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| − | {{JaponicaGene|
| + | The rice '''''Os12g0612700''''' was reported as '''''OsHox33''''' in 2013 <ref name="ref1" /> by researchers from China. |
| − | GeneName = Os12g0612700|
| |
| − | Description = Similar to HD-Zip protein (Homeodomain transcription factor) (ATHB-14) (Homeodomain-leucine zipper protein 14)|
| |
| − | Version = NM_001073792.1 GI:115489545 GeneID:4352777|
| |
| − | Length = 6698 bp|
| |
| − | Definition = Oryza sativa Japonica Group Os12g0612700, complete gene.|
| |
| − | Source = Oryza sativa Japonica Group
| |
| | | | |
| − | ORGANISM Oryza sativa Japonica Group
| + | ==Annotated Information== |
| − | Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
| + | ===Function=== |
| − | Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
| + | * '''''OsHox33''''' plays an important role in age-dependent leaf senescence in rice. |
| − | clade; Ehrhartoideae; Oryzeae; Oryza.
| + | * '''''OsHox33''''' is a member of the class III homeodomain-leucine zipper gene family which can accelerate leaf senescence in rice. |
| − | |
| + | * '''''OsHox33''''' can regulate the expression of '''''GS1''''' and '''''GS2''''', two senescence-associated genes. |
| − | Chromosome = [[:category:Japonica Chromosome 12|Chromosome 12]]|
| + | ===Phenotypic analysis=== |
| − | AP = Chromosome 12:26147099..26153796|
| + | * To reveal the function of OsHox33 in rice, the researchers constructed two RNAi vectors using specific fragments from the 3′-UTR or 5′-end region (5′-UTR and first exon) of '''''OsHox33'''''. These two RNAi constructs and two empty vectors were introduced into wild-type plants to produce transgenic plants. |
| − | CDS = 26147397..26147543,26147660..26147809,26147902..26148007,26148138..26148460,26148547..26148681<br>,26149336..26149416,26149510..26149698,26149826..26150018,26150135..26150241<br>,26150348..26150422,26150510..26150665,26150859..26150942,26151043..26151156<br>,26151236..26151331,26151434..26151524,26151612..26151727,26151825..26151984<br>,26153281..26153525|
| + | * The researchers obtained 47 T0 transgenic plants of 16 independent lines with the RNAi 3′-UTR construct, and 61 transgenic plants of 23 independent lines with the RNAi 5′-end construct. |
| − | GCID = <gbrowseImage1>
| + | * The researchers randomly selected 15 lines with the 5′-end RNAi construct and 10 lines with the 3′-UTR RNAi construct to obtain T1 generation plants. Four of 15 lines with the 5′-end RNAi construct exhibited leaf senescence phenotypes. These plants initially displayed lesion spots in and around leaf midribs; the spots eventually expanded and increased throughout all parts of the leaves, leading to leaf wilting and death (Figure 2D and E). Two of 10 3′-UTR RNAi construct lines exhibited a similar but more severe phenotype: in addition to the appearance of lesion spots, yellowing occurred at leaf tips and spread to the rest of the leaf, leading to leaf wilting and death (Figure 2A–C). |
| − | name=NC_008405:26147099..26153796
| + | * In contrast, two empty transgenic lines exhibited a normal phenotype, indicating that knockdown of OsHox33 accelerated rice leaf senescence. |
| − | source=RiceChromosome12
| + | |
| − | preset=GeneLocation
| + | |
| − | </gbrowseImage1>|
| + | [[File:Os12g0612700.png|center|thumb|727px|'''Figure 2.''' ''Phenotypes and expression analysis of OsHox33 RNAi lines.<ref name="ref1" />.'']] |
| − | GSID = <gbrowseImage2>
| + | |
| − | name=NC_008405:26147099..26153796
| + | ===Expression=== |
| − | source=RiceChromosome12
| + | *'''''OsHox33''''' is mainly expressed in young organs and actively dividing cells, and may play crucial roles in rice growth and development |
| − | preset=GeneLocation
| + | |
| − | </gbrowseImage2>| | + | You can also add sub-section(s) at will. |
| − | CDNA = <cdnaseq>atggcagcggcggcggtggggggaaggggggagaggctgtcgtcctcctccccgacggcggcggcgccgcaggtggacgccgggaagtacgtccggtacacgcccgagcaggtggaggcgctggagcgggtgtacaccgagtgccccaagcccagctcactccgccgccagcagctcatccgggagtgccccatcctcagcaacatcgagcccaagcagatcaaggtctggtttcagaatcgcagatgccgggagaagcagcgcaaggaggcctcccggctgcaaactgtgaaccggaagctgaatgcgatgaacaagctgttgatggaggaaaatgaccggctgcagaagcaggtgtcccgtctcgtctacgagaacggctacatgcggactcaactgcacaatccttctgcagccaccacagatacaagctgtgagtctgtggtgacaagtggtcagcaccatcaacagcaaaacccagcagttctgcatccgcaaagggatgcgaacaacccagcaggtcttctcgctattgctgaggagaccttggcagagttcatgtcgaaggcgacaggaactgctgtcgaatgggtgcaaatggttgggatgaagcctggtccggattccattggaatcatcgctgtttcgcacaattgcagtggcgtagcagcacgagcttgcggcctggtgagccttgagcccacaaaggttgcagagatcctcaaggatcgcccctcttggtaccgtgattgccgatgcgtagatatcatccatgttatccctacgggtaacggcggaaccattgagctaatctacatgcagacatatgcaccgacaactttggcggcaccacgcgacttttggactctccgctacacaagtggacttgaagatgggagtcttgtgatctgtgaaaggtcattgactcagtccactggtggcccatctgggcctaacactccgaattttatcagagccgaggtacttcccagtggttatctgattcgaccatgtgagggaggtggctccatgatttacattgttgatcatgttgatttggatgcttggagtgtgcctgaggttcttcgaccgctctatgaatctccaaagatccttgcacagaagatgaccattgcagcattgcgacacattaggcaaattgcgcatgagtcaagcggtgaaatcccctacggtgctggtcgccagcctgctgttttcaggaccttcagtcaaaggctcagcagaggtttcaatgatgctgttagtggatttccagatgatgggtggtctttgttgagcagtgatggtagtgaggacattacaatttcagtaaactcgtctccaaacaagcttgttggatcccatgtcagcccgaaccctctgttttctactgttggaggtggcatcttgtgcgcaaaggcatcaatgctacttcagaatgtacctcctgctctacttgtgcgatttctgagggagcatcgttctgaatgggctgatcctggtgttgatgcttattctgctgcttctttgcgagccagcccatatgcagttccaggcttaaggaccagcgggtttatgggcagtcaggttatactacccctcgctcataccttagagcatgaagagttcttggaggttattaggctcgaaggacatggtttcagccatgatgaggtgcttctatcacgggatatgtaccttctacagctttgcagcggggttgatgagaatgctactagtgcatctgcacagcttgtctttgctcctattgacgaatcttttgctgatgatgcaccacttttaccctcaggattccgtgtgataccactagatacaaaaatggatgggccatctgcaacacgcacgctcgaccttgcatccgcccttgaggttggaccaggtggagcttcgcgtgcttcagttgaagcatctggcacatgtaacagatcagtcctgaccattgctttccaattctcatacgagaaccaccttcgtgagagcgtggcggcaatggctaggagttatgtcagagctgtgatggcatccgtgcagagggtggctgtggcaatagctccttctcgacttggaccccagatcggaatgaagcaccctccagcctctcctgaggcgcttacacttgctagctggattggtaggagctatagggctcacaccggagcagatatccgttggtctgataccgaagatgccgattctcccctggcgctcctgtggaagcacagcgacgcaatactgtgctgttctctgaagcctgctcctatgttcaccttcgccaacaatgccggcctcgacatccttgagacgacgctggtcaacctccaggacatctcgctcgagatgatcctggatgacgagggccggaaggcgctgtgctcggagttccccaagatcatgcagcagggtttcacctatctccctggaggcgtctgcaagtcgagcatggggcggcaggcatcgtatgagcaggcggtggcgtggaaggttcttagcgacgacgacgcgccgcactgcctcgccttcatgctcgtcaactggaccttcatgtga</cdnaseq>|
| + | |
| − | AA = <aaseq>MAAAAVGGRGERLSSSSPTAAAPQVDAGKYVRYTPEQVEALERV YTECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLN AMNKLLMEENDRLQKQVSRLVYENGYMRTQLHNPSAATTDTSCESVVTSGQHHQQQNP AVLHPQRDANNPAGLLAIAEETLAEFMSKATGTAVEWVQMVGMKPGPDSIGIIAVSHN CSGVAARACGLVSLEPTKVAEILKDRPSWYRDCRCVDIIHVIPTGNGGTIELIYMQTY APTTLAAPRDFWTLRYTSGLEDGSLVICERSLTQSTGGPSGPNTPNFIRAEVLPSGYL IRPCEGGGSMIYIVDHVDLDAWSVPEVLRPLYESPKILAQKMTIAALRHIRQIAHESS GEIPYGAGRQPAVFRTFSQRLSRGFNDAVSGFPDDGWSLLSSDGSEDITISVNSSPNK LVGSHVSPNPLFSTVGGGILCAKASMLLQNVPPALLVRFLREHRSEWADPGVDAYSAA SLRASPYAVPGLRTSGFMGSQVILPLAHTLEHEEFLEVIRLEGHGFSHDEVLLSRDMY LLQLCSGVDENATSASAQLVFAPIDESFADDAPLLPSGFRVIPLDTKMDGPSATRTLD LASALEVGPGGASRASVEASGTCNRSVLTIAFQFSYENHLRESVAAMARSYVRAVMAS VQRVAVAIAPSRLGPQIGMKHPPASPEALTLASWIGRSYRAHTGADIRWSDTEDADSP LALLWKHSDAILCCSLKPAPMFTFANNAGLDILETTLVNLQDISLEMILDDEGRKALC SEFPKIMQQGFTYLPGGVCKSSMGRQASYEQAVAWKVLSDDDAPHCLAFMLVNWTFM</aaseq>|
| + | ==Labs working on this gene== |
| − | DNA = <dnaseqindica>6254..6400#5988..6137#5790..5895#5337..5659#5116..5250#4381..4461#4099..4287#3779..3971#3556..3662#3375..3449#3132..3287#2855..2938#2641..2754#2466..2561#2273..2363#2070..2185#1813..1972#272..516#gaagaccagagagaagacgagaggcgatcgcagtggagtggagtgaagtactagcagtattaaaaccagcagcaagcgagagagaggccaccaaccacttcctcctccaagaaaccacccccaccacgagcacgagcacgagcaaccatggcggtggcagagggagctgcgactgcgagctacgggccatgactgcggcgagttcttgctgggttgttgttgtacaagcagcgacgaggaggaggggagcagaggaggaggaggcggagggatggcagcggcggcggtggggggaaggggggagaggctgtcgtcctcctccccgacggcggcggcgccgcaggtggacgccgggaagtacgtccggtacacgcccgagcaggtggaggcgctggagcgggtgtacaccgagtgccccaagcccagctcactccgccgccagcagctcatccgggagtgccccatcctcagcaacatcgagcccaagcagatcaaggtctggtttcagaatcgcaggtcagtctcatctccttctctctcttcgatctgtttctgctcgggtttgttcagcagccatggcgtgtgttcttcggtttcttttcttggttttgtgtaatgtgatgagattgattgctttgttgtttgcagttttttttcatgttcttgtgggaatgggggatcctttgtgaggaagatttgggttcttgagatgagttttttttttctgtttgatttgtagatgtctgtaactttttgggtgttgattttagggcttgcaatgtgttggattggtgacgagaaggttcatttctgggatttgcatcctatatgatgggttttgtttttttagttcgtcttgtgcaataatgaagcgcaatctgtttgcttgaaatttatcaggatattttcttttataaaactttgcggcaatgatttgagttcctgtgcccacactgttcttcgctgcattattctgctgggttgtgtggtgggtagggagcgaaatggcagcatcattcgttggtttcctcttggattttgtggtgatgtgaatagccaaatatcctggatctctgtacagactttacagttaattttgtttggtttaaattgtaaatatatgctctctgattgttttgttgcttgtggtgaccaatgattggttggagcaaaattgccttaggtcatttcttgtttcctgtgcttgccattttaagggccatctttttaaccctgtgttgtgggctgtggtagtgttcatgttttcttgctataggcctccataagcatcacctcctggttatcatctcgctttcttttttcagtggatcacaagtagggcaatagttttgtcactggtggtgtcactgtggaagaatgtgaagggcaacattttgagcaagtttggtatatactattactgtactcatgaaggccaaatataaatcaagaatcctttttaggtagaggatgctcttgtttagagttgagttcacagatgcagacagaaacatcactgtcaattaggcaatgattttcacatatggaatactaactgttattgcatagtatatagtcatttgtctcttttgcaaatgaccttttgcttgttcctgttcaatgatcccccttttaaccttggggaatatttgctaaaatgcctttgcctaacttcctttgtgctcatttgggctgtgccaatcagtatccattaacaagtattggaatcttgtgtattagaagacaccatcctttagatagtttattcatgtacttttgccactgaaattgtgccttccttgtaattggcagatgccgggagaagcagcgcaaggaggcctcccggctgcaaactgtgaaccggaagctgaatgcgatgaacaagctgttgatggaggaaaatgaccggctgcagaagcaggtgtcccgtctcgtctacgagaacggctacatgcggactcaactgcacaatgtgagctccctgtgcttacaggcttttgttcttacaattgcttcatattttgatcatcctgttttcttaatcagtaatgtttgtatgtactttgtagccttctgcagccaccacagatacaagctgtgagtctgtggtgacaagtggtcagcaccatcaacagcaaaacccagcagttctgcatccgcaaagggatgcgaacaacccagcagggtatccacaaaacctggtctattttcttcttttgttaggccgtgcttttttgtatgaaagattgctgagatgattttatttgcgcagtcttctcgctattgctgaggagaccttggcagagttcatgtcgaaggcgacaggaactgctgtcgaatgggtgcaaatggttgggatgaaggtaatgtattcgttgtacaagaaaactgtgcagtatgttgattttctctttccattcatgttttttttgttcaaatcaactgaaatgaaaatttgattacagcctggtccggattccattggaatcatcgctgtttcgcacaattgcagtggcgtagcagcacgagcttgcggcctggtgagccttgagcccacaaaggtatgatttgttttccttgatattgtgttacatttcccattaactggcatgctacagaccctgataagcttcattttaggttgcagagatcctcaaggatcgcccctcttggtaccgtgattgccgatgcgtagatatcatccatgttatccctacgggtaacggcggaaccattgagctaatctacatgcaggtaaatatacccaatcgtgactcatgtgttgcatttttctcaagcatcactagctactctttgtttttggtaataaccattgcccttttcaattccttagacatatgcaccgacaactttggcggcaccacgcgacttttggactctccgctacacaagtggacttgaagatgggagtcttgtggtattactttgatctttaattgcatgctgtcagctcattaaacaaaatgcttcctttcattttcttgtatggtctattcgtcatgttatgatcggacttgttctgtttggatcataccacatcatcatggttttcaactgaagtgtagtttctgttgtattaaatattgtttgacaccattcctgttctgtagatctgtgaaaggtcattgactcagtccactggtggcccatctgggcctaacactccgaattttatcagagccgaggtacttcccagtggttatctgattcgaccatgtgagggaggtggctccatgatttacattgttgatcatgttgatttggatgtaagtaacaatagtgttttcacattaactagtgtaatattgaatagttttgagatacatatcttattaatcctgtgtattttacaggcttggagtgtgcctgaggttcttcgaccgctctatgaatctccaaagatccttgcacagaagatgaccattgcagtatgtgcactgttttattctgttgttgaagagcacttggtcacctcatggtgattgtgagtgcataacttttcttatcaccaatgacatggttcattctgttcaggcattgcgacacattaggcaaattgcgcatgagtcaagcggtgaaatcccctacggtgctggtcgccagcctgctgttttcaggaccttcagtcaaaggctcagcaggtctgtagctatttgagggttcccatgtattagaaccaattggcatactgtcatatgacacagttccatgcatgtctcattgctcacgcatctgaactccatactctaatttgcagaggtttcaatgatgctgttagtggatttccagatgatgggtggtctttgttgagcagtgatggtagtgaggacattacaatttcagtaaactcgtctccaaacaagcttgttggatcccatgtcagcccgaaccctctgttttctactgttggaggtggcatcttgtgcgcaaaggcatcaatgctacttcaggttgacataggctctatttagttgctcagctaattatagattgtctctatctttgtttcactttgaccaaaattgttccaaatcaaagaattaagctttacaaaatgtcattttttttataatgtagaatgtacctcctgctctacttgtgcgatttctgagggagcatcgttctgaatgggctgatcctggtgttgatgcttattctgctgcttctttgcgagccagcccatatgcagttccaggcttaaggaccagcgggtttatgggcagtcaggttatactacccctcgctcataccttagagcatgaagaggtaatgttgtaattgagtccttgtaggcttgtagctccttttccacaatgaatggcaaatattaatgcatcaacctggcattctgaattgcagttcttggaggttattaggctcgaaggacatggtttcagccatgatgaggtgcttctatcacgggatatgtaccttctacaggtattgtggaccatccgagtcaactatttattcctttgctgttgggctggacaagtgggcttcggtgggaggcatgctgctgttcttggccaccgtatgggcctaaccttctgctcagggtttctggtggatcaggtcctcctgcgcatgaattattttttatttttgttcataataaaagctgagatgtaaaaggtttaagagtcttagtttaggttatggtgcttcgttaagtctagcagggtgtgctgcagctcgaggacgagctgctcaaaaaggggggagtaatgtcatgggctttgggccgggcgtcctaggtccattggataggattagggtttgttaggattagataaggtttgttaggattagattaaggagtcctccatctatataaggagggatcctatctcaggtcaattaggcattagatcaagatttatcttagtgcccatcggcctgccttctcagtgcgacggagagcgtcgcgccgtttaggttcaggaccgtattccttgttatttcatctactataatccaatctatccccattcatcccgattcttctccacataatccttgctcatgacaattgccttaagttgtacctgtttgttgcattttcctggttctgagagattgctttctatgcagctttgcagcggggttgatgagaatgctactagtgcatctgcacagcttgtctttgctcctattgacgaatcttttgctgatgatgcaccacttttaccctcaggattccgtgtgataccactagatacaaaaatggtatgactggtccataatcttattccagaggccttgtctttcccatgttggctcaccaattaaccgttatgcactcaaacctgcaggatgggccatctgcaacacgcacgctcgaccttgcatccgcccttgaggttggaccaggtggagcttcgcgtgcttcagttgaagcatctggcacatgtaacagatcagtcctgaccattgctttccaattctcatacgagaaccaccttcgtgagagcgtggcggcaatggctaggagttatgtcagagctgtgatggcatccgtgcagagggtggctgtggcaatagctccttctcgacttggaccccagatcggaatgaagcaccctccagcctctcctgaggcgcttacacttgctagctggattggtaggagctataggtaagtaaaatacttatttttagcaaaagtctatctcaggttcttcatcatcagaaccacctacacattgccacatctgaagttgtgatcaatgatgttaatgcactagttatttccgtggatctttcagggctcacaccggagcagatatccgttggtctgataccgaagatgccgattctcccctggcgctcctgtggaagcacagcgacgcaatactgtgctgttctctgaaggttagtagtgctgcccactaattttatgctcatttcatcacatgcatgttctggaaaccttgctaatggtcagtttggttatctactggcagcctgctcctatgttcaccttcgccaacaatgccggcctcgacatccttgagacgacgctggtcaacctccaggacatctcgctcgagatgatcctggatgacgagggccggaaggcgctgtgctcggagttccccaagatcatgcagcaggtaaaaccaccgtgtccctgcctcgcgacaatcggtgacgcatccatcagagtactaccagaccatgagcaatgttcctgatcaagcctgtttggggtctgtctatcttctttcagggtttcacctatctccctggaggcgtctgcaagtcgagcatggggcggcaggcatcgtatgagcaggcggtggcgtggaaggttcttagcgacgacgacgcgccgcactgcctcgccttcatgctcgtcaactggaccttcatgtgatccaccatccatggtttccagcttccagctagtgcttttgcttttgtgccattgtggcaaactgaacaaagacctgaataccaccaccgtattgtattaaacatatgcgtccatacatgcatggtgcttgctttatcctagctagtgctagcacctgtgtgtatggtctctccatgtttgaagcttaaaattttagaaccctggtttttttttttctgctgctgtgtggatgaacaagtttcaggacctatgtatctctatctatctatgctaatgctatgaattgtgtgatgtgtgt</dnaseqindica>|
| + | * College of Life Sciences, Tianjin Key Laboratory of Animal and Plant Resistance, Tianjin Normal University, Tianjin 300387, China; |
| − | Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001073792.1 RefSeq:Os12g0612700]|
| + | * Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101, China; |
| − | }}
| + | * School of Life Science, Tsinghua University, Beijing 100084, China; |
| − | [[Category:Genes]] | + | * Oil Crops Research Institute, Chinese Academy of Agricultural Sciences, Wuhan 430062, China |
| − | [[Category:Japonica mRNA]]
| + | |
| − | [[Category:Oryza Sativa Japonica Group]] | + | ==References== |
| − | [[Category:Japonica Genes]]
| + | <references> |
| − | [[Category:Japonica Chromosome 12]] | + | * <ref name="ref1"> |
| − | [[Category:Chromosome 12]]
| + | Luan W, Shen A, Jin Z, Song S, Li Z, Sha A. Knockdown of OsHox33, a member of |
| | + | the class III homeodomain-leucine zipper gene family, accelerates leaf senescence |
| | + | in rice. Sci China Life Sci. 2013 Dec;56(12):1113-23. doi: |
| | + | 10.1007/s11427-013-4565-2. Epub 2013 Dec 5. PubMed PMID: 24302292. |
| | + | </ref> |
| | + | |
| | + | </references> |
| | + | |
| | + | ==Structured Information== |
| | + | [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 12]] |
