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| − | {{JaponicaGene|
| + | The rice '''''Os09g0516300''''' was reported as '''''OsRRMh''''' in 2013 <ref name="ref1" /> by researchers from China. |
| − | GeneName = Os09g0516300|
| |
| − | Description = RNA-binding region RNP-1 (RNA recognition motif) domain containing protein|
| |
| − | Version = NM_001070206.1 GI:115480154 GeneID:4347579|
| |
| − | Length = 4802 bp|
| |
| − | Definition = Oryza sativa Japonica Group Os09g0516300, complete gene.|
| |
| − | Source = Oryza sativa Japonica Group
| |
| | | | |
| − | ORGANISM Oryza sativa Japonica Group
| + | ==Annotated Information== |
| − | Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
| + | [[File:45-Os09g0516300.png|right|thumb|327px|'''Figure 2.''' ''Expression pattern of OsRRMh in ZH11.<ref name="ref1" />.'']] |
| − | Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
| + | ===Gene Symbol=== |
| − | clade; Ehrhartoideae; Oryzeae; Oryza.
| + | *'''''Os09g0516300''''' '''''<=>''''' '''''OsRRMh,RRMh''''' |
| − | |
| + | ===Function=== |
| − | Chromosome = [[:category:Japonica Chromosome 9|Chromosome 9]]|
| + | * '''''OsRRMh''''' encodes a Spen‐like protein, and is composed of two N‐terminal RNA recognition motifs (RRM) and one C‐terminal Spen paralogue and an orthologue C‐terminal domain (SPOC). |
| − | AP = Chromosome 9:20763410..20768211|
| + | *'''''OsRRMh''''' plays an important role during the vegetative to reproductive transition in rice. |
| − | CDS = 20764135..20764350,20764490..20765576,20765664..20766415,20766516..20766563,20766667..20766909<br>,20767743..20768099|
| + | |
| − | GCID = <gbrowseImage1>
| + | ===Phenotypic analysis=== |
| − | name=NC_008402:20763410..20768211
| + | * The OsRRMh dsRNAi lines exhibited late‐flowering and a larger panicle phenotype. When full‐length OsRRMh and/or its SPOC domain were overexpressed, the fertility rate and number of spikelets per panicle were both markedly reduced. |
| − | source=RiceChromosome09
| + | * Also, overexpression of OsRRMh in the Arabidopsis fpa mutant did not restore the normal flowering time, and it delayed flowering in Col plants. |
| − | preset=GeneLocation
| + | |
| − | </gbrowseImage1>|
| + | ===Expression=== |
| − | GSID = <gbrowseImage2>
| + | * The gene has been found to be constitutively expressed in the root, stem, leaf, spikelet, and immature seed, and alternative splicing patterns were confirmed in different tissues, which may indicate diverse functions for '''''OsRRMh'''''. |
| − | name=NC_008402:20763410..20768211
| + | * RT-PCR analysis showed that '''''OsRRMh''''' exhibited the highest expression level in the leaf and immature seed, while the lowest was found in the root and stem. |
| − | source=RiceChromosome09
| + | |
| − | preset=GeneLocation
| + | |
| − | </gbrowseImage2>| | + | You can also add sub-section(s) at will. |
| − | CDNA = <cdnaseq>atgtcgtcggagccgccgccgccgcagccgcagccgcaggaggcggcgggccgggaggcgtcgtcctccctctcccccgcgaaggaatctgccgccggtggaggcggggtcggggggtcgggggcaccggagacgaacacgctgtgggtgggcaacctgcccgcgcaggcggcggaggacgacgtgatggcgtccttctccccgcacggcgcgctcgactgcgtcatggcccgcgcgggcccgcggagctacgcgttcgtgctgttccgctccgtcccggaggcccgcgccgccctcgacgcgctccagggctccaaggtcaagggcagcgtcgtccggctcgagttcgcccggccggctagagctgttaagaacttatgggttggtggcattagctcctcaatttcaaaggaggagctggaggaggagtttaagaaatttggaaaggttgatggtattgcattctctcgtgatcagacttccgcgtacattgattttgacaagctggaagatgcaatttcggcacatagagccttgaatggaagagttttaggtggacaagaactgtgtgttgatttccaaaggtccaggggcagagcggaatggttggagacaggcagcttcaatggtagaactggacctgcaaagggttatggagtacgaaatcgagaatccaatcccaccaatgttctttgggtaggtttccctaatacagctaaaatcaatgaggaggcacttcggcaagcgatggctgtacatggtgctgttacaaatacaaaagttttcccaacaaggcaatatgcttttgtggagtttgcaacagttggggaagcttctaatgctaagaaaaatctagatggtcgtcttttcaatgatcagagaattcaaattcttttctcgaacagtgagcttgcgccaaataaattagataatccaacagcagtttctggatttccaaaatcagagatgtattatgatgatggtcagtatggcgcttctgattattttgatcctcgacggggaagatcaagatactttgagtacagtggtgtccctgtttctggtggtattcttccatcaccggaatctggaaatcctctcttaactggacgatctgctcagagtacattcgatccaagagaagccaagaggttgcggttggatgctgcagctgacccttatgatacaagggcaggtagtgagggtctttattctgctgggtactctcagcgcgagagtgcacgttctgagaggagctcaagtcctgctattcgaatccatggcacagtgcaccgaacatcataccttgagcacttctggcgtggtagcattgccaaaggtggatctcctgtatgtcgtgctcgctgtttgcctataaggaagggtgttgagatacctttaccggatgttgttaattgttccgctagaactggactagatatgctggcaaagcattatagagacgcttcagggtttgatatcgtcttcttcttgccagatagtgaagatgactttgtttcttacactgaatttttgcgctacttaggctcaaaaagtcgggcaggggttgtaaaggttgatggggggactactttatttttggtcccaccttccgattttttacgaaatgttttgcaagttgatggtccagaacgtctttacggtgtagtattacacattccgcaaatgtctgctgctgctcctgcttctgctcccactcctgctgtacaaaggccacaactaactgcaccagaatcacaaccttactacgatgaaagggaaattcctttgcagagaaggtatagtatgattacgcctagcaacaatcaccatcgagatgctgatcaccgtggatctttacgtgaggattcattgcatcaattggggcaaattcttgcacgacctcgggtggatgaaggacaagtagttcagccaaaccttgccggtatccctacaaacgcaggactacaggtacagccttcactccagcctgatatgatagccactttagctaaacttttgccaagtgggcagtcatcagctctggtcactggccagcttcccctgagctcaacagaccaacctgcattaacccaaatgaatgatgcatctactcttgcaaaagtatggagacctgaaaatcaagcaatggcttctacttcatccttagagcagatcggtaatttccagcattcaggacaacagttcagcaaacaagctggagcagttcatctgccaaactatgggaacttggcaggtgcacaggagcacccaacacaacatagtgcttacaatcctgaaatgactctaaacttgccaccaccaccaccacctcctacgctgccacccagttctgctatattatcatcgcaagttggacacagtttgcctacgcagatgagtcagcaacagtatcaaccagagcagtattatatgactcaaagcaattatggtcaattggccacagttagcagttctaatcttcaggcgcaccatcaacaaattgttgcgactcctgctgcacaagctcctgttgctgcgcaattccctcctgctatgcaagctcctgctgccgcacaagctcctgttgctgcacaagcttctgctgacgaggcagaacggaacaggaagtatcaggcgactcttcagttggctcagcgcctgttgggtcagctacaacagaagcctggaaatcaaccttaa</cdnaseq>|
| + | |
| − | AA = <aaseq>MSSEPPPPQPQPQEAAGREASSSLSPAKESAAGGGGVGGSGAPE TNTLWVGNLPAQAAEDDVMASFSPHGALDCVMARAGPRSYAFVLFRSVPEARAALDAL QGSKVKGSVVRLEFARPARAVKNLWVGGISSSISKEELEEEFKKFGKVDGIAFSRDQT SAYIDFDKLEDAISAHRALNGRVLGGQELCVDFQRSRGRAEWLETGSFNGRTGPAKGY GVRNRESNPTNVLWVGFPNTAKINEEALRQAMAVHGAVTNTKVFPTRQYAFVEFATVG EASNAKKNLDGRLFNDQRIQILFSNSELAPNKLDNPTAVSGFPKSEMYYDDGQYGASD YFDPRRGRSRYFEYSGVPVSGGILPSPESGNPLLTGRSAQSTFDPREAKRLRLDAAAD PYDTRAGSEGLYSAGYSQRESARSERSSSPAIRIHGTVHRTSYLEHFWRGSIAKGGSP VCRARCLPIRKGVEIPLPDVVNCSARTGLDMLAKHYRDASGFDIVFFLPDSEDDFVSY TEFLRYLGSKSRAGVVKVDGGTTLFLVPPSDFLRNVLQVDGPERLYGVVLHIPQMSAA APASAPTPAVQRPQLTAPESQPYYDEREIPLQRRYSMITPSNNHHRDADHRGSLREDS LHQLGQILARPRVDEGQVVQPNLAGIPTNAGLQVQPSLQPDMIATLAKLLPSGQSSAL VTGQLPLSSTDQPALTQMNDASTLAKVWRPENQAMASTSSLEQIGNFQHSGQQFSKQA GAVHLPNYGNLAGAQEHPTQHSAYNPEMTLNLPPPPPPPTLPPSSAILSSQVGHSLPT QMSQQQYQPEQYYMTQSNYGQLATVSSSNLQAHHQQIVATPAAQAPVAAQFPPAMQAP AAAQAPVAAQASADEAERNRKYQATLQLAQRLLGQLQQKPGNQP</aaseq>|
| + | ==Labs working on this gene== |
| − | DNA = <dnaseqindica>3862..4077#2636..3722#1797..2548#1649..1696#1303..1545#113..469#accccacctcatcgcctcagaattcagaaacgaaagccaaaaaaaaaaaaaaaaaaaaatccccatctgctttagggtttccgtcgatctctctccctcgcgcgcgccgccgatgtcgtcggagccgccgccgccgcagccgcagccgcaggaggcggcgggccgggaggcgtcgtcctccctctcccccgcgaaggaatctgccgccggtggaggcggggtcggggggtcgggggcaccggagacgaacacgctgtgggtgggcaacctgcccgcgcaggcggcggaggacgacgtgatggcgtccttctccccgcacggcgcgctcgactgcgtcatggcccgcgcgggcccgcggagctacgcgttcgtgctgttccgctccgtcccggaggcccgcgccgccctcgacgcgctccagggctccaaggtcaagggcagcgtcgtccggctcgagttcgcccggccggtgagatgccttctcttcttacaccttgcctggatctactgtctccttcgatttccccccatgaggtgaggctggtgcctcggtgatgtgatttttgtggcggtaactagggtttcgatgagtgtgttttgtagcagcctcgcataggaggaaacgattttgtgtttttatctggtgccctcacggattgtggtgaggctggtgcctcggtgatgtgatttttgccgcggtaactagggttttgatgtgtgtgctttctatcctcgcataagaggaaacgattttatggcgctgctgattagctagatttaggtggtgtcgaacttgggcttatgatacacagatttgttttgtggttgcaaagttaaataaatgctgtttactgatccttagttgtttttgtgggaaacgattttgtggcatacatgctgctgccatgctgtgcaattagagatatatgcacgaaaccggctgcaatcttactttgatgttatctttaccctagctttatgtgattcagcatctactccgtgttatatggaagagatcattgtctactgaattgggacggttgcttgtttcatgactagtgacatgcttatacgggaaattgtttcagatgtcttgagttccctatgttttaacatgctataatctacagtgtcttgactgtattctgtgttttgattttagtaaacacaggcattacttttgctctcttgacagtttttattcctagttctatttagacgaggattttgcgtttcccatttctttgctgaaatacgtgccatgccttctgataaaccatgttccttgatttatcttttcaggctagagctgttaagaacttatgggttggtggcattagctcctcaatttcaaaggaggagctggaggaggagtttaagaaatttggaaaggttgatggtattgcattctctcgtgatcagacttccgcgtacattgattttgacaagctggaagatgcaatttcggcacatagagccttgaatggaagagttttaggtggacaagaactgtgtgttgatttccaaaggtccaggggcagagcggtgtgtatccattaattatatgtattgatatactgtttgcattttcttggtaacaagcttatgaatgttcttgttgcatgtaatatttctgaattttttttaggaatggttggagacaggcagcttcaatggtagaactggacctgcaaaggtattttctgtttgcatttcctttcttgtattactggttgtttttctgttatatctgctgatgttgctaactatcgtttcatattctgttggcatgtcagggttatggagtacgaaatcgagaatccaatcccaccaatgttctttgggtaggtttccctaatacagctaaaatcaatgaggaggcacttcggcaagcgatggctgtacatggtgctgttacaaatacaaaagttttcccaacaaggcaatatgcttttgtggagtttgcaacagttggggaagcttctaatgctaagaaaaatctagatggtcgtcttttcaatgatcagagaattcaaattcttttctcgaacagtgagcttgcgccaaataaattagataatccaacagcagtttctggatttccaaaatcagagatgtattatgatgatggtcagtatggcgcttctgattattttgatcctcgacggggaagatcaagatactttgagtacagtggtgtccctgtttctggtggtattcttccatcaccggaatctggaaatcctctcttaactggacgatctgctcagagtacattcgatccaagagaagccaagaggttgcggttggatgctgcagctgacccttatgatacaagggcaggtagtgagggtctttattctgctgggtactctcagcgcgagagtgcacgttctgagaggagctcaagtcctgctattcgaatccatggcacagtgcaccgaacatcataccttgagcacttctggcgtggtagcattgccaaaggtggatctcctgtatgtcgtgctcgctgtttgcctataaggaagggtgttgagatacctttgtatgtatacactcaccatcttaatcttgttctctacagttgatttctatagcctctggatcttacacatattccactgttttgcagaccggatgttgttaattgttccgctagaactggactagatatgctggcaaagcattatagagacgcttcagggtttgatatcgtcttcttcttgccagatagtgaagatgactttgtttcttacactgaatttttgcgctacttaggctcaaaaagtcgggcaggggttgtaaaggttgatggggggactactttatttttggtcccaccttccgattttttacgaaatgttttgcaagttgatggtccagaacgtctttacggtgtagtattacacattccgcaaatgtctgctgctgctcctgcttctgctcccactcctgctgtacaaaggccacaactaactgcaccagaatcacaaccttactacgatgaaagggaaattcctttgcagagaaggtatagtatgattacgcctagcaacaatcaccatcgagatgctgatcaccgtggatctttacgtgaggattcattgcatcaattggggcaaattcttgcacgacctcgggtggatgaaggacaagtagttcagccaaaccttgccggtatccctacaaacgcaggactacaggtacagccttcactccagcctgatatgatagccactttagctaaacttttgccaagtgggcagtcatcagctctggtcactggccagcttcccctgagctcaacagaccaacctgcattaacccaaatgaatgatgcatctactcttgcaaaagtatggagacctgaaaatcaagcaatggcttctacttcatccttagagcagatcggtaatttccagcattcaggacaacagttcagcaaacaagctggagcagttcatctgccaaactatgggaacttggcaggtgcacaggagcacccaacacaacatagtgcttacaatcctgaaatgactctaaacttgccaccaccaccaccacctcctacgctgccacccagttctgctatattatcatcgcaagttggacacagtttgcctacgcagatgagtcagcaacagtatcaaccagagcagtattatatgactcaaagcaattatggtcaattggccacagttagcagttctaatcttcaggtcagcaattctaacatcccatttcttccttattcccaagtaaaccttgccaacaaataatcagatagggtttttggcagtgtttcagcatgctttgactttgcctaatgatagggtaaactatggtttctctttacaggcgcaccatcaacaaattgttgcgactcctgctgcacaagctcctgttgctgcgcaattccctcctgctatgcaagctcctgctgccgcacaagctcctgttgctgcacaagcttctgctgacgaggcagaacggaacaggaagtatcaggcgactcttcagttggctcagcgcctgttgggtcagctacaacagaagcctggaaatcaaccttaaggctatcctggaaatcaaccttcaggctaagttacttattcaggtacgttttatgtgctgctctgcaattgttctttccgtgccatttacaacttctctgctatgaaattaggtatcaagtgaaatatccaaacagattcaggcattcagctaatcgtaggtgtagtatatgcacttcttaaaagttaaaaccagaaactctgctaacaagttttgtaggctttatttctgctagggcatagtccaatttaggcgaacaagggagatatgatagtttgcatcatacttgttcccttgtattttgttcaagcatatcttaacaaagttgaggtttttttccttagaaaaacaaatatatatatatgacaaactattaagatgacttttaaacttggaatttaaactattaaggttagcttatgcatatcacggattataattgtggctggttacagttttagatctttttagtgagacacgtttaccattttctgtgcatttgctattgatagtatttaatttatagttgtgtgatatgttatctgcatattcttgtgttattctagtatatacaatgcttaggttgttctacgagtgtgcataccatacacaagcattcaagttatttgatttgataaatgtatgaacttctttcatgtaataagctttgtggtaatctaaagtagcgaaccttatctgaaatgaacccaaaatcacattttgcc</dnaseqindica>|
| + | * National Key Laboratory of Plant Molecular Genetics, Institute of Plant Physiology and Ecology, the Chinese Academy of Sciences, Shanghai 200032, China |
| − | Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001070206.1 RefSeq:Os09g0516300]|
| + | * University of Chinese Academy of Sciences, the Chinese Academy of Sciences, Beijing 100049, China |
| − | }}
| + | |
| − | [[Category:Genes]] | + | ==References== |
| − | [[Category:Japonica mRNA]]
| + | <references> |
| − | [[Category:Oryza Sativa Japonica Group]] | + | * <ref name="ref1"> |
| − | [[Category:Japonica Genes]] | + | Liu D, Cai X. OsRRMh, a Spen-like gene, plays an important role during the vegetative to reproductive transition in rice. J Integr Plant Biol. 2013 Sep;55(9):876-87. doi: 10.1111/jipb.12056. Epub 2013 Aug 26. PubMed PMID: 23621499. |
| − | [[Category:Japonica Chromosome 9]]
| + | </ref> |
| − | [[Category:Chromosome 9]]
| + | </references> |
| | + | |
| | + | ==Structured Information== |
| | + | [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 9]] |
