Difference between revisions of "Os02g0256200"

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(Created page with "{{JaponicaGene| GeneName = Os02g0256200| Description = Conserved hypothetical protein| Version = NM_001053004.1 GI:115445378 GeneID:4328921| Length = 1302 bp| Definition ...")
 
(References)
 
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{{JaponicaGene|
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The rice '''Os02g0256200''' was reported as '''OsHARP''' in 2009 <ref name="ref1" /> by researchers from the Japan.
GeneName = Os02g0256200|
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==Annotated Information==
Description = Conserved hypothetical protein|
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[[File:34.png |right |thumb |345px |''''''Fig. 2 Co-immunoprecipitation assay showing in vivo interactions
Version = NM_001053004.1 GI:115445378 GeneID:4328921|
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between OsCRT and OsCRT interacting protein, OsHARP. '''''']]
Length = 1302 bp|
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===Gene Symbol===
Definition = Oryza sativa Japonica Group Os02g0256200, complete gene.|
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*'''Os02g0256200 <=> OsHARP'''
Source = Oryza sativa Japonica Group
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<br>
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===Function===
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*HARP in rice leaf sheath cell division or elongation and suggest that CRT may interact with HARP during certain stages of development.
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<br>
  
  ORGANISM  Oryza sativa Japonica Group
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===Expression===
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
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*The mRNA expression level of OsHARP was up-regulated in rice seedlings treated with gibberellin (GA), but not ABA and showed a similar pattern as OsCRT mRNA.
            Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
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*Rice plants transformed with the OsHARP promoter-GUS construct showed GUS staining in the basal parts of leaf sheaths, and although GUS activity increased when treated with GA3, it was not as high an increase as when mRNA was analyzed.
            clade; Ehrhartoideae; Oryzeae; Oryza.
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<br>
|
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Chromosome = [[:category:Japonica Chromosome 2|Chromosome 2]]|
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==Labs working on this gene==
AP = Chromosome 2:8871946..8873247|
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*National Institute of Crop Science, 2-1-18 Kannondai,Tsukuba 305-8518, Japan
CDS = 8872186..8873214|
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<br>
GCID = <gbrowseImage1>
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name=NC_008395:8871946..8873247
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==References==
source=RiceChromosome02
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<references>
preset=GeneLocation
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<ref name="ref1">
</gbrowseImage1>|
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Characterization of a histidine- and alanine-rich protein showing interaction with calreticulin in rice
GSID = <gbrowseImage2>
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</ref>
name=NC_008395:8871946..8873247
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source=RiceChromosome02
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</references>
preset=GeneLocation
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<br>
</gbrowseImage2>|
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CDNA = <cdnaseq>atggcccgcctcgccgtcgccgccgcactcctcctcgtcgccctctgccgcgtcgtccacggcgaggccgatcaggagaccgcccccgcctacgccaaccgtgaagcctacgtcgagcacaatggtggtgacgccgccggcacgtccgtcgccatcgtcccgccctacctcgacgccgccgccgccgcccgtgacgagcccgcggcggcggcggcgagccccgaggggcctgtgatcccggtcgacgacgacgcggcggaccagcagggcttcctccgcttcccctgccgctaccactgccgctaccgccaccacatgcgccacggcggccatcgccatggggagggattccatggcaaggaggagaagcagcagctggtgttcgagatgccagtcgagccggcgacccgcggcgaggagcgcagggaggaggaggagggggtggttctccccgtcgcggagccagatccggactcgcgccgccagtatgccgccgtagccgccgccgaggaggaagacgaggatgagatggcgaggctccaccacggccgccgctcccaccaccaccatcatcgccaccaccatcatcaccacgacgagaacgaggaggacgagcacgagcaggccgacgaggcttcgcccgccgtggagcggttgatcagcttccaccgccgccgccaccaccaccaccaccacgaagacgaccacgagcagcgcgaggagggtgcgcccatgaagcggttccgccaccaccacgaggaggaggaggagtccgagatgaggaccaagcgcttccaccaccaccaccacaaggacgacgacgagcgcgagctggaggagatggcgaggcggtggatcaggaaggcgctgatgagcagcaggatgcaccaccaccgcggctgccgcttccaccaccaccaccaccacctcagcttccgccaccgcgcggaggacgccgccgccgccggcgaggaggaggagaaaggcggggtgatgagttggctcaaggactttgtgaaccgcttctag</cdnaseq>|
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==Structured Information==
AA = <aaseq>MARLAVAAALLLVALCRVVHGEADQETAPAYANREAYVEHNGGD                    AAGTSVAIVPPYLDAAAAARDEPAAAAASPEGPVIPVDDDAADQQGFLRFPCRYHCRY                    RHHMRHGGHRHGEGFHGKEEKQQLVFEMPVEPATRGEERREEEEGVVLPVAEPDPDSR                    RQYAAVAAAEEEDEDEMARLHHGRRSHHHHHRHHHHHHDENEEDEHEQADEASPAVER                    LISFHRRRHHHHHHEDDHEQREEGAPMKRFRHHHEEEEESEMRTKRFHHHHHKDDDER                    ELEEMARRWIRKALMSSRMHHHRGCRFHHHHHHLSFRHRAEDAAAAGEEEEKGGVMSW                    LKDFVNRF</aaseq>|
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    [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 2]]
DNA = <dnaseqindica>34..1062#gtcggtcaacgccgcgctcgatctctcgccgccatggcccgcctcgccgtcgccgccgcactcctcctcgtcgccctctgccgcgtcgtccacggcgaggccgatcaggagaccgcccccgcctacgccaaccgtgaagcctacgtcgagcacaatggtggtgacgccgccggcacgtccgtcgccatcgtcccgccctacctcgacgccgccgccgccgcccgtgacgagcccgcggcggcggcggcgagccccgaggggcctgtgatcccggtcgacgacgacgcggcggaccagcagggcttcctccgcttcccctgccgctaccactgccgctaccgccaccacatgcgccacggcggccatcgccatggggagggattccatggcaaggaggagaagcagcagctggtgttcgagatgccagtcgagccggcgacccgcggcgaggagcgcagggaggaggaggagggggtggttctccccgtcgcggagccagatccggactcgcgccgccagtatgccgccgtagccgccgccgaggaggaagacgaggatgagatggcgaggctccaccacggccgccgctcccaccaccaccatcatcgccaccaccatcatcaccacgacgagaacgaggaggacgagcacgagcaggccgacgaggcttcgcccgccgtggagcggttgatcagcttccaccgccgccgccaccaccaccaccaccacgaagacgaccacgagcagcgcgaggagggtgcgcccatgaagcggttccgccaccaccacgaggaggaggaggagtccgagatgaggaccaagcgcttccaccaccaccaccacaaggacgacgacgagcgcgagctggaggagatggcgaggcggtggatcaggaaggcgctgatgagcagcaggatgcaccaccaccgcggctgccgcttccaccaccaccaccaccacctcagcttccgccaccgcgcggaggacgccgccgccgccggcgaggaggaggagaaaggcggggtgatgagttggctcaaggactttgtgaaccgcttctaggtctctcgatcgatcagcctagcttgccgctgcttcttcttctccatcgtctgcttgtgttgttgtgtcgagttcattcatgattcatatggctgctgtgtattctacttttctacggccgtatatgtatttcgtataccgtatttgtgttgtggtactctcgacttatcccgagtgttcatgttgttgtttgtgtcacggatgttaataaattgttctcctatttcaaatgcgtgcatt</dnaseqindica>|
 
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001053004.1 RefSeq:Os02g0256200]|
 
}}
 
[[Category:Genes]]
 
[[Category:Japonica mRNA]]
 
[[Category:Oryza Sativa Japonica Group]]
 
[[Category:Japonica Genes]]
 
[[Category:Japonica Chromosome 2]]
 
[[Category:Chromosome 2]]
 

Latest revision as of 07:57, 15 October 2016

The rice Os02g0256200 was reported as OsHARP in 2009 [1] by researchers from the Japan.

Annotated Information

'Fig. 2 Co-immunoprecipitation assay showing in vivo interactions between OsCRT and OsCRT interacting protein, OsHARP. '

Gene Symbol

  • Os02g0256200 <=> OsHARP


Function

  • HARP in rice leaf sheath cell division or elongation and suggest that CRT may interact with HARP during certain stages of development.


Expression

  • The mRNA expression level of OsHARP was up-regulated in rice seedlings treated with gibberellin (GA), but not ABA and showed a similar pattern as OsCRT mRNA.
  • Rice plants transformed with the OsHARP promoter-GUS construct showed GUS staining in the basal parts of leaf sheaths, and although GUS activity increased when treated with GA3, it was not as high an increase as when mRNA was analyzed.


Labs working on this gene

  • National Institute of Crop Science, 2-1-18 Kannondai,Tsukuba 305-8518, Japan


References

  1. Characterization of a histidine- and alanine-rich protein showing interaction with calreticulin in rice


Structured Information