Difference between revisions of "Os11g0701800"

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(Created page with "{{JaponicaGene| GeneName = Os11g0701800| Description = Chitinase (EC 3.2.1.14) III C10701-rice (EC 3.2.1.14) (Class III chitinase homologue (OsChib3H-a)H-)| Version = NM_00...")
 
 
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{{JaponicaGene|
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The rice '''''Os11g0701800''''' was reported as '''''RIXI''''' in 2014 <ref name="ref1" /> by researchers from China.  
GeneName = Os11g0701800|
 
Description = Chitinase (EC 3.2.1.14) III C10701-rice (EC 3.2.1.14) (Class III chitinase homologue (OsChib3H-a)H-)|
 
Version = NM_001075059.1 GI:115486766 GeneID:4351194|
 
Length = 1229 bp|
 
Definition = Oryza sativa Japonica Group Os11g0701800, complete gene.|
 
Source = Oryza sativa Japonica Group
 
  
  ORGANISM  Oryza sativa Japonica Group
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==Annotated Information==
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
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[[File:57-Os11g0701800.png|right|thumb|327px|'''Figure 6.''' ''Expression of RIXI, Cht-3 and PR-1 in rice seedlings after Magnaporthe grisea treatment by qRT-PCR.<ref name="ref1" />.'']]
            Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
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===Gene Symbol===
            clade; Ehrhartoideae; Oryzeae; Oryza.
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*'''''Os11g0701800''''' '''<=>''' '''''OsRIXI,xylanase inhibitor,RIXI'''''
|
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Chromosome = [[:category:Japonica Chromosome 11|Chromosome 11]]|
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===Function===
AP = Chromosome 11:30562436..30563664|
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* Rice xylanase inhibitor '''''RIXI''''' is a XIP-type inhibitor that belongs to the glycoside hydrolase family 18 (GH18), which includes plant class III chitinases (EC 3.2.1.14) known as PR-8 proteins.
CDS = 30562526..30563440|
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* The rice '''''RIXI''''' might be involved in environmental responses such as defense against phytopathogens.
GCID = <gbrowseImage1>
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name=NC_008404:30562436..30563664
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===Expression===
source=RiceChromosome11
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* KJ201, a strain of M. grisea, can infect leaf tissue of O. sativa cv. Nipponbare. The qRT-PCR and sqRT-PCR indicated that '''''RIXI''''' was up- regulated in rice seedlings infected by M. grisea KJ201
preset=GeneLocation
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* the increased '''''RIXI''''' expression was accompanied by significantly elevated expression of PR-1 and Cht-3 after pathogen infection (Fig. 4a, b). This suggested that xylanase inhibitors could be expressed in combination with other defensive proteins, and used to develop resistance to pathogens.
</gbrowseImage1>|
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GSID = <gbrowseImage2>
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You can also add sub-section(s) at will.
name=NC_008404:30562436..30563664
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source=RiceChromosome11
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==Labs working on this gene==
preset=GeneLocation
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* College of Life Science, Zhejiang University, Hangzhou 310058, China
</gbrowseImage2>|
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CDNA = <cdnaseq>atggtggcgctcggacgccgttcatggctggtcccgctggccatggtgctcgccgtctccagctgcctcgccggcccggcgatggccgccggaaagaccgggcagatgaccgtgttctggggccgtaacaagaacgagggaaccctcaaggagacctgcgacaccggcctctacaccaccgtcgtcatctccttctacagcgtgttcggccacggccgctactggggcgacctctccggccacgacctccgcgtcatcggcgccgacatcaagcactgccagtccaagaacatcttcgtcttcctctccatcggcggcgccggcaaggactactccctcccgacctccaagtccgccgccgacgtcgccgacaacatctggaacgcccacatggacggccgccgccccggcgtgttccgccccttcggcgacgccgccgtcgacggcatcgacttcttcatcgaccagggcgcgcccgaccactacgacgacctcgcccgcaacctctacgcctacaacaagatgtaccgcgcccggacgccggtgaggttgacggcgacggtgcgctgcgcgttcccggacccgaggatgaagaaggcgctggacaccaagctgttcgagcgcatccacgtccgcttctacgacgacgccacctgctcctacaaccacgcggggctcgccggcgtcatggcgcagtggaacaagtggacggcgaggtaccccggcagccacgtctacctgggcctcgcggcggcgaacgtgccggggaagaacgacaacgtgttcatcaagcagctctactacgatctgcttcccaatgtgcagaaggcgaagaactatggcggaatcatgctctgggacaggttctacgacaagcagaccggttacggcaaaaccgtcaagtactgggcttaa</cdnaseq>|
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==References==
AA = <aaseq>MVALGRRSWLVPLAMVLAVSSCLAGPAMAAGKTGQMTVFWGRNK                    NEGTLKETCDTGLYTTVVISFYSVFGHGRYWGDLSGHDLRVIGADIKHCQSKNIFVFL                    SIGGAGKDYSLPTSKSAADVADNIWNAHMDGRRPGVFRPFGDAAVDGIDFFIDQGAPD                    HYDDLARNLYAYNKMYRARTPVRLTATVRCAFPDPRMKKALDTKLFERIHVRFYDDAT                    CSYNHAGLAGVMAQWNKWTARYPGSHVYLGLAAANVPGKNDNVFIKQLYYDLLPNVQK                    AKNYGGIMLWDRFYDKQTGYGKTVKYWA</aaseq>|
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<references>
DNA = <dnaseqindica>91..1005#caatcttacatcaactacctacttcctacgtagcccagtaactatacattattaaggctaaccagtaactaactaaggcacacgtacgcaatggtggcgctcggacgccgttcatggctggtcccgctggccatggtgctcgccgtctccagctgcctcgccggcccggcgatggccgccggaaagaccgggcagatgaccgtgttctggggccgtaacaagaacgagggaaccctcaaggagacctgcgacaccggcctctacaccaccgtcgtcatctccttctacagcgtgttcggccacggccgctactggggcgacctctccggccacgacctccgcgtcatcggcgccgacatcaagcactgccagtccaagaacatcttcgtcttcctctccatcggcggcgccggcaaggactactccctcccgacctccaagtccgccgccgacgtcgccgacaacatctggaacgcccacatggacggccgccgccccggcgtgttccgccccttcggcgacgccgccgtcgacggcatcgacttcttcatcgaccagggcgcgcccgaccactacgacgacctcgcccgcaacctctacgcctacaacaagatgtaccgcgcccggacgccggtgaggttgacggcgacggtgcgctgcgcgttcccggacccgaggatgaagaaggcgctggacaccaagctgttcgagcgcatccacgtccgcttctacgacgacgccacctgctcctacaaccacgcggggctcgccggcgtcatggcgcagtggaacaagtggacggcgaggtaccccggcagccacgtctacctgggcctcgcggcggcgaacgtgccggggaagaacgacaacgtgttcatcaagcagctctactacgatctgcttcccaatgtgcagaaggcgaagaactatggcggaatcatgctctgggacaggttctacgacaagcagaccggttacggcaaaaccgtcaagtactgggcttaattaattaacctactactactatttactgctactatgcgttaatttgtgcgtgtgtgtttgagaataaaatatgttggtgtgtgttggtttttttatgtaggtatatgaataaaacgagatccatatgtaacgatggagatctcgagttgtttgtttgttggtcatcaatcgaataaagtgtatgaacaatatatcagaaatggttattatgtaattttgtctct</dnaseqindica>|
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* <ref name="ref1">
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001075059.1 RefSeq:Os11g0701800]|
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Hou, Chun-Xiao, et al. "Functional characterization of a new pathogen induced xylanase inhibitor (RIXI) from rice." European journal of plant pathology 138.2 (2014): 405-414.
}}
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</ref>
[[Category:Genes]]
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[[Category:Japonica mRNA]]
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</references>
[[Category:Oryza Sativa Japonica Group]]
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[[Category:Japonica Genes]]
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==Structured Information==
[[Category:Japonica Chromosome 11]]
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[[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 11]]
[[Category:Chromosome 11]]
 

Latest revision as of 08:07, 12 October 2016

The rice Os11g0701800 was reported as RIXI in 2014 [1] by researchers from China.

Annotated Information

Figure 6. Expression of RIXI, Cht-3 and PR-1 in rice seedlings after Magnaporthe grisea treatment by qRT-PCR.[1].

Gene Symbol

  • Os11g0701800 <=> OsRIXI,xylanase inhibitor,RIXI

Function

  • Rice xylanase inhibitor RIXI is a XIP-type inhibitor that belongs to the glycoside hydrolase family 18 (GH18), which includes plant class III chitinases (EC 3.2.1.14) known as PR-8 proteins.
  • The rice RIXI might be involved in environmental responses such as defense against phytopathogens.

Expression

  • KJ201, a strain of M. grisea, can infect leaf tissue of O. sativa cv. Nipponbare. The qRT-PCR and sqRT-PCR indicated that RIXI was up- regulated in rice seedlings infected by M. grisea KJ201
  • the increased RIXI expression was accompanied by significantly elevated expression of PR-1 and Cht-3 after pathogen infection (Fig. 4a, b). This suggested that xylanase inhibitors could be expressed in combination with other defensive proteins, and used to develop resistance to pathogens.

You can also add sub-section(s) at will.

Labs working on this gene

  • College of Life Science, Zhejiang University, Hangzhou 310058, China

References

  1. 1.0 1.1 Hou, Chun-Xiao, et al. "Functional characterization of a new pathogen induced xylanase inhibitor (RIXI) from rice." European journal of plant pathology 138.2 (2014): 405-414.

Structured Information