|
|
| (11 intermediate revisions by 3 users not shown) |
| Line 1: |
Line 1: |
| − | Please input one-sentence summary here.
| + | The rice Os02g0255100 was reported as DCW11 in 2008 <ref name="ref1" /> by researchers from the Japan. |
| | + | <br> |
| | + | ==Annotated Information== |
| | + | [[File:33-f1.png |right |thumb |427px |''''''Fig. 4 Characterization of DCW11 knockdown plants and three types of CMS.'''''']] |
| | + | ===Gene Symbol=== |
| | + | *'''Os02g0255100 <=> DCW11''' |
| | + | <br> |
| | | | |
| − | ==Annotated Information==
| |
| | ===Function=== | | ===Function=== |
| − | Please input function information here.
| + | *DCW11 is one of the down-regulated genes in CW-CMS encoding a protein phosphatase 2C (PP2C). |
| | + | *DCW11 could play a role as a mitochondrial signal transduction mediator in pollen germination. |
| | + | <br> |
| | | | |
| | ===Expression=== | | ===Expression=== |
| − | Please input expression information here.
| + | *DCW11 mRNA was preferentially expressed in anthers, with the highest expression in mature pollen. |
| − | | + | *Knockdown of DCW11 in wild-type rice by RNA interference caused a major loss of seed-set fertility, without visible defect in pollen development. |
| − | ===Evolution===
| + | *Since this knockdown phenotype resembled that of CW-CMS, the researchers concluded that the down-regulation of DCW11 is correlated with CW-CMS. |
| − | Please input evolution information here.
| + | <br> |
| − | | |
| − | You can also add sub-section(s) at will.
| |
| | | | |
| | ==Labs working on this gene== | | ==Labs working on this gene== |
| − | Please input related labs here.
| + | *Laboratory of Environmental Biotechnology, Graduate School of Agricultural Science, Tohoku University |
| | + | <br> |
| | + | ==References== |
| | + | <references> |
| | + | <ref name="ref1"> |
| | + | Butow, R.A. and Avadhani, N.G. (2004) Mitochondrial signaling: the |
| | + | retrograde response. Mol. Cell 14: 1–15. |
| | + | </ref> |
| | | | |
| − | ==References==
| + | </references> |
| − | Please input cited references here.
| + | <br> |
| | | | |
| | ==Structured Information== | | ==Structured Information== |
| − | {{JaponicaGene|
| + | [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 2]] |
| − | GeneName = Os02g0255100|
| |
| − | Description = Protein phosphatase 2C family protein|
| |
| − | Version = NM_001052996.1 GI:115445362 GeneID:4328913|
| |
| − | Length = 6202 bp|
| |
| − | Definition = Oryza sativa Japonica Group Os02g0255100, complete gene.|
| |
| − | Source = Oryza sativa Japonica Group
| |
| − | | |
| − | ORGANISM Oryza sativa Japonica Group
| |
| − | Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
| |
| − | Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
| |
| − | clade; Ehrhartoideae; Oryzeae; Oryza.
| |
| − | |
| |
| − | Chromosome = [[:category:Japonica Chromosome 2|Chromosome 2]]|
| |
| − | AP = Chromosome 2:8789066..8795267|
| |
| − | CDS = 8789130..8789443,8792775..8792902,8792982..8793080,8793196..8793354,8793935..8794021<br>,8794258..8794349,8794566..8794640,8794816..8794953|
| |
| − | GCID = <gbrowseImage1>
| |
| − | name=NC_008395:8789066..8795267
| |
| − | source=RiceChromosome02
| |
| − | preset=GeneLocation
| |
| − | </gbrowseImage1>|
| |
| − | GSID = <gbrowseImage2>
| |
| − | name=NC_008395:8789066..8795267
| |
| − | source=RiceChromosome02
| |
| − | preset=GeneLocation
| |
| − | </gbrowseImage2>|
| |
| − | CDNA = <cdnaseq>atggtatgcttcgctagcctgaggagggctctgcctctgctgctgcgcgccaccaccaccaccaccccccgcttccttctccccagggccctctccggcggcgttggcggcggggcggcggtggatgcgcgcgcgcttctccgtgggcacagcgggtggcgcgggctccgggtggccgccaggatgatgctcgactcctccgactccgccgccgctgcggggcagatgcagccgcagcagcgtgcggcgggggccgtcgcctgcagcgcgcaggacggtggtgccgcagggtacgccagcggcgggtgggcgagagaagatggtaaactgaaatgtggatattcaagttttagagggaagagagccaccatggaggatttctatgatgtaaagttaactgaaatcgatggacaggctgttagcctatttggtgtatttgatggtcatggaggaccacgtgctgctgagtatttgaaggaaaatttgttcgaaaatcttctgaaacaccctgagttcctgacagatacaaagcttgccataagtgaaacatatcagaaaacagatacagatttcttagaatcagaatccaatgccttcagggatgatggttcaacagcttccactgcagttttggtgggtggccatctatatgtagcaaatgttggtgattcccgtgctgttgtttcaaaagctggtaaagctatggcactgtcagaagatcacaaacctaacaggagtgatgagcggaagagaattgaaaatgcaggaggagttgtcatttgggctggtacttggagggtaggaggtgtactggcaatgtcgcgtgcatttggcaatcgtctactgaagccatttgtggtggcagagcctgaaattcaggaagaacttgtcaatgaagacttggaatgcctcgttcttgctagcgatggactttgggatgtcgtggaaaatgaggaagctgtttcccttgcgaaaacagaagacctgcctgagtcggtggctaggaaactcacggaaatagcctattctcgaggcagcgctgacaacattacatgcatcgtggtgcaatttcaccatgataaaactgaataa</cdnaseq>|
| |
| − | AA = <aaseq>MVCFASLRRALPLLLRATTTTTPRFLLPRALSGGVGGGAAVDAR ALLRGHSGWRGLRVAARMMLDSSDSAAAAGQMQPQQRAAGAVACSAQDGGAAGYASGG WAREDGKLKCGYSSFRGKRATMEDFYDVKLTEIDGQAVSLFGVFDGHGGPRAAEYLKE NLFENLLKHPEFLTDTKLAISETYQKTDTDFLESESNAFRDDGSTASTAVLVGGHLYV ANVGDSRAVVSKAGKAMALSEDHKPNRSDERKRIENAGGVVIWAGTWRVGGVLAMSRA FGNRLLKPFVVAEPEIQEELVNEDLECLVLASDGLWDVVENEEAVSLAKTEDLPESVA RKLTEIAYSRGSADNITCIVVQFHHDKTE</aaseq>|
| |
| − | DNA = <dnaseqindica>65..378#3710..3837#3917..4015#4131..4289#4870..4956#5193..5284#5501..5575#5751..5888#ggatctcgcctcgatcgcggcggtggcggtggggaggggagcgcaccgcctgcccagccatgagatggtatgcttcgctagcctgaggagggctctgcctctgctgctgcgcgccaccaccaccaccaccccccgcttccttctccccagggccctctccggcggcgttggcggcggggcggcggtggatgcgcgcgcgcttctccgtgggcacagcgggtggcgcgggctccgggtggccgccaggatgatgctcgactcctccgactccgccgccgctgcggggcagatgcagccgcagcagcgtgcggcgggggccgtcgcctgcagcgcgcaggacggtggtgccgcagggtacgccagcggcgggtgggcgaggtaataatgataataataataataataatgaataatgcgtgtctttacactttcatggttattatagctctatgtatctgtttcgatcctaaaccatctcgttttcgcctctagtgtgaaatgaaccgtgttggcatttgaatgtggtcctttgcgctggggaattggtttggtttgttcagttgtcctgtggtggtagccaattagcatgaagaaacctgctaggccccaaatatgaaggatgcaaatgtagcagatattctgattgctattaatggcttagtggattggttctgcatgatattattcgcgcctgtacaattttgtgaaatagttaatgcgtgaaaagcttatcgtaaaacagtaatgctctaaaaggtggtaattgcgtgctcagcactattctttgcttatagataacaatcttccatttttgtggcaatgtgccgatgcgtatggatgatttttatgtagataccggaagtagtatatacatatgcaatgagttaggggctgtttgattttaagccctaagctgacaaaccaaagtttggcaatgcacatgcttttttgtcctccatttggctggtgaccacaatttgtgtgccctctctatttggcaaaggtaggcaataatttgtgtgctctctctatttggcaaaggtaggcaatagacttaccaaacttttggggacaaaatttgaatggcaatatctgaccaaattttggtggcttagcctatctccatgcccatataaaaaaatattggtaaaaccaaaacatgtttttttgctacttttttctctaggcacacatttagtcacggttattagatttcaattggacttatagatgatatatatatataattatagaagaccttagttttgtatgatgcacaacaagggcgaggtatgaacccatgatggcataaaaatccattgcctagtaagatttaagaatgtgccagcttttgaatttatgattataaagatttaagtacaagagaggaggccctattggacatatgagcttagttccaagaagatcgttatgagtggatttttacagcggatgaagaaacatggtatttgccatactaaagtttataaaccgaagagtatcccaatcacccaaacaaccaaacaatacttgtttgaatatccaccataaaaagtttggttcactttcatgccacaaaaaatgttgaagccatctcagatcagacatatcactttgttcccttccatccaaactcctgactcactaatgttgactcatgcctaggccatgttccatctagtctactacctaaacccagtcgttctgtgctcctttggtccttccccagaattctgttcctgcatcatcttcacagttaatgtcctgcaggtatgatgtttgtgtacccactcaaaattataaggacataattactcctaagagaccaaatataggactacatacatgattaaatagctaatacacgatcttcctcataatatcgcctgctgcattcatcagccaaaatgagcaaagctcactgaaatccttagctcctgtctttaacatactcaaactgggaagttagtggccatggcagcatgactggagcgataggttgtgcctcttacatatggttgcgatggagtcactatctcagcatggaagagcacagtgagggtgaaatcatttgatatgacactgattctcacttagcagggagggcgcagtgatgtgcttgtagatggacatggcattttggagattgcggggtactaggagtaagaaagtaggtaatgcagtggctcaagagacaagcggagcttcagtgaagaaagagtgtagggaggagcaggtctggttgagccattaaatatgatgggggcctggtgataagttgccatcagagactttggatggaagataccatagtggtatcagagagttgcgaagctttggttgtttttggtgaactagactttttatggtatttatgaaaaacaaaaacatttcgggctccttggaagttgaatgctgaaatttcacaggagtttcatagaggcagtttacatccaacaggaatcaggaaaaaaaattccatgttcaaaggagaccttaggttatatacttgatgttctccttaaaaagccatgcaaatagggatggataatgagcaagtttggctcgttagacttggctggtcaggttcattatgataaggagccaacttggatcagctcattaaccttaacgagctaaaagactggctcggcttattttgctaacttgagctggctcgttagcaagctagaaatgttcaaacatgtcatgtacaatttaatatttaccaatttatcatatattagcaaaatagtagcaccaagttatcatatattagtaaaatatttattaaatataaaaggatatgaagtaattctgacattaagtaatacaaatagaatggtcttttatacaaacatgcttaatgagtagcttgcaaactggctggcttggtattggctgattaagctaacgagctaaacagccagtttggcttggcttgtttagaacatgagttcaagctgaactggtccacgagctttgagcgttttgttcacccctacatgggaactccaaaaagggtacatatgcaacatgcccttaggggcatgctattgtacaagtaggtcaattgattagtgttgtcaagaaaagtaggctcctatttacatgattgcatcacagccatatggtactagtggcgctcaaatatatgttttcttaactttggatatacattgagcaccaaaagaggtgtaagcaagttacttttgaccaaactatgcaccttttttaggaaactgtcagtcatacatttcaagcaaaccagtactttatgccataatttatgtgattcccatacttttgtattgaccttttctttctcaattttggtaaagaatttgagcacttgacctagtcctgcattaataagaagactgaattgtgcgatggatcccattccttggaatatgaagtagttctataagtctgtgcttacacaatcatgatggcctcttattctagttttttcctgcatcctattttgactgccttaaaggcttaaacataccatgtttgttcaacatgcaatcatgaccgaatatatcagagtttacaatgtgatctcttttgctggaatatgggacaattaattttatctccaatgtttaaatttccatctctttacaagaatcattcattctctttggactcattatttgacatgctaccttggttaacgtaatgtccgaaaaatttgtgacagagaagatggtaaactgaaatgtggatattcaagttttagagggaagagagccaccatggaggatttctatgatgtaaagttaactgaaatcgatggacaggctgttagcctatttggtgtatttgatggtatggtttccatctttccttgtctactttcgtgattccgtgcccaccatgtttttcttttgaagatttggtgcattaggtcatggaggaccacgtgctgctgagtatttgaaggaaaatttgttcgaaaatcttctgaaacaccctgagttcctgacagatacaaagcttgccataagtaatttttctctttgattcttacctttccagttctctgttcaccttttttttaaaggttgctaatgattattatcttctcaacttttgaaaaaaaaatcaaaacataacaacaggtgaaacatatcagaaaacagatacagatttcttagaatcagaatccaatgccttcagggatgatggttcaacagcttccactgcagttttggtgggtggccatctatatgtagcaaatgttggtgattcccgtgctgttgtttcaaaagctggtaaaggtatgtaacaacacatgcttgttggatgtagtttttcatctgaacaaccacttggattcttatcattgatatctgcttaatgtttctaaatttcccagcattgatgtttttgttgaagaagtttggtacctaatgtctcatataaaccccccttggcccttctgctaacgattatttcctgtaccataatttaaggctagtgacaagggttgcttattttctagacattctggatctgatatctaggtgggatctgaattggtaacttaattactgaactcttgaaagaactaagtttacctgcatggtgctgtttctaatttgcttgggcatgtttggtttcccttcccaacctggctagccttggttcactctacaaaagtgcacatgggagtccggtttcaatactttctagtttttttattcagtttatatttgtcttccccacccatccattaacacctaaagtgcccatgggactcctgtttcaatattttctagttttttttattcagtttatatttgtcttccatacccatccattaacacctaaagattttcacttattcgttttttctagctatggcactgtcagaagatcacaaacctaacaggagtgatgagcggaagagaattgaaaatgcaggaggagttgtcatttgggctggtaagctaaatcttcattcttggatgcactgggcatagtttgcctttgtaagctcacatggacaaggcaggttgcacaaggcttgtccatttggtgccttctgatctccttgtagtttatgttaggttctctatgtcatacctgggttgtttagcattgcagccttatttacctaaaatcatgccatctctgtatatatttttctgtttgttttttaaaagtgagtttattcccaggtacttggagggtaggaggtgtactggcaatgtcgcgtgcatttggcaatcgtctactgaagccatttgtggtggcagagcctgaaattcaggtatcttattgcacttaatcatgctatgatttgtaggcctcattttatgtagtttaacctactctagttaaaggcttagcctagtctagatgaaagtcagaataggaggtatttgcagttcaacttgtctctttgtatgactcctctgctgtataattctgatcatgaccatatagcttgtgtgtgaagcttgattaatgtcttaagaaattacaggaagaacttgtcaatgaagacttggaatgcctcgttcttgctagcgatggactttgggatgtcgtggaaaatgaggtaataaaccaccaagcacattatctcaacctgaaaacgattcgaatttctcaatgaaaccactgctgcttatgtagcattgaacaaagcatcactttattgtcttctctgtctgatctgggtatacatttttaatgattgctaaattctctgataattctgtttaccaaaataggaagctgtttcccttgcgaaaacagaagacctgcctgagtcggtggctaggaaactcacggaaatagcctattctcgaggcagcgctgacaacattacatgcatcgtggtgcaatttcaccatgataaaactgaataataagatgggactagagctgatgaaaggttgaaggtttttctacttcaagctactttccagcagtccaaccacagagggggttccccaggagatgttgctcctgtagcatttgctaaggattgtttcgttgattcttttccttgtgtaggaatcattttttgttttcagaggtgttacgaacagaaaattttatttcgagtgtaacacacagttttaattggatggatactaataaatcaattgcttgtttacctaattacctgccattacgggcatggcatataattctcgatgatatatagttcttttttggc</dnaseqindica>|
| |
| − | Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001052996.1 RefSeq:Os02g0255100]|
| |
| − | }}
| |
| − | [[Category:Genes]] | |
| − | [[Category:Japonica mRNA]]
| |
| − | [[Category:Oryza Sativa Japonica Group]] | |
| − | [[Category:Japonica Genes]] | |
| − | [[Category:Japonica Chromosome 2]]
| |
| − | [[Category:Chromosome 2]]
| |
