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| − | {{JaponicaGene|
| + | *The rice '''Os02g0252400''' was reported as '''RPBF''' in 2009 <ref name="ref1" /> by researchers from the Japan. |
| − | GeneName = Os02g0252400|
| + | <br> |
| − | Description = Similar to Zn finger protein (Fragment)|
| + | ==Annotated Information== |
| − | Version = NM_001052986.1 GI:115445342 GeneID:4328903|
| + | [[File:32-f1.png |right |thumb |327px |''''''Figure 1. Generation of RISBZ1 and RPBF knockdown (KD) lines.'''''']] |
| − | Length = 3448 bp|
| + | ===Gene Symbol=== |
| − | Definition = Oryza sativa Japonica Group Os02g0252400, complete gene.|
| + | *'''Os02g0252400 <=> RPBF''' |
| − | Source = Oryza sativa Japonica Group
| + | <br> |
| | + | ===Function=== |
| | + | *RISBZ1 and RPBF can ragulate the gene expression of DEFECTIVE KERNEL1(OsDEK1), CRINKLY4 (OsCR4) and SUPERNUMERARY ALEURONE LAYER 1 (OsSAL1) rice homologues. |
| | + | *Combinatorial interactions between RISBZ1 and RPBF play an essential role during grain filling. |
| | + | *The functional redundancy and compensation between RISBZ1 and RPBF possibly account for weak effects on the SSP levels in single KD mutants, and help maintain various processes during seed development in rice. |
| | + | <br> |
| | | | |
| − | ORGANISM Oryza sativa Japonica Group
| + | ==Labs working on this gene== |
| − | Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
| + | *Transgenic Crop Research and Development Centre, National Institute of Agrobiological Sciences, Tsukuba,Ibaraki 305-8602, Japan; |
| − | Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
| + | *Graduate School of Science and Technology, Chiba University, Matsudo, Chiba 271-8510, Japan |
| − | clade; Ehrhartoideae; Oryzeae; Oryza.
| + | <br> |
| − | |
| + | ==References== |
| − | Chromosome = [[:category:Japonica Chromosome 2|Chromosome 2]]|
| + | <references> |
| − | AP = Chromosome 2:8619316..8622763|
| + | <ref name="ref1"> |
| − | CDS = 8619636..8620757|
| + | Adachi, T., Izumi, H., Yamada, T., Tanaka, K., Takeuchi, S., Nakamura, R. and Matsuda, T. (1993) Gene structure and expression of rice seed allergenic |
| − | GCID = <gbrowseImage1>
| + | proteins belonging to the alphaamylase/trypsin inhibitor family. Plant Mol. Biol. 21, 239–248. |
| − | name=NC_008395:8619316..8622763 | + | </ref> |
| − | source=RiceChromosome02
| + | |
| − | preset=GeneLocation
| + | </references> |
| − | </gbrowseImage1>|
| + | <br> |
| − | GSID = <gbrowseImage2>
| + | |
| − | name=NC_008395:8619316..8622763
| + | ==Structured Information== |
| − | source=RiceChromosome02
| + | [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 2]] |
| − | preset=GeneLocation
| |
| − | </gbrowseImage2>| | |
| − | CDNA = <cdnaseq>atggcgagcggcggcgcattatccccggtggaggagaagcccacggtggtgaagacgaccaaggcggagcagcacgaggaggaggcggcggtggcggtgaagagcgcggcggagatgatgaagaagagcagcccgtgctgcccccggtgcaactccatcaagaccaagttctgctactacaacaactacagcatggcgcagccgcgctacttctgccgcgagtgccgccgctactggacccagggcggctccctccgcaacgtccccgtcggcggcggctgccgcaagagcaagcgctcgtcggcctcgtcggcgtcggcgtcggcggcgtctcctcctgctcctgcggtgggcgccgcgccaccggtggtgccggcgctgtcgtcggcgatcagcaagctgctgcagtcggagcccatggcggcgccgtgcgcggacttccccaacgtgctcccgaccttcgtgtccaccgggttcgagctccccgccgccgccggcgaccgcctctcgctggggtcgttcggggcgttcggcaacctgtcggcggcggtggcggctcccggcggtggtggtgggtcgtcgacgaccacgtcgttcatggacatgctgaggggagttggagggcttttcgacggcgtcggcaacagccatcagatgggcggcaatggcggcggcggaggcagctactacgcgcctctcatcaccggcgccggcaatggcatgctgatgccgccgccgccgctgccgccattttctggttctctgatgcagcatgggatgcaggggctgttcgccaatcatgcgatgggaggaggtggtggtggagtgatgaacgccggcgaggacggcagcgtgatggcggggctgggaggaggccagtggccgccggcgcttggtggtgcagacgagcagcagggcggcggcgacggtggcgaagctgtgatgacgaaggacaccggcggcggcgcatcgtcgtcggcgtcgaggccggactacttctacggctggaacagcgccgccggcggcgtcgtcgctggaggcggcatcggcggcaacgccgccgctgccaccggagcaacgccatggcagggcctcatcgacagcagctcggccatgatgtaa</cdnaseq>|
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| − | AA = <aaseq>MASGGALSPVEEKPTVVKTTKAEQHEEEAAVAVKSAAEMMKKSS PCCPRCNSIKTKFCYYNNYSMAQPRYFCRECRRYWTQGGSLRNVPVGGGCRKSKRSSA SSASASAASPPAPAVGAAPPVVPALSSAISKLLQSEPMAAPCADFPNVLPTFVSTGFE LPAAAGDRLSLGSFGAFGNLSAAVAAPGGGGGSSTTTSFMDMLRGVGGLFDGVGNSHQ MGGNGGGGGSYYAPLITGAGNGMLMPPPPLPPFSGSLMQHGMQGLFANHAMGGGGGGV MNAGEDGSVMAGLGGGQWPPALGGADEQQGGGDGGEAVMTKDTGGGASSSASRPDYFY GWNSAAGGVVAGGGIGGNAAAATGATPWQGLIDSSSAMM</aaseq>|
| |
| − | DNA = <dnaseqindica>2007..3128#ctcctcctcttcttcatcgtttcgcttagcttttctttcttcttcgtcgtctcggttcactcctccgttcgatcgactttgcttgtttcaagcaagctagatctctcaccaacaggtacttatgtttctccggcgtcttcgctttctcccctttttttttgttgaaaagatcttcgctttcttcttttgattgtatatatatatatatatatagtcttgttggtagtcttcaagaagtttgatttaactatttcttgatctatttgcgactagattctatatatacgcaagagtattacatgtatttgtatgtgtttcacttcattcggttgttcttttgcatctacatgaacacatatgggttcctatatatctagctatggatcgatcttggtatgcgtacaaaaattcatagtccagcaccatctacctatatatctaggattctagggtggtgttcagctagcatgatctcaaatcgatttgtttcttttgctcggtctatggttcaattacttgtaaaagtttcgaaagaaatcaacgctgcatccaaatgatttggtattccctttattatagtttaattttgaaacctcttcatctcttgattttgcggtgagcgatcaataagtacgctatttcaaaaaaaatcctcatattattccttgttcatccatgtatgcacgagaattctgtagctagttgtcacacgcatagatttgtcgcgcatagaaaataagtcttactaggaattgtcttatctcgtcagttttggtcgtacgcaagcaacagttatgaaacagtccaagaaaataagccgtaacgtgtttcctcgaatcgcgggtggacagaaagctaaaaataatcgaattaacgcctattttgtcacatattaaattaagcatattaatttcctccaaagaaatttgtgttcaatttcttgcgctaagtccgcgtgaaaaaaaaaggaatcaacctccctattctagcactcatttctatttcaaaatatggaaaggaaatgaaagaaagcaaaatcccacatatgattatacttggttttcatagggtaacataattaattaattgtttgatcacacacaaacaaacacacacacacacacacacacacacacaaatataaacacacacataaactatgctttgaactattgtggctattgctggttgtagaaaatcaaccatattaattccagtgttcatttttatttgaaaatatggaaaaggaatgaaagaaaagaaagaaccactcccaccatatgattgtatgttgtgatagaaaataaggtcttggtaggaattctcttcacatcaattttggtttcgtaggcaagtaacagttatgaaacaatccaagaaaaataagacgcaacatatttccttaaatcgtgggtggcagaaagattaaaataccgttgaattaatgcctattttgtcgcatattaaattaaacctattaatttcctaaaaaaaacagtgcgtgttcaagttgttggtctagatccgagtgaaaaagaatcaacctcctcatattgatgttcattttattaaaaaagatagaaaaaaagacagaaaacaaaggaccactcccacaccatatgattgtaagattgttgttgaagttttcatatggtaatgtaattaattaactatgtgatcatattcatttatataccatgcttcatgtgttttgcataggatctctactggtagctagtagaatcaacttattcatttcaccttctctataatccaataaatcatactatatctttatactaccatctcaaataatatcggtaatagaataatttttttaacaatagtagaactcatatatcaactattgagatatcacattatcgcttctatgtttatacctacgataataccaataataaaatgctaccagtagagaccaccgtagagacactcaccgtgcttaattttgaaccattatggctattgtgtgcaggaggtgatcaatggcgagcggcggcgcattatccccggtggaggagaagcccacggtggtgaagacgaccaaggcggagcagcacgaggaggaggcggcggtggcggtgaagagcgcggcggagatgatgaagaagagcagcccgtgctgcccccggtgcaactccatcaagaccaagttctgctactacaacaactacagcatggcgcagccgcgctacttctgccgcgagtgccgccgctactggacccagggcggctccctccgcaacgtccccgtcggcggcggctgccgcaagagcaagcgctcgtcggcctcgtcggcgtcggcgtcggcggcgtctcctcctgctcctgcggtgggcgccgcgccaccggtggtgccggcgctgtcgtcggcgatcagcaagctgctgcagtcggagcccatggcggcgccgtgcgcggacttccccaacgtgctcccgaccttcgtgtccaccgggttcgagctccccgccgccgccggcgaccgcctctcgctggggtcgttcggggcgttcggcaacctgtcggcggcggtggcggctcccggcggtggtggtgggtcgtcgacgaccacgtcgttcatggacatgctgaggggagttggagggcttttcgacggcgtcggcaacagccatcagatgggcggcaatggcggcggcggaggcagctactacgcgcctctcatcaccggcgccggcaatggcatgctgatgccgccgccgccgctgccgccattttctggttctctgatgcagcatgggatgcaggggctgttcgccaatcatgcgatgggaggaggtggtggtggagtgatgaacgccggcgaggacggcagcgtgatggcggggctgggaggaggccagtggccgccggcgcttggtggtgcagacgagcagcagggcggcggcgacggtggcgaagctgtgatgacgaaggacaccggcggcggcgcatcgtcgtcggcgtcgaggccggactacttctacggctggaacagcgccgccggcggcgtcgtcgctggaggcggcatcggcggcaacgccgccgctgccaccggagcaacgccatggcagggcctcatcgacagcagctcggccatgatgtaagctcaatcaaatcaaccatgccaaggttggagagagatctcatccagaagttgttgctagcttcttggaatgatttttcttcagcttcatcgatcgctttagttcgttttttatccgtggatcaaattagttcgctctttggaaaaattcgtcgaaacagttttaaattttgctagacaaatgaatgtcgtcgtcgtcatcgtcgctcgtttacctgtaattagcttggagttggggttgtttgattgacctcatggaaccatgcaaaaggttctcatgtttaaggggagttaattaaatgtacatcattggtcgtgaca</dnaseqindica>|
| |
| − | Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001052986.1 RefSeq:Os02g0252400]|
| |
| − | }}
| |
| − | [[Category:Genes]] | |
| − | [[Category:Japonica mRNA]]
| |
| − | [[Category:Oryza Sativa Japonica Group]] | |
| − | [[Category:Japonica Genes]]
| |
| − | [[Category:Japonica Chromosome 2]] | |
| − | [[Category:Chromosome 2]]
| |
