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| − | {{JaponicaGene|
| + | The rice '''''Os01g0670800''''' was reported as '''''OsETTIN2''''' in 2014 <ref name="ref1" /> by researchers from Japan. |
| − | GeneName = Os01g0670800|
| |
| − | Description = Transcriptional factor B3 family protein|
| |
| − | Version = NM_001050360.1 GI:115439090 GeneID:4325895|
| |
| − | Length = 5676 bp|
| |
| − | Definition = Oryza sativa Japonica Group Os01g0670800, complete gene.|
| |
| − | Source = Oryza sativa Japonica Group
| |
| | | | |
| − | ORGANISM Oryza sativa Japonica Group
| + | ==Annotated Information== |
| − | Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
| + | ===Gene Symbol=== |
| − | Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
| + | *'''''Os01g0670800''''' '''<=>''' '''''OsETTIN2,ETTIN2,OsETT2,ETT2''''' |
| − | clade; Ehrhartoideae; Oryzeae; Oryza.
| + | |
| − | |
| + | ===Function=== |
| − | Chromosome = [[:category:Japonica Chromosome 1|Chromosome 1]]|
| + | * The rice '''''OsETTIN2''''' genes promote awn development in rice. |
| − | AP = Chromosome 1:29257352..29263027|
| + | * '''''OsETTIN2''''' is involved in awn development in rice. |
| − | CDS = 29257849..29257914,29257985..29258853,29258940..29259099,29259724..29259796,29259899..29260018<br>,29261042..29261206,29261283..29261373,29261969..29262053,29262143..29262328<br>,29262431..29262487,29262586..29262870|
| + | * '''''DL''''' and '''''OsETT2''''' act independently in awn formation, and that either gene alone is not sufficient for awn development. |
| − | GCID = <gbrowseImage1>
| + | * The researchers hypothesize that loss of expression of OsETT2 in the awn primordium is probably associated with the failure of awn formation in japonica strains. |
| − | name=NC_008394:29257352..29263027 | + | |
| − | source=RiceChromosome01
| + | ===Expression=== |
| − | preset=GeneLocation
| + | * '''''OsETT2''''' is expressed in some parts of spikelet organs, such as the lemma, palea and carpel, we focused on OsETT2 expression in the developing awn. |
| − | </gbrowseImage1>|
| + | * In Kasalath, '''''OsETT2''''' was expressed in the putative awn primordium at the top of the lemma (Figure 6g). |
| − | GSID = <gbrowseImage2>
| + | * Subsequently, '''''OsETT2''''' was expressed in both epidermal and sub-epidermal tissues in the elongating awns, in addition to provascular tissues (Figure 6h). |
| − | name=NC_008394:29257352..29263027
| + | * In contrast to Kasalath, OsETT2 transcripts were not detected in the awn primordium of Nipponbare or T65, except for the provascular bundle (Figure 6i,j). |
| − | source=RiceChromosome01
| + | |
| − | preset=GeneLocation
| + | |
| − | </gbrowseImage2>| | + | |
| − | CDNA = <cdnaseq>atggtgggcatcgacctcaacaccgtggaggaggaggaagacgaggaggagggcggcgccaccggcaccgtcacggcgcctgcggaggcgagggcggggggcgcggtgtgcctggagctgtggcacgcctgcgctggccccgtggcgccgctgccgcggaagggcagcgccgtcgtgtacctgccgcagggccacctcgagcacctcggggccgcgcccggctccggccccggcgccgcggtgccgccgcacgtgttctgccgcgtcgtcgacgtcagcctccacgcggacgccgcgacggacgaggtgtacgcgcaggtctcgttggtcgccgacaacgaggaagtggagaggcggatgcgggagggagaggacggcgcggcctgcgacggcgagggcgaggacgccgtgaagcggccggcccggattccccacatgttctgcaagacgctcacggcctccgacaccagcacgcacggcggcttctccgtgcctcgccgcgccgccgaggactgcttcccgccgctggactacagcctgcagaggccattccaggagctcgtggcaaaggatctgcacggcacggaatggaggttcagacatatctatcgaggccaaccacggaggcaccttttaaccactggatggagcgggtttatcaacaagaagaagctagtatctggggatgcagtgctattcctcagaggtgaagatggagagcttcgattgggagtgcgccgagctgctcagctaaaaaatgcatctccttttcctgcacttcataaccagatctcaaatactagtagtcttagtgaagttgcacatgctgtggccgtgaaaagtatttttcacatctactacaatcccaggttaagtcagtctgagttcattataccatattggaagtttatgagaagcttcagtcaacccttttctgttggaatgcgattcaaattgagatatgagagtgaggatgcttctgaaagaaggcgtactggaataataattggaagcagagaggcagatccaatgtggcatggttcgaagtggaaatgtttagtggtgaaatgggatgatgatgtggagtgccgtcggcctaatggggtatctccttgggagattgagcttagtggatcagtttcaggatctcatctgtccactccccattcaaaacggctgaaatcatgcttcccccaagttaatccagatattgtgcttccaaatggaagtgtttcttcagattttgcggagtctgccagattccacaaggtcttgcaaggtcaagaattgttgggtttaaaaactcgtgatggtactgttaatacagcttctcaggcgactgaggcaagaaattttcagtacactgatgaacgaagttgctctatcaacatgagtaacaatatcttaggggttccgagacttggggtgaaaactccaagtggaaaccctgggttttcctaccattgctcaggctttggggaatctcaaagattccaagaggtcttgcaaggtcaagaagtgtttcgtccttaccgaggagggactttgtccgatgcctgtataagaggttctggcttccgtcaacctgatggcaaccatgcacctggtgcagcatttaaatggcttgcaccacaaggatgtgatcatcatgggataaccacatcagttctgccgcaagcatcctctccatcatctgtcttaatgtttccacaaactagttcaaagatgcctggccttgaatacatatacggatgcctggatagaaatgagaatagccgacattttaagattggacctacacaagatatgacaagaactgatcaaacattacgactctggcctcatcttatttcaggcaaagtgctagatgagtgtacgagaaatgagaagctgcactctccagtcagtggtgctgagcatgaatcaaataacaagtgtcttaatacaaatggctgcaaaatctttggtatatcattgactgaaaaggcccaagcaggcgatgaagtggattgtggcaatgccagttatcattctcggctccagtctttaaaaccacagatgccaaaatcattgggcagcagttgtgccacggtccatgaacaaaggcctgttgttggcagggtcgttgatatttcagcagtgaatacgatgatctga</cdnaseq>|
| + | [[File:50-Os01g0670800.png|center|thumb|927px|'''Figure 6.''' ''In situ localization of OsETT2 transcripts.<ref name="ref1" />.'']] |
| − | AA = <aaseq>MVGIDLNTVEEEEDEEEGGATGTVTAPAEARAGGAVCLELWHAC AGPVAPLPRKGSAVVYLPQGHLEHLGAAPGSGPGAAVPPHVFCRVVDVSLHADAATDE VYAQVSLVADNEEVERRMREGEDGAACDGEGEDAVKRPARIPHMFCKTLTASDTSTHG GFSVPRRAAEDCFPPLDYSLQRPFQELVAKDLHGTEWRFRHIYRGQPRRHLLTTGWSG FINKKKLVSGDAVLFLRGEDGELRLGVRRAAQLKNASPFPALHNQISNTSSLSEVAHA VAVKSIFHIYYNPRLSQSEFIIPYWKFMRSFSQPFSVGMRFKLRYESEDASERRRTGI IIGSREADPMWHGSKWKCLVVKWDDDVECRRPNGVSPWEIELSGSVSGSHLSTPHSKR LKSCFPQVNPDIVLPNGSVSSDFAESARFHKVLQGQELLGLKTRDGTVNTASQATEAR NFQYTDERSCSINMSNNILGVPRLGVKTPSGNPGFSYHCSGFGESQRFQEVLQGQEVF RPYRGGTLSDACIRGSGFRQPDGNHAPGAAFKWLAPQGCDHHGITTSVLPQASSPSSV LMFPQTSSKMPGLEYIYGCLDRNENSRHFKIGPTQDMTRTDQTLRLWPHLISGKVLDE CTRNEKLHSPVSGAEHESNNKCLNTNGCKIFGISLTEKAQAGDEVDCGNASYHSRLQS LKPQMPKSLGSSCATVHEQRPVVGRVVDISAVNTMI</aaseq>|
| + | |
| − | DNA = <dnaseqindica>5114..5179#4175..5043#3929..4088#3232..3304#3010..3129#1822..1986#1655..1745#975..1059#700..885#541..597#158..442#gcctctcctcacccactccgctctccgctccattaaacccaagcgagggacctcgatcgcctcccctcctcgcttccctccccgtctctcctctttcgaccgcgttggaagcaagcgcggcggcggcgcggcgagctgccggtggggggttgcggctatggtgggcatcgacctcaacaccgtggaggaggaggaagacgaggaggagggcggcgccaccggcaccgtcacggcgcctgcggaggcgagggcggggggcgcggtgtgcctggagctgtggcacgcctgcgctggccccgtggcgccgctgccgcggaagggcagcgccgtcgtgtacctgccgcagggccacctcgagcacctcggggccgcgcccggctccggccccggcgccgcggtgccgccgcacgtgttctgccgcgtcgtcgacgtcagcctccacgtgagtgcgctcgccgcttgctgctctcgcgcgagcgcaatgtgttcgaggtattgattgagagagagggtctgctcctcccgttgtgctgtttgcaggcggacgccgcgacggacgaggtgtacgcgcaggtctcgttggtcgccgacaacgaggtgcgtttgcgtgcgtgctgatccaaaaatgggatgaatatctttgacattcggtcagtgctagtagctcaaacgaacattatttctgggtggttttttcaggaagtggagaggcggatgcgggagggagaggacggcgcggcctgcgacggcgagggcgaggacgccgtgaagcggccggcccggattccccacatgttctgcaagacgctcacggcctccgacaccagcacgcacggcggcttctccgtgcctcgccgcgccgccgaggactgcttcccgccgctggtacgggacgatatcgattgggacaagctacctcaccgtgatctgtttgattgcttgtgtggtgactctgttcagcttggcgcctgcaggactacagcctgcagaggccattccaggagctcgtggcaaaggatctgcacggcacggaatggaggttcagacatatctatcgaggtgattcgccggtttagcctatcttggtgactgggatatcagccgtactatcactaactaccatatatatgtcatacagcttggttgttaggcttctccctgggaacatgggattaattttcttaatgcgtgagagaacctagtaacctacgggctgtacagtcctacatcttcctatagtacatcacaggctgtttaggttgaactactgtactttgttcaccgaataacgcattagtatatatatgttttttcttttagtaagattatccaggtctcctttttagatacatctatcatgtctaggtattggaagcgagatggctgtccagtttagacgaaacaagcaaaccaaactgtaacttggctggctggatgagataaaaatgagcaaactatgctattttttctcattaggctctgctcacttactctgggagtgttttcaataaattattttaatttatgcatagactacctatttctacagctattgcgacataatctctaatagttaagctaattgcaatttggaggagtcttgagaaaattatggtccatgaatatctcataggtctgcctctaattgttacaggccaaccacggaggcaccttttaaccactggatggagcgggtttatcaacaagaagaagctagtatctggggatgcagtgctattcctcaggtaggcctatagctcatgtgctcatgaaccactaactcgaaatgtactaaagcttctcttttgtaatgatctccagaggtgaagatggagagcttcgattgggagtgcgccgagctgctcagctaaaaaatgcatctccttttcctgcacttcataaccagatctcaaatactagtagtcttagtgaagttgcacatgctgtggccgtgaaaagtatttttcacatctactacaatcccaggtaataaagtactttcctgattttttgaatatttaaatacctgtacctgtagatgttatttgcacaagtaaccatcataaaaataagtacaagtcacagatgcacataatattgcacatactgtacttttccaaccagtcaaataatcaaccatataataagaggatgtcggacagacagacacagcaatagcttgtgatagaacaagttatacataccatatgagctagagaatattaatatttattccttgtttcctcatgtcaagttcaaactccagatcatataagttggtggcatgttttcagtcatccagaaaatttccaatgctgacatttttcaaatgctcattgtttatatcatggaactggacttgtaattttgtattagaattgcaacattgtaaagtttagttccggctttttctaatccaaccttttggtatgtgaatagtagtttcctggctgactttgctgatctcgaccatgtagaatattgtgttgtttttaccacatttaatttgctgaatatatttgttttctcggatatactaaatgatgccacattgccattgcatgtgttcctcgaaagtgttgaggaagtgcacattgaagcagcaatatgatttaagaggatgtatctaattttcttgttttcaaatggtcatgtgtggtttactgctttactttcatgtgtggtttagcaatatagatttcagaggatgtatctaattgtcaccattttgcaataatcgagcaattttaacaatgttttgtgctatttctaagatacatcagataaaaaaaagaaggataattcagttccattgtagtgataatggtctttctttcaaatgatattcatgcatttgcaatgtgcaacttctgactgttcttctgcatgctatgtcctaatgtggatatggttaaaagtcttcagagttacagattttctttttgtctgcttctcttgttggataatgtcttgatgtcagttcctgcctttaataagttgtactcacaggttaagtcagtctgagttcattataccatattggaagtttatgagaagcttcagtcaacccttttctgttggaatgcgattcaaattgagatatgagagtgaggatgcttctgaaagaaggtattatccaacagttatatttcatgttttgcgaaatggcattacaatggtaaagatatttctagctcgtgcttggtttttcataaagaatttgtttttcaggcgtactggaataataattggaagcagagaggcagatccaatgtggcatggttcgaagtggaaatgtttagtggtatgcgctcttatatataatactgctttgcacagatggatgccagtagttctcttatttgatgttttactgcctagtgggtccgtgtctttcaaatagcagagtgcttctctgtattcagcattcaacattttgtgttccatgtcttagctttttatctgttgggaagttatagtttgtacaatccaaaattttgaatagatttaatggctcatacaagggtaaattacggaaacaaaggcatttaacctttttatgtgaaataaactagcttaaagtttatttttgtgaacttatgaaagtattggtcaagatttcagtgtttgcagcgcatatgtaaattcgtgtttgcagcgcatatgtaaattcttggtgtacttcaggttctatatctatgtttttctgaacacacaagtttagaagcatttgatatgatgaaccctgaaaaatagcgccctgcacttctgcttatcagcttataggatagaatatagaggttgaagggcatactttacatgccatagtgggcagggcatcgtctttactttgttaaaattttctccatttatattccaaatctttatcatgttcctgatttctagtattgtattgtgatggtgacaggtgaaatgggatgatgatgtggagtgccgtcggcctaatggggtatctccttgggagattgagcttagtggatcagtttcaggatctcatctgtccactccccattcaaaacggctgaaatcatgcttcccccaagttaatccagatattgtgcttccaagtaggttccatttacaagtcaaaggaatcattttctgtgctgcatgttccctgttgaactcacttttccttttcccattttggcagatggaagtgtttcttcagattttgcggagtctgccagattccacaaggtcttgcaaggtcaagaattgttgggtttaaaaactcgtgatggtactgttaatacagcttctcaggcgactgaggcaagaaattttcagtacactgatgaacgaagttgctctatcaacatgagtaacaatatcttaggggttccgagacttggggtgaaaactccaagtggaaaccctgggttttcctaccattgctcaggctttggggaatctcaaagattccaagaggtcttgcaaggtcaagaagtgtttcgtccttaccgaggagggactttgtccgatgcctgtataagaggttctggcttccgtcaacctgatggcaaccatgcacctggtgcagcatttaaatggcttgcaccacaaggatgtgatcatcatgggataaccacatcagttctgccgcaagcatcctctccatcatctgtcttaatgtttccacaaactagttcaaagatgcctggccttgaatacatatacggatgcctggatagaaatgagaatagccgacattttaagattggacctacacaagatatgacaagaactgatcaaacattacgactctggcctcatcttatttcaggcaaagtgctagatgagtgtacgagaaatgagaagctgcactctccagtcagtggtgctgagcatgaatcaaataacaagtgtcttaatacaaatggctgcaaaatctttggtatatcattgactgaaaaggcccaagcaggcgatgaagtggattgtggcaatgccagttatcattctcggctccagtctttaaaaccacagatgccaaaatcattgggcagcagttgtgccacggtaagtgctcaatgaaatgttcttttggcatcttcttcctgaaattgcttgctaaccgaattatttacaggtccatgaacaaaggcctgttgttggcagggtcgttgatatttcagcagtgaatacgatgatctgatacatttactgtatccagggagtatgcttgcagaaatagggaccaacattagtatcatactcactggtgctgaggacacaacttccattctggctatctcgtccctctacgtgcttgttgcctcaacttcagcatttccacaggctgtgctaccgcatccaggatgatgacaggggaaatgcagatgatacacgaaggatgcttgtcaagtttgttgtaatgcacttctaagttctaagctttgaacctcttaacgttgctcctattttaagctcccgttgtaatcggcatttatgttgcctgacctacttgcatatttttcaatttgtccgttaagacagcccttttagagggcttgcttatgttagcaacccttaatttccaaattccaagtatggcgaccgttcgaggggtttgtttgctcctgggacgacatcggtacatgacatagaatccattggtgacaccagggcacatcagaattaaggtgtagggcg</dnaseqindica>|
| + | |
| − | Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001050360.1 RefSeq:Os01g0670800]|
| + | You can also add sub-section(s) at will. |
| − | }}
| + | |
| − | [[Category:Genes]] | + | ==Labs working on this gene== |
| − | [[Category:Japonica mRNA]]
| + | * Department of Biological Sciences, Graduate School of Science, The University of Tokyo, Bunkyo–ku, Tokyo 113–8657, Japan |
| − | [[Category:Oryza Sativa Japonica Group]] | + | |
| − | [[Category:Japonica Genes]]
| + | ==References== |
| − | [[Category:Japonica Chromosome 1]] | + | <references> |
| − | [[Category:Chromosome 1]]
| + | * <ref name="ref1"> |
| | + | Toriba T, Hirano HY. The DROOPING LEAF and OsETTIN2 genes promote awn |
| | + | development in rice. Plant J. 2014 Feb;77(4):616-26. doi: 10.1111/tpj.12411. |
| | + | PubMed PMID: 24330191. |
| | + | </ref> |
| | + | </references> |
| | + | |
| | + | ==Structured Information== |
| | + | [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 1]] |
