymes involved in the early steps of GA biosynthesis. |
| − | Source = Oryza sativa Japonica Group
| + | * Although several CPS-like and KS-like genes were identified in rice, GA biosynthesis depends on only '''''OsCPS1''''' and '''''OsKS1'''''. |
| | + | ===Expression=== |
| | + | * '''''OsKS1''''' was broadly expressed in all the organs of wild-type rice that the researchers tested, including vegetative shoot apices, leaf sheaths, leaf blades, elongating stems, roots, immature panicles, and panicles at flowering time, whereas the levels of OsKS1 in roots was lower than those in other organs. |
| | | | |
| − | ORGANISM Oryza sativa Japonica Group
| + | ===Evolution=== |
| − | Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
| + | [[File:Os04g0611800-1.png|right|thumb|200px|'''Figure 3. GA metabolic Cyt P450-dependent monooxygenases KO and KAO''' '' <ref name="ref1" />.'']] |
| − | Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
| + | |
| − | clade; Ehrhartoideae; Oryzeae; Oryza.
| + | * OsKS1 showed highest similarity to Arabidopsis AtKS/GA2 (43% identity), whereas the other OsKS proteins showed between 37% and 41% identities with the Arabidopsis protein. OsKS1-4 and OsKS7 were more closely related to maize (Zea mays) ZmKS (49%–54% identities), whereas OsKS5, OsKS6, and OsKS8 constituted another group (39%–43% identities with ZmKS; Fig. 3). |
| − | |
| + | You can also add sub-section(s) at will. |
| − | Chromosome = [[:category:Japonica Chromosome 4|Chromosome 4]]|
| + | |
| − | AP = Chromosome 4:31425877..31429569|
| + | ==Labs working on this gene== |
| − | CDS = 31425877..31426168,31426278..31426458,31426766..31426983,31427070..31427190,31427258..31427355<br>,31427478..31427692,31427772..31427884,31427964..31428059,31428148..31428363<br>,31428474..31428612,31428704..31428949,31429222..31429557|
| + | * Field Production Science Center, University of Tokyo, Nishi-Tokyo, Tokyo 188–0002, Japan (T.S.); |
| − | GCID = <gbrowseImage1>
| + | * Bioscience and Biotechnology Center, Nagoya University, Nagoya, Aichi 464–8601, Japan (K.M., H.I., T.T., M.U.-T., H.K., M.A., M.M.); |
| − | name=NC_008397:31425877..31429569
| + | * BioResource Center, RIKEN Tsukuba Institute, Tsukuba, Ibaraki 305–0074, Japan (K.I., M.K.); |
| − | source=RiceChromosome04
| + | * Molecular Genetics Department, National Institute of Agrobiological Sciences, Tsukuba, Ibaraki 305–8602, Japan (G.K.A., S.T., K.A., A.M., H.H.) |
| − | preset=GeneLocation
| + | |
| − | </gbrowseImage1>|
| + | ==References== |
| − | GSID = <gbrowseImage2>
| + | <references> |
| − | name=NC_008397:31425877..31429569
| + | * <ref name="ref1"> |
| − | source=RiceChromosome04
| + | Sakamoto T, Miura K, Itoh H, Tatsumi T, Ueguchi-Tanaka M, Ishiyama K, Kobayashi M, Agrawal GK, Takeda S, Abe K, Miyao A, Hirochika H, Kitano H, Ashikari M, Matsuoka M. An overview of gibberellin metabolism enzyme genes and their related mutants in rice. Plant Physiol. 2004 Apr;134(4):1642-53. Epub 2004 Apr 9. Erratum in: Plant Physiol.2004 Jul;135(3):1863. PubMed PMID: 15075394; PubMed Central PMCID: PMC419838. |
| − | preset=GeneLocation
| + | |
| − | </gbrowseImage2>| | + | </ref> |
| − | CDNA = <cdnaseq>atgcagcacaggaaggagctccaggcaaggacaagggaccagctccagacattggagttatctacgtctttgtacgacacggcgtgggtggccatggtgccactgcggggttcccgtcagcatccgtgtttcccacaatgcgtggagtggatattacaaaaccagcaggatgatggatcttggggtacaagaggattcggcgtggcggtcacaagagatgttctgtcgtctacgttggcgtgtgttcttgcactcaagagatggaatgttgggcaggagcacatcaggagaggactagattttattggaaggaatttctccattgccatggatgagcagattgctgctcctgttggtttcaacatcacttttcctggtatgcttagccttgccatggggatggatttagaattccctgtcagacagacggatgttgatagacttcttcacctccgggagatagaactggaaagagaggctggagaccattcttatggaagaaaggcatatatggcttatgtcacagaaggattaggaaacctgttggagtgggatgagattatgatgttccagaggaagaatggatcatttttcaactgtccttccacaactgctgccacattagtcaaccactataacgataaagccctccagtacttaaattgtctggttagtaaatttggcagtgcagtaccaacagtgtatccactaaacatatattgtcagctttcatgggtggatgcacttgaaaagatgggaatttctcagtattttgtcagtgagataaagagcatcctagacacaacatacgtttcatggttagaaagagatgaggaaattatgctggacataacaacatgtgcaatggcttttcgcctgttaaggatgaatgggtatcatgtttcctcagtcgagttatctcctgttgctgaagcttccagtttccgtgaatcacttcaaggatatttaaatgataagaaatctctaatcgaattatacaaggcttcaaaagtcagtaaatcagaaaatgaatcaatcttagatagcataggctcttggtcaggtagcttattgaaggaaagtgtgtgctctaatggggtgaaaaaagctccaatctttgaagagatgaagtatgctcttaagtttcccttctacaccacactggaccgtctagatcacaagaggaacattgaacgttttgatgcaaaggattcccagatgttaaagacggaatacttgcttcctcatgccaatcaagatattctagctttggctgttgaagatttcagtagttctcaatctatataccaggatgaacttaattatcttgagtgttgggtgaaagatgaaaagctcgatcagctgccatttgcacgccagaagttgacatattgctacctttctgctgctgctaccatattcccccgtgaattgtctgaagcccgcattgcatgggctaaaaatggtgtactgacaactgttgttgatgacttctttgatcttgggggatcaaaagaagaactagaaaacctcattgctttagttgagaagtgggatggacatcaagaggagttctactcagaacaagtaagaatagttttttctgctatttatactacagtgaaccagcttggagcaaaggcttctgcattacaaggccgtgatgttacaaaacacctaacagaaatatggttatgtctgatgaggtctatgatgaccgaagctgaatggcagaggacaaaatatgtgccgacaatggaagaatatatggcaaatgctgttgtctcatttgcactgggacctattgtgctcccgactctgtatttcgtaggaccgaagctccaagaggatgtcgtcagggatcatgagtacaatgaattatttagactgatgagcacttgtgggcgtctcctgaatgacagccaaggctttgagagggagagcctggagggaaagctgaacagtgtctcactgcttgttcatcacagtggtggttctatctccatagacgaggctaaaatgaaagcccagaaatccatagacacttccaggaggaacttgttaagattggtccttggagaacagggtgctgttcctaggccatgcaagcagctgttctggaagatgtgcaagattgttcacatgttctactctcggactgatgggtttagctcgccgaaggaaatggttagtgcagtgaatgcagtcgtcaaggagccacttaaactcaaagtgagtgatccatatggctctattttgtcgggcaattga</cdnaseq>|
| + | </references> |
| − | AA = <aaseq>MQHRKELQARTRDQLQTLELSTSLYDTAWVAMVPLRGSRQHPCF PQCVEWILQNQQDDGSWGTRGFGVAVTRDVLSSTLACVLALKRWNVGQEHIRRGLDFI GRNFSIAMDEQIAAPVGFNITFPGMLSLAMGMDLEFPVRQTDVDRLLHLREIELEREA GDHSYGRKAYMAYVTEGLGNLLEWDEIMMFQRKNGSFFNCPSTTAATLVNHYNDKALQ YLNCLVSKFGSAVPTVYPLNIYCQLSWVDALEKMGISQYFVSEIKSILDTTYVSWLER DEEIMLDITTCAMAFRLLRMNGYHVSSVELSPVAEASSFRESLQGYLNDKKSLIELYK ASKVSKSENESILDSIGSWSGSLLKESVCSNGVKKAPIFEEMKYALKFPFYTTLDRLD HKRNIERFDAKDSQMLKTEYLLPHANQDILALAVEDFSSSQSIYQDELNYLECWVKDE KLDQLPFARQKLTYCYLSAAATIFPRELSEARIAWAKNGVLTTVVDDFFDLGGSKEEL ENLIALVEKWDGHQEEFYSEQVRIVFSAIYTTVNQLGAKASALQGRDVTKHLTEIWLC LMRSMMTEAEWQRTKYVPTMEEYMANAVVSFALGPIVLPTLYFVGPKLQEDVVRDHEY NELFRLMSTCGRLLNDSQGFERESLEGKLNSVSLLVHHSGGSISIDEAKMKAQKSIDT SRRNLLRLVLGEQGAVPRPCKQLFWKMCKIVHMFYSRTDGFSSPKEMVSAVNAVVKEP LKLKVSDPYGSILSGN</aaseq>|
| + | |
| − | DNA = <dnaseqindica>1..292#402..582#890..1107#1194..1314#1382..1479#1602..1816#1896..2008#2088..2183#2272..2487#2598..2736#2828..3073#3346..3681#atgcagcacaggaaggagctccaggcaaggacaagggaccagctccagacattggagttatctacgtctttgtacgacacggcgtgggtggccatggtgccactgcggggttcccgtcagcatccgtgtttcccacaatgcgtggagtggatattacaaaaccagcaggatgatggatcttggggtacaagaggattcggcgtggcggtcacaagagatgttctgtcgtctacgttggcgtgtgttcttgcactcaagagatggaatgttgggcaggagcacatcaggagaggtacaaacgactgtgcatttacctgtcgatgtttgttttaattgactctgtatgtatctacacatttaaggcttggaatgtcttaacgctatgaaaatggtactgtcaggactagattttattggaaggaatttctccattgccatggatgagcagattgctgctcctgttggtttcaacatcacttttcctggtatgcttagccttgccatggggatggatttagaattccctgtcagacagacggatgttgatagacttcttcacctccgggagatagaactggaaaggtctgttaattctaacacgaacatggatattgtatgtcattagtatttgtattactgttgttacgagtatgtaaagttagtatgcaagggttgattgtgtggatgaagttttaccatcaggcgttctaaaaataactgtcagcttagttttattccctagttccccctgcattctttttgaaggaaggaatataatgaccttctcctctctttttttccaagatcctatatttggaggaaatgatcaatctcggttttaatagtgcctatgagtaacgcactgaaaatctgatatgattaaatgcagagaggctggagaccattcttatggaagaaaggcatatatggcttatgtcacagaaggattaggaaacctgttggagtgggatgagattatgatgttccagaggaagaatggatcatttttcaactgtccttccacaactgctgccacattagtcaaccactataacgataaagccctccagtacttaaattgtctggttagtaaatttggcagtgcaggtgagtctgcacgcattttcttgtcaagaactttctacagtgtagactgctcctaaatacatagtaatacatttggtccattgcagtaccaacagtgtatccactaaacatatattgtcagctttcatgggtggatgcacttgaaaagatgggaatttctcagtattttgtcagtgagataaagagcatcctagacacaacatacgtgtaatgactttgagtaagtattttatctatctttaatagttcaaacttaattttagctagtttgcagttcatggttagaaagagatgaggaaattatgctggacataacaacatgtgcaatggcttttcgcctgttaaggatgaatgggtatcatgtttcctcaggtgtgttctaaggcttgaaaggaatattttttttgttggtttcgaactatattctacctttggttttcatttaacatgctgaattattttttatttaacatgctaatttaaatgcggtgcagtcgagttatctcctgttgctgaagcttccagtttccgtgaatcacttcaaggatatttaaatgataagaaatctctaatcgaattatacaaggcttcaaaagtcagtaaatcagaaaatgaatcaatcttagatagcataggctcttggtcaggtagcttattgaaggaaagtgtgtgctctaatggggtgaaaaaagctccaatctttgaagaggtgcttgcatgaagttttgaatttccatttcattcggaagttcattttgtgtttaagtatatgccttttgtgatttcagatgaagtatgctcttaagtttcccttctacaccacactggaccgtctagatcacaagaggaacattgaacgttttgatgcaaaggattcccagatgttaaagacggaatacttgtaaggttttcattgaaaaggtctgccaatctgagtaatatatatgttaggcaccaattccactatgttgtttactcaggcttcctcatgccaatcaagatattctagctttggctgttgaagatttcagtagttctcaatctatataccaggatgaacttaattatcttgagtggtaggtaatccagcctgctgtcaatctgtcatgttatgctcctttattgtactaccttggataaattgcaaaattttgtttgcgacagttgggtgaaagatgaaaagctcgatcagctgccatttgcacgccagaagttgacatattgctacctttctgctgctgctaccatattcccccgtgaattgtctgaagcccgcattgcatgggctaaaaatggtgtactgacaactgttgttgatgacttctttgatcttgggggatcaaaagaagaactagaaaacctcattgctttagttgagaagtacgtacaatcctaattcattctattcgatctatttgtctggtcttttgtaagtggcgctggttatgcacagctaattcatcttctctgatttgcaaatggctgtctaggtgggatggacatcaagaggagttctactcagaacaagtaagaatagttttttctgctatttatactacagtgaaccagcttggagcaaaggcttctgcattacaaggccgtgatgttacaaaacacctaacagaaatagtgagtcccatctcatggttgatctattgattctgtggtgaatattgctctgttgcatagtgtttagtgataagctcaaactcatctgcagtggttatgtctgatgaggtctatgatgaccgaagctgaatggcagaggacaaaatatgtgccgacaatggaagaatatatggcaaatgctgttgtctcatttgcactgggacctattgtgctcccgactctgtatttcgtaggaccgaagctccaagaggatgtcgtcagggatcatgagtacaatgaattatttagactgatgagcacttgtgggcgtctcctgaatgacagccaaggctttgaggtacccggatccctttctgtgacaaacctccttgtattctcatatttctacaagatttagcatgtaaataaaattttcggttttacttgatgttatatgattgcagctatctcattctctgcccacaaatttgttgactaatctgtataaatgtgatactaattatgaacacttttatttttctgttgaaggattaggacgtggctacagttcgacccaactacccaaagcttgcaaacttattctaacaaataatttctctattgctgcagagggagagcctggagggaaagctgaacagtgtctcactgcttgttcatcacagtggtggttctatctccatagacgaggctaaaatgaaagcccagaaatccatagacacttccaggaggaacttgttaagattggtccttggagaacagggtgctgttcctaggccatgcaagcagctgttctggaagatgtgcaagattgttcacatgttctactctcggactgatgggtttagctcgccgaaggaaatggttagtgcagtgaatgcagtcgtcaaggagccacttaaactcaaagtgagtgatccatatggctctattttgtcgggcaattgagtgcttctccgt</dnaseqindica>|
| + | ==Structured Information== |
| − | Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001060376.1 RefSeq:Os04g0611800]|
| + | [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 4]] |
| − | }}
| |
| − | [[Category:Genes]] | |
| − | [[Category:Japonica mRNA]]
| |
| − | [[Category:Oryza Sativa Japonica Group]] | |
| − | [[Category:Japonica Genes]]
| |
| − | [[Category:Japonica Chromosome 4]] | |
| − | [[Category:Chromosome 4]]
| |
