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| − | Please input one-sentence summary here.
| + | The rice gene '''''Os04g0101800''''' was reported as '''''sor1''''' in 2013 <ref name="ref1" /> by researchers from Japan. |
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| | ==Annotated Information== | | ==Annotated Information== |
| | + | [[File:Os04g0101800.png|right|thumb|327px|'''Figure 1.''' ''Differences in rooting between the sor1 mutant (A, C, E, and G) and wild-type Nipponbare (B, D, F, and H).<ref name="ref1" />.'']] |
| | + | ===Gene Symbol=== |
| | + | *'''''Os04g0101800''''' '''<=>''' '''''OsSOR1,sor1''''' |
| | ===Function=== | | ===Function=== |
| − | Please input function information here.
| + | * '''''sor1''''' is a single recessive gene which can cause soil-surface rooting and altered root gravitropic response. |
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| − | ===Expression=== | + | ===Phenotypic analysis=== |
| − | Please input expression information here.
| + | * Under submerged conditions, the roots of all mutant plants elongated on or just below the soil surface in plant pots (Figure 1A); however, no wild-type Nipponbare plants (WT) had such roots during the seedling stage (Figure 1B). The cup method showed that mutant plants had many soil-surface roots (Figure 1C); however, WT had very few such roots (Figure 1D). |
| − | | + | * The glass tube method showed that mutant plants had many primary roots elongated on the upper side of the agar surface (Figure 1E); however, WT had no such roots (Figure 1F). |
| − | ===Evolution===
| + | * The basket method showed that mutant plants had many soil-surface roots (Figure 1G); however, WT had few soilsurface roots (Figure 1H). These results revealed that our mutant is a novel mutant for soil-surface rooting. |
| − | Please input evolution information here.
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| | You can also add sub-section(s) at will. | | You can also add sub-section(s) at will. |
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| | ==Labs working on this gene== | | ==Labs working on this gene== |
| − | Please input related labs here.
| + | * Graduate School of Life Sciences, Tohoku University, 2-1-1 Katahira, Aoba-ku, Sendai, Miyagi 980-8577, Japan |
| − | | + | * Plant Breeding, Genetics and Biotechnology Division, International Rice Research Institute, DAPO Box 7777, Metro Manila, Philippines. |
| | + | * Japan International Research Center for Agricultural Sciences, 1-1 Ohwashi, Tsukuba, Ibaraki 305-8686, Japan. |
| | + | * National Institute of Agrobiological Sciences, 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan. |
| | + | * Institute of Plant Science and Resources, Okayama University, 2-20-1, Kurashiki, Okayama 710-0046, Japan. |
| | + | * RIKEN Innovation Center, Ion Beam Breeding Laboratory, 2-1 Hirosawa, Wako, Saitama 351-0198, Japan. |
| | ==References== | | ==References== |
| − | Please input cited references here.
| + | <references> |
| | + | * <ref name="ref1"> |
| | + | Hanzawa E, Sasaki K, Nagai S, Obara M, Fukuta Y, Uga Y, Miyao A, Hirochika H, |
| | + | Higashitani A, Maekawa M, Sato T. Isolation of a novel mutant gene for |
| | + | soil-surface rooting in rice (Oryza sativa L.). Rice (N Y). 2013 Nov 20;6(1):30. |
| | + | doi: 10.1186/1939-8433-6-30. PubMed PMID: 24280269; |
| | + | </ref> |
| | + | </references> |
| | | | |
| | ==Structured Information== | | ==Structured Information== |
| − | {{JaponicaGene|
| + | [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 4]] |
| − | GeneName = Os04g0101800|
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| − | Description = The start codon is not identified.|
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| − | Version = NM_001058528.2 GI:297602028 GeneID:4334888|
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| − | Length = 3588 bp|
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| − | Definition = Oryza sativa Japonica Group Os04g0101800, complete gene.|
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| − | Source = Oryza sativa Japonica Group
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| − | | |
| − | ORGANISM Oryza sativa Japonica Group
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| − | Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
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| − | Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
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| − | clade; Ehrhartoideae; Oryzeae; Oryza.
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| − | |
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| − | Chromosome = [[:category:Japonica Chromosome 4|Chromosome 4]]|
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| − | AP = Chromosome 4:112189..115776|
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| − | CDS = 112474..114285|
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| − | GCID = <gbrowseImage1>
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| − | name=NC_008397:112189..115776
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| − | source=RiceChromosome04
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| − | preset=GeneLocation
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| − | </gbrowseImage1>|
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| − | GSID = <gbrowseImage2>
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| − | name=NC_008397:112189..115776
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| − | source=RiceChromosome04
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| − | preset=GeneLocation
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| − | </gbrowseImage2>|
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| − | CDNA = <cdnaseq>ggattagggattattactagtcttgttgtacttgttgattttgttgagagaaaagaaaagaaggaattgattgctaaagaaataaataatgttggatggatgcagagccggtgcggcgtgtgctcccacggcgtgaagaccggcgcggcggcggtgttcacggcggagtgctcccactccttccacttcccctgcatcgccgcccacgcccacgccctcgccgccgccaccgctctctcctgccccgtctgcgccgcgccatggcgccaggcccccttcatcaacaagcgcaccaccaccaccgacgaccacaagcgcaagtcctacgacgacgacgagcccctcctcgcgcccaaggccgccgccggcgccttcaaccctatccccgaggacgacgaggacgacgccaccgagttcaggggcttcttcccggcgcgccccaggagcgggctggccgtcaccctcgccccggacgccgccctcgtgtccgctgggcggaggcacggcaagtacgtggtggccgtgagggtgaaggcgcccgccctgcgctcctcgccctccacgcgcgcccccatcgacctcgtcaccgtcctcgacgtcagccagggcatgatgggcgacaagcttcacatgctcaagagaggcatgcgcctcgtcatcgcctctctcggccccgccgaccgcctcgccatcgtcgccttctccggcgccgccaagcgcctcctcccgctgcgccggatgacgcgccagggccagcgctccgcccgccagatcgtcgatcgccttgtcgtctgcgccgccgcccagggccaggaacagccgcaggccgtctgcgttggcgacgcgctgcgcaaggccaccaaggtgctcgaggaccgccgcgaccgcaaccccgtcgccaccgtcatgctcctctccgacacgcagcagcagcagcagcagcagcaggatgcgatccggcgcccgccagccgcccctccggccacgcgattcacgcacgtcgagatccccatcgggccaggggaggagccggcccggtcggcgctggtggcggaggaggacgacgaccagttctcggagcacgccttcgcgaaatgcctgggcggcctcgtcagcgtggtgatgcaggaggtgcagctggagctggcgttcccgacgggcgagatcacggcggtgtactcgtgcggccacgggcagcaggcggtggcccttgggggcggtggcggcggcgcggcggtgagtgtctccctgggcgagatgtacgcggaggaagagcgggagctgctggtggagctgcgcgcgccgctgagccagagccacccacactcgctgtccgtgcggtgcagctaccgtgagccggcgtcgcaggagacggtgcgcggcgcggagcagcagctggtggtgccggccctccacggcgggagctcgtcgcggcggctgcacgacctgttcgtggcgacacgggcggtggccgagtcgcggcggctggcggagctgaacgactacgcgacggccatccacctgctgtcgtcggcgcgggcggtggtggtgcagtcggcggagcaggggctggttggcagcctggacacggagctgagcgacatgcggtggcggcgcgggcagtcggcaggcaggcggcgtggcggcgagtcggaggagactccggtggggacgccgcgggcgcgggggggagagccgctgacgccgacgtcggcgtggcgcgcggcggagcagctggccaaggtggccatcatgcgcaagtccatgaaccgtgtcagcgatctccacggtttcgagaacgccagattctga</cdnaseq>|
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| − | AA = <aaseq>GLGIITSLVVLVDFVERKEKKELIAKEINNVGWMQSRCGVCSHG VKTGAAAVFTAECSHSFHFPCIAAHAHALAAATALSCPVCAAPWRQAPFINKRTTTTD DHKRKSYDDDEPLLAPKAAAGAFNPIPEDDEDDATEFRGFFPARPRSGLAVTLAPDAA LVSAGRRHGKYVVAVRVKAPALRSSPSTRAPIDLVTVLDVSQGMMGDKLHMLKRGMRL VIASLGPADRLAIVAFSGAAKRLLPLRRMTRQGQRSARQIVDRLVVCAAAQGQEQPQA VCVGDALRKATKVLEDRRDRNPVATVMLLSDTQQQQQQQQDAIRRPPAAPPATRFTHV EIPIGPGEEPARSALVAEEDDDQFSEHAFAKCLGGLVSVVMQEVQLELAFPTGEITAV YSCGHGQQAVALGGGGGGAAVSVSLGEMYAEEERELLVELRAPLSQSHPHSLSVRCSY REPASQETVRGAEQQLVVPALHGGSSSRRLHDLFVATRAVAESRRLAELNDYATAIHL LSSARAVVVQSAEQGLVGSLDTELSDMRWRRGQSAGRRRGGESEETPVGTPRARGGEP LTPTSAWRAAEQLAKVAIMRKSMNRVSDLHGFENARF</aaseq>|
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| − | DNA = <dnaseqindica>1492..3303#gcttggtttggttcctctctgcttctctctcttttcctccctccggcgaccaccagcataccataccatcgccggcttgcttgcttccttccttccttccttgggggagagagagagtgtgtgtgtgatggggacggggtggcggagggcactgtgcacgtcggtccggcgagatccggagcaacaagaggtgaagaggcgaggagaggccccaagcccccggtgtggaggaggcagcaggctgggtggcttcttctccgccatctccagcagccatagcagcagtaatccagcaacaacgacgcccaccctgcgatgccgcaccaaaccaaagccacagtccagcagcagcgaccaccagcagcagcttccgtcgtccgcgccggcgcccaagaagaggatgcctctgctgcaggctctctccgtgccatcctcgcccagatccccctccagattcgccctcctcaaggcctccatcctgcccaacaaggtaggtacctcttcttctccttctttagaaatgatgatgactcaaatgaagaataaatagctcctgcctgccttggccctgtgatcccccatgcatatcatatatattatgctcttcttcctcttctaatctggctgtagcggcggacggacggagatggagatcgaatcgatcaatcattgccaccactctctcttttgtcctaatccccttcccttccctcccctccttgagattcgattcgattcgcctcacgcaataataataataattactccctccgttttaaaatatttgacacagttgactttttagcatatatttgatcgtttgtcttattcaaaaacttttgtgaaatatgtaaaattatatgcctatataaaaatatatttaacaatgaatcaaatgatagaaaaataattgataactacttaaatttttaaacatgtgctaaaaattcaacggcaggtagtaaaatggaggtagtaactaataataacatcacaggcagaggagcagctttccttccgtcctgcaactgcaatcccccaccccgccacttcctcttttctttttgtttctttttaaatttctttcttctgggaatgggagtgacaatgcgagtgagaagcagaatggaacccatgaaattaacggtgaaggtataattgcagatataggtaggtagagatagatcgagaggatggatgatctcgaacaagatgtaaaaggatgatgatgcagggcccaaaggaagagagaaaggctgctcctctcttttggagtatgtcaaacaacaagtgaaaggctggctggggattggggaaagatggatcagattcagatcagatcgcccagctttttcttgattttgatcctccatcgattaccaatcaatcaaatgcctgccaaaaagaaagatcctccagcctttctttctttcttaattttgctccatccacagcactccactcactgtcgactctgtttatttagtttagggattagggattattactagtcttgttgtacttgttgattttgttgagagaaaagaaaagaaggaattgattgctaaagaaataaataatgttggatggatgcagagccggtgcggcgtgtgctcccacggcgtgaagaccggcgcggcggcggtgttcacggcggagtgctcccactccttccacttcccctgcatcgccgcccacgcccacgccctcgccgccgccaccgctctctcctgccccgtctgcgccgcgccatggcgccaggcccccttcatcaacaagcgcaccaccaccaccgacgaccacaagcgcaagtcctacgacgacgacgagcccctcctcgcgcccaaggccgccgccggcgccttcaaccctatccccgaggacgacgaggacgacgccaccgagttcaggggcttcttcccggcgcgccccaggagcgggctggccgtcaccctcgccccggacgccgccctcgtgtccgctgggcggaggcacggcaagtacgtggtggccgtgagggtgaaggcgcccgccctgcgctcctcgccctccacgcgcgcccccatcgacctcgtcaccgtcctcgacgtcagccagggcatgatgggcgacaagcttcacatgctcaagagaggcatgcgcctcgtcatcgcctctctcggccccgccgaccgcctcgccatcgtcgccttctccggcgccgccaagcgcctcctcccgctgcgccggatgacgcgccagggccagcgctccgcccgccagatcgtcgatcgccttgtcgtctgcgccgccgcccagggccaggaacagccgcaggccgtctgcgttggcgacgcgctgcgcaaggccaccaaggtgctcgaggaccgccgcgaccgcaaccccgtcgccaccgtcatgctcctctccgacacgcagcagcagcagcagcagcagcaggatgcgatccggcgcccgccagccgcccctccggccacgcgattcacgcacgtcgagatccccatcgggccaggggaggagccggcccggtcggcgctggtggcggaggaggacgacgaccagttctcggagcacgccttcgcgaaatgcctgggcggcctcgtcagcgtggtgatgcaggaggtgcagctggagctggcgttcccgacgggcgagatcacggcggtgtactcgtgcggccacgggcagcaggcggtggcccttgggggcggtggcggcggcgcggcggtgagtgtctccctgggcgagatgtacgcggaggaagagcgggagctgctggtggagctgcgcgcgccgctgagccagagccacccacactcgctgtccgtgcggtgcagctaccgtgagccggcgtcgcaggagacggtgcgcggcgcggagcagcagctggtggtgccggccctccacggcgggagctcgtcgcggcggctgcacgacctgttcgtggcgacacgggcggtggccgagtcgcggcggctggcggagctgaacgactacgcgacggccatccacctgctgtcgtcggcgcgggcggtggtggtgcagtcggcggagcaggggctggttggcagcctggacacggagctgagcgacatgcggtggcggcgcgggcagtcggcaggcaggcggcgtggcggcgagtcggaggagactccggtggggacgccgcgggcgcgggggggagagccgctgacgccgacgtcggcgtggcgcgcggcggagcagctggccaaggtggccatcatgcgcaagtccatgaaccgtgtcagcgatctccacggtttcgagaacgccagattctgattctcatcatctatcaatctcagctcagcttgtaatcaatgataattttcttttctttttcattttcattttcattttcttcttatgtgaaatgaatcaacaaacacaagatatgtctccacgacgaagaagaaagaagaaaggcagaattaagaagagggaggagtccctgccggagcgcggcggacgtaaattacatctactccctccattactgttttctttttctcttctctttttgtactcctattcaaaaatttgaactagtttagacagtctcatcct</dnaseqindica>|
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| − | Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001058528.2 RefSeq:Os04g0101800]|
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| − | }}
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| − | [[Category:Genes]] | |
| − | [[Category:Japonica mRNA]]
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| − | [[Category:Oryza Sativa Japonica Group]] | |
| − | [[Category:Japonica Genes]] | |
| − | [[Category:Japonica Chromosome 4]]
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| − | [[Category:Chromosome 4]]
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