Difference between revisions of "Os02g0606000"

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(Created page with "{{JaponicaGene| GeneName = Os02g0606000| Description = Conserved hypothetical protein| Version = NM_001053909.1 GI:115447188 GeneID:4329921| Length = 3716 bp| Definition ...")
 
(Annotated Information)
 
(9 intermediate revisions by 3 users not shown)
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{{JaponicaGene|
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The rice '''''Os02g0606000''''' was reported as '''''OsDG2''''' in 2013 <ref name="ref1" /> by researchers from China.  
GeneName = Os02g0606000|
 
Description = Conserved hypothetical protein|
 
Version = NM_001053909.1 GI:115447188 GeneID:4329921|
 
Length = 3716 bp|
 
Definition = Oryza sativa Japonica Group Os02g0606000, complete gene.|
 
Source = Oryza sativa Japonica Group
 
  
  ORGANISM  Oryza sativa Japonica Group
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==Annotated Information==
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
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[[File:Os02g0606000.png|right|thumb|427px|'''Figure 1.''' ''Characterization of the osdg2 mutants.<ref name="ref1" />.'']]
            Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
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===Function===
            clade; Ehrhartoideae; Oryzeae; Oryza.
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* '''''OsDG2''''' gene encoded a novel chloroplast-targeted GRP in rice.  
|
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* Disruption of the '''''OsDG2''''' would lead to delayed greening phenotype and affected expression levels of genes associated with chloroplast development at early leaf stage of rice.
Chromosome = [[:category:Japonica Chromosome 2|Chromosome 2]]|
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AP = Chromosome 2:24603097..24606812|
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===Phenotypic analysis===
CDS = 24604557..24604796,24605444..24605680,24606069..24606344|
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* Leaves of the osdg2 mutant displaying a delayed greening phenotype were characterized with bright yellow until three-leaf stage, thereafter, the emerging leaves turned to green (Fig. 1A).  
GCID = <gbrowseImage1>
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* Likewise, the contents of Chl a, b, and Car for the 3rd leaves were significantly reduced in osdg2 mutant (Fig. 1B), but those for the 4th leaves reached a normal level as WT Jiahua 1 (Fig. 1D).  
name=NC_008395:24603097..24606812
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* This result is in accordance with the leaf phenotype of osdg2 mutant.
source=RiceChromosome02
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preset=GeneLocation
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===Expression===
</gbrowseImage1>|
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* RT-PCR analysis showed that the '''''OsDG2''''' transcripts were highly expressed in leaves and undetectable in other tissues, showing the tissue-specific expression.
GSID = <gbrowseImage2>
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name=NC_008395:24603097..24606812
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===Subcellular localization===
source=RiceChromosome02
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* Subcellular localization results showed that '''''OsDG2''''' was targeted in chloroplasts.
preset=GeneLocation
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</gbrowseImage2>|
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You can also add sub-section(s) at will.
CDNA = <cdnaseq>atgagctacttcacttgcaagccgaacagtgggcttattgtggataggcccgtcgctggtcttgggaggacaggcagattactatctcatcctcaatattccctaacgacacattctgttcgatttcccaagcttcaaaagcaggtgtacccgcgacttgttcttgttgctgctagccagaaaaagcttcctcctctatgtgcctcgagtggaaaggtgaacccagaggcagaaaatgatccctttatggaatctttgaagaaggccatggatgatgccaaaaagccacggcctattcaagacttgctgaaagaacagatagctaagctgagagaacaaggatctggtggaggtggaggaaaccgaaatcgtcgtggaggcagtggtgattctggtggcccagaagatgaatcattcaaggaatcattggatgaactagtccaagttatcttagcaaccgttgcattcattcttgtgtacatccatataatcagaggtgaggagctgtatcgcctcgccagggactacaccagatatcttgttactggcaagcgtactgcgcggttgaaacgtgccatgcaaaaatggcgcaatttctcagagagctttatgcaaagtgaaggctcacaagaagaccagtatgaaagagcagccacctccaaaccaacttggtggcaacagcctcaaaagtttgttcatcttatggaggaactctgccgaggaaattggcgcccgcatgcgcaggagtcttag</cdnaseq>|
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AA = <aaseq>MSYFTCKPNSGLIVDRPVAGLGRTGRLLSHPQYSLTTHSVRFPK                    LQKQVYPRLVLVAASQKKLPPLCASSGKVNPEAENDPFMESLKKAMDDAKKPRPIQDL                    LKEQIAKLREQGSGGGGGNRNRRGGSGDSGGPEDESFKESLDELVQVILATVAFILVY                    IHIIRGEELYRLARDYTRYLVTGKRTARLKRAMQKWRNFSESFMQSEGSQEDQYERAA                    TSKPTWWQQPQKFVHLMEELCRGNWRPHAQES</aaseq>|
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==Labs working on this gene==
DNA = <dnaseqindica>1461..1700#2348..2584#2973..3248#acaatgcatctcgattcttatcccttccgtcctccttcctcctcccccctccccggttcgacgcgcacatcgaaccccgacgaccaccaccgcccggccgccgccgccgccgacgcggtcgtcctctccggtaatccctgttaccctcctcgtattattcctcctcctcctcctcgccggtcaatctccgcgtcgtgtttcttctccgcgcgccacgatccttgccggcccccagccagctccgccgcgccggcggcggaggcggtccggcgtgctgccccggaatccctttacataccggaaactcctctcctcgcccacccccacactgcccagcccgattcctaactccggacggtggtcgtcgtcgccgccgccgggaaggttcctggtttgtgcctctttgtgggtaggatgcgttcgctcgttttggaattgtggggatagttttggaattgtggggatagcgagaggagaagctagtttggtattccgattcgtcttctcctcgtcacccgccttcttggaaaccccgcctcgcccgtccaaccaccaaccccgcacccccgcctcgccgcctgccgtccaccgccatgaaccaccttacggaatacgtatccatcaccgttggtgttcgaggtaacctgcaccaattcaattcgttatttggcggtgctttcttggtggaggtagatgcttgccttgcgctgtggtttaccccctcagcttaagtttggttcttgagttggacttgcttgggaaaaaaaggtgtgattttccgtgtccggtgtccctctgtgtgaaatagcaagaaagacaggtgcattgtgccgtccattccaacatgttgaatgcatgtggtctggcattctgcttgtgatttgtggcatagttttggcaccaatgagttgatgggattatgtgattagtattgtagttttgtgtcctcatgtccagtaaccagagtttttctcatgacaacatttctattgtagagttctatttactcctataacagtcttattttcaataagacgtcacttattttatgtgatttccatattggatggttgggtacacaggttagttagtatttatgacttgcttgcaaatgtcacactggacaatctccttacctcattatatggaaggggatgtgtatgattagacagaagggttcaaattcatctgtttttttagaaagtctacattgcaatatttggtatatataagtagatattcatcgcttaatgctttatagagggagttggggagcccagcattcccttttttctattataaaattcactatgtttccactcgacacgattgaactatgttagtttctgtatcttccgatagattagcacttctctgtaattcatgagaagttcttatgctgcctgaaaaatttgcaggctaggatctggtgcatctaactattcaagaaatagaaaagcatgagctacttcacttgcaagccgaacagtgggcttattgtggataggcccgtcgctggtcttgggaggacaggcagattactatctcatcctcaatattccctaacgacacattctgttcgatttcccaagcttcaaaagcaggtgtacccgcgacttgttcttgttgctgctagccagaaaaagcttcctcctctatgtgcctcgagtggaaaggtgaacccagaggcagaaaatgatgtaagtctctggcatgtcctttttgtgcatgaatgtatgatggagcatggaacatatggtctgatttgataattgcaatttttgtagtatcaatttgctcaaccccttttctttttctttttttttcatatgtgctccatcttctcccaaaacaaacttctgcctatcaaactgttgtttccttctattttatatctcttgatacctgtattggttaaactctcaatctcttgtcatcttgtaagaccttaagtgaagtcaatgtagttgtggctcatatttacgtgagcataatctttttctgaatgtgacaattacttactccctccgttccaaaaaacctcaacctaggaggggatgggacggagggagtacttcattactggatctgagcatctgttggcccatcttatttatttgagacgtcctagtttgctattcatattgaaacagtactctagcatactgaaacaaaatacataagtttatatggagagatggttatgcatttccagtttattgcactacactttttttttgctagaaacatgcatttacaatttttacatagatttaatttctgttagcattgcacttgctttgcagaattatctgcttaacaatgcatgtatattgccttgttgcagccctttatggaatctttgaagaaggccatggatgatgccaaaaagccacggcctattcaagacttgctgaaagaacagatagctaagctgagagaacaaggatctggtggaggtggaggaaaccgaaatcgtcgtggaggcagtggtgattctggtggcccagaagatgaatcattcaaggaatcattggatgaactagtccaagttatcttagcaaccgttgcattcattcttgtggtaactaacgttacattcttgtttgtactctctttccgaatgttatttcttctgacactttcacttttaccccaatttgtagcatagtcctgctttccaagtatcttattatgattagcttaactattaacgacatactgtaatgtcgaaacaacttacctgtagatagctccatggtcaatgcactaaaagacttgctacatgcattgaaactgcatagaaactggagactgagagcaccatttcactgttaagagcaatattatctgggtattccataaaagtctcggtgtagtcacagaaaaagtcggtgtaatgtagcttcaaaataaacaacaggcactaaatatatattaagaaactaatttgtatttgtgtaatattgcagtacatccatataatcagaggtgaggagctgtatcgcctcgccagggactacaccagatatcttgttactggcaagcgtactgcgcggttgaaacgtgccatgcaaaaatggcgcaatttctcagagagctttatgcaaagtgaaggctcacaagaagaccagtatgaaagagcagccacctccaaaccaacttggtggcaacagcctcaaaagtttgttcatcttatggaggaactctgccgaggaaattggcgcccgcatgcgcaggagtcttagttcaggtgctcccttgttcctttttggccttctgaagcacatggatgtggcgatgagcagtactgttttcatggctggtgcaatgacctggaatctggatagcgttccttgcccggggcagtgatttgttcttctttgttcgttaatgcgtattttctacgttttgttaagcactaaccaagtgagtaacttcctggcaattttgtagttgatgagatcgcatatataagctagccggcgtctcatgtcatatgcggcaaattgtagattatgttgaagttgaaccggtgtagcttggtttcactgcattttggtttggtttccttagcgttggaatgtaatgggtcacccttgacaacgtggctccaaatgtataatcttcaatggaaaacgagtagtaagtaccgaagcgcttcttcgctgaacacaacatatgaattcttgtcgcgtgtcggactactaggcatc</dnaseqindica>|
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* The Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, 12 South Zhong-Guan Cun Street, Beijing 100081, China
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001053909.1 RefSeq:Os02g0606000]|
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}}
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==References==
[[Category:Genes]]
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<references>
[[Category:Japonica mRNA]]
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* <ref name="ref1">
[[Category:Oryza Sativa Japonica Group]]
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Jiang Q, Ma X, Gong X, Zhang J, Teng S, Xu J, Lin D, Dong Y. The rice OsDG2
[[Category:Japonica Genes]]
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encoding a glycine-rich protein is involved in the regulation of chloroplast
[[Category:Japonica Chromosome 2]]
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development during early seedling stage. Plant Cell Rep. 2014 May;33(5):733-44.
[[Category:Chromosome 2]]
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doi: 10.1007/s00299-013-1549-4. Epub 2014 Jan 16. PubMed PMID: 24430865.
 +
</ref>
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</references>
 +
 
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==Structured Information==
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    [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 2]]

Latest revision as of 05:49, 12 October 2016

The rice Os02g0606000 was reported as OsDG2 in 2013 [1] by researchers from China.

Annotated Information

Figure 1. Characterization of the osdg2 mutants.[1].

Function

  • OsDG2 gene encoded a novel chloroplast-targeted GRP in rice.
  • Disruption of the OsDG2 would lead to delayed greening phenotype and affected expression levels of genes associated with chloroplast development at early leaf stage of rice.

Phenotypic analysis

  • Leaves of the osdg2 mutant displaying a delayed greening phenotype were characterized with bright yellow until three-leaf stage, thereafter, the emerging leaves turned to green (Fig. 1A).
  • Likewise, the contents of Chl a, b, and Car for the 3rd leaves were significantly reduced in osdg2 mutant (Fig. 1B), but those for the 4th leaves reached a normal level as WT Jiahua 1 (Fig. 1D).
  • This result is in accordance with the leaf phenotype of osdg2 mutant.

Expression

  • RT-PCR analysis showed that the OsDG2 transcripts were highly expressed in leaves and undetectable in other tissues, showing the tissue-specific expression.

Subcellular localization

  • Subcellular localization results showed that OsDG2 was targeted in chloroplasts.

You can also add sub-section(s) at will.

Labs working on this gene

  • The Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, 12 South Zhong-Guan Cun Street, Beijing 100081, China

References

  1. 1.0 1.1 Jiang Q, Ma X, Gong X, Zhang J, Teng S, Xu J, Lin D, Dong Y. The rice OsDG2 encoding a glycine-rich protein is involved in the regulation of chloroplast development during early seedling stage. Plant Cell Rep. 2014 May;33(5):733-44. doi: 10.1007/s00299-013-1549-4. Epub 2014 Jan 16. PubMed PMID: 24430865.

Structured Information