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| − | {{JaponicaGene|
| + | The rice '''Os02g0523500''' was reported as '''OsTudor-SN''' in 2008 <ref name="ref1" /> by researchers from the Japan. |
| − | GeneName = Os02g0523500|
| + | <br> |
| − | Description = Similar to 110 kDa 4SNc-Tudor domain protein (Fragment)|
| + | ==Annotated Information== |
| − | Version = NM_001053520.1 GI:115446410 GeneID:4329508|
| + | [[File:36.png |right |thumb |345px |''''''Figure 1. OsTudor-SN occurs as higher molecular weight complexes, and cosediments with polysomes.'''''']] |
| − | Length = 6591 bp|
| + | ===Gene Symbol=== |
| − | Definition = Oryza sativa Japonica Group Os02g0523500, complete gene.|
| + | *'''Os02g0523500 <=> OsTudor-SN''' |
| − | Source = Oryza sativa Japonica Group
| + | <br> |
| | + | ===Function=== |
| | + | *OsTudor-SN is a component of the RNA transport particle, and may control storage protein biosynthesis by regulating one or more processes leading to the transport, localization and anchoring of their RNAs to the cortical ER. |
| | + | <br> |
| | | | |
| − | ORGANISM Oryza sativa Japonica Group
| + | ===Expression=== |
| − | Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
| + | *Examination of OsTudor-SN particles in transgenic rice plants expressing GFPtagged prolamine RNA transport particles showed co-localization of OsTudor-SN and GFP, suggesting a role in RNA transport. |
| − | Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
| + | <br> |
| − | clade; Ehrhartoideae; Oryzeae; Oryza.
| + | |
| − | |
| + | ===Mutant=== |
| − | Chromosome = [[:category:Japonica Chromosome 2|Chromosome 2]]|
| + | *Downregulation of OsTudor-SN by antisense and RNAi resulted in a decrease in steady state prolamine RNA and protein levels, and a reduction in the number of prolamine protein bodies. |
| − | AP = Chromosome 2:19956733..19963323|
| + | <br> |
| − | CDS = 19957100..19957288,19957486..19957863,19958619..19958813,19958893..19958970,19959035..19959220<br>,19959296..19959526,19959605..19959958,19960056..19960253,19960337..19960507<br>,19960624..19960731,19960830..19961048,19961133..19961339,19961446..19961664<br>,19961783..19961857,19962217..19962369|
| + | |
| − | GCID = <gbrowseImage1>
| + | ==Labs working on this gene== |
| − | name=NC_008395:19956733..19963323
| + | *Department of Applied Bioscience, Graduate School of Agriculture, Hokkaido University, Kita-9, Nishi-9, Kita-ku, Sapporo 060-8589, Japan. |
| − | source=RiceChromosome02
| + | *Laboratory of Crop Science, Graduate School of Agriculture, Kyoto University, Kitashirakawa, Kyoto 606-8502, Japan. |
| − | preset=GeneLocation
| + | *Department of Biological Sciences, Myongji University, Namdong, Yongin, Kyonggido 449-728, South Korea. |
| − | </gbrowseImage1>| | + | *Department of Agricultural Biotechnology, Assam Agricultural University, Jorhat 785 013, Assam, India. |
| − | GSID = <gbrowseImage2>
| + | <br> |
| − | name=NC_008395:19956733..19963323
| + | ==References== |
| − | source=RiceChromosome02
| + | <references> |
| − | preset=GeneLocation
| + | <ref name="ref1"> |
| − | </gbrowseImage2>| | + | The cytoplasmic-localized, cytoskeletal-associated RNA binding protein OsTudor-SN: evidence for an essential role in storage protein RNA transport and localization |
| − | CDNA = <cdnaseq>atggcgtcagccactggagcgtctggatggctgaggggtaaggtgaagggtgtgacttctggggactgtcttctcatcatggggagcaccaaggcggatgtcccgccgcctgagaagtcgattactctgtcatacctcatggccccaaggctggctcgccgtggtggagtggatgaaccatttgcttgggaaagcagggagtttctaaggaaactctgcataggaaaggaggtcacattcagagtggactacacagctccaaatgttggacgagaatttggtactgtttacctcggtgacaagaatgttgcctactcgataattgctgcaggatgggcaagggtaaaggagcaaggcccaaagggcggtgaaccgagtccatatcttactgagctgctaaggttggaggaagttgctaagcagcagggtttaggtcgttggagcaaggaacctggtgctgctgaagaatcaataagagatcttccaccatcagcaattggtgaagctagtggttttgatgcaaagggttttgcagttgcgaataaaggcaagagtctggaagccattgttgaacaagttcgtgatggcagtacagttcgtgtttacttgctcccaagtttccaatttgttcagatatatgttgctggagttcagtctccatccatggggaggcgcccaccgaatcctacagtggtggctgcagcagagagtactgctgatggcgctacaaacggtggagattctgaggaagctccagcaccactgactacagcccaaaggcttgccgcagcagcggtttctactgaaattccaccggacaggtttggaatagaagctaagcacttcacagagacacgggttctcaatagagatgtgcgaattgtggtggaaggcacagatagtttcagcaatataattggctcagtgtattactctgatggggatacattgaaggatctggcccttgagcttgttgaaaatggtcttgccaagtatgttgagtggagtgccaacatgatggacgttgatgcaaaaataaagctgaagaatgctgagcttcaggctaagaaggaccagttgagaatttggacaggatttaagccaccagtgacaaactcgaagccaatccacgaccagaaattcactggaaaagttgtagaggttgtgagtggggattgcatcattgttgctgatgacgcagctccttacggaagtccttctgcagaacgccgggttaatctttcaagcattagagctcctaaaatgggcaaccctcgtagagatgagaagcctgataattttgctcgtgaagccaaggaattcttgcgcacaaggttgattggcaagcaagtgactgttgagatggaatactctagaaggatcagcactgtggatggacagcccacaacaaacacagctgatgccagggttttggattatgggtcggtttttcttggttcaccttcgcaggctgatggtgatgatgtttcttccattccaagctcaggcaaccaacctggtatcaatattgctgagactctgctctcaaggggctttgctagaacatctaaacatcgggactacgaagaaaggtcacactattttgacctgctgttggcggctgaatcacgagctgagaaagcaaagaaaggagttcattctgcaaaagaatcacctgtcatgcacataacagacttgacaacggtttcagcaaagaaggccagagacttccttcctttcttacagcggaacagaagacattccgcaattgttgaatatgtcttcagtggccaccgtttcaaactaacaattcctaaggagacttgcagcattgccttctctttctctggtgttagatgccctggtaaagatgagccctactcgaacgaagctattgctttgatgaggaggagaattctacagcgagatgtggagatagaggttgaagcagttgatagaactgggacattcttaggttccttatgggagtccaaaaccaacatggcttctgttcttctggaggctggtctggccaagcttagttcatttggcttggataggattccggatgcaaatgttctaatgagggctgaacagtctgcaaagcagcagaaactcaagatctgggagaattatgtagagggtgaagaagtttccaatggatctgcatctgaatccaaacaaaaggaaattctcaaggttgttgtaactgaagtccttggtggtggaaagttctatgtccaaacagttggtgaccatagagtggcttccattcaacaacagcttgcatctttaaaacttaaagatgcacctgttattggtgcttttaatcctgtgaagggggaaatagttcttgctcagtttagtgctgacaactcctggaatagagcaatgattgtgaatggacctcgaggagctgtatcatctcaagacgacaagtttgaagtattctacattgactatggcaaccaagaagtcgttccttacagtcgcatacggcctgctgacccatcaatttcctcttcgcctgctcttgctcagttgtgcagccttgccttcataaaagtgcccaacctagaagatgattttggccatgaagcagcagtctatctgaatgattgcttgctcaacagccaaaaacaatacagggcaatgattgaagagcgtgatacttctggtggaaagtccaagggacaaggcactggaactattctgattgttacactggttgacgcagagacagaaaccagcatcaatgctaccatgcttgaggaagggcttgctcggcttgaaagaagcaagagatgggatactagggagagaaaggctgctctccagaatctggaacagttccaggagaaagcaaagaaggaaaggctgcagatctggcagtatggtgatgttgaatctgacgaggaagagcaagctccagcggctaggagaactggagggcgtcggtag</cdnaseq>|
| + | </ref> |
| − | AA = <aaseq>MASATGASGWLRGKVKGVTSGDCLLIMGSTKADVPPPEKSITLS YLMAPRLARRGGVDEPFAWESREFLRKLCIGKEVTFRVDYTAPNVGREFGTVYLGDKN VAYSIIAAGWARVKEQGPKGGEPSPYLTELLRLEEVAKQQGLGRWSKEPGAAEESIRD LPPSAIGEASGFDAKGFAVANKGKSLEAIVEQVRDGSTVRVYLLPSFQFVQIYVAGVQ SPSMGRRPPNPTVVAAAESTADGATNGGDSEEAPAPLTTAQRLAAAAVSTEIPPDRFG IEAKHFTETRVLNRDVRIVVEGTDSFSNIIGSVYYSDGDTLKDLALELVENGLAKYVE WSANMMDVDAKIKLKNAELQAKKDQLRIWTGFKPPVTNSKPIHDQKFTGKVVEVVSGD CIIVADDAAPYGSPSAERRVNLSSIRAPKMGNPRRDEKPDNFAREAKEFLRTRLIGKQ VTVEMEYSRRISTVDGQPTTNTADARVLDYGSVFLGSPSQADGDDVSSIPSSGNQPGI NIAETLLSRGFARTSKHRDYEERSHYFDLLLAAESRAEKAKKGVHSAKESPVMHITDL TTVSAKKARDFLPFLQRNRRHSAIVEYVFSGHRFKLTIPKETCSIAFSFSGVRCPGKD EPYSNEAIALMRRRILQRDVEIEVEAVDRTGTFLGSLWESKTNMASVLLEAGLAKLSS FGLDRIPDANVLMRAEQSAKQQKLKIWENYVEGEEVSNGSASESKQKEILKVVVTEVL GGGKFYVQTVGDHRVASIQQQLASLKLKDAPVIGAFNPVKGEIVLAQFSADNSWNRAM IVNGPRGAVSSQDDKFEVFYIDYGNQEVVPYSRIRPADPSISSSPALAQLCSLAFIKV PNLEDDFGHEAAVYLNDCLLNSQKQYRAMIEERDTSGGKSKGQGTGTILIVTLVDAET ETSINATMLEEGLARLERSKRWDTRERKAALQNLEQFQEKAKKERLQIWQYGDVESDE EEQAPAARRTGGRR</aaseq>|
| + | </references> |
| − | DNA = <dnaseqindica>6036..6224#5461..5838#4511..4705#4354..4431#4104..4289#3798..4028#3366..3719#3071..3268#2817..2987#2593..2700#2276..2494#1985..2191#1660..1878#1467..1541#955..1107#ccgttccgcgcatcgctacaccccaaaaacctctcacgcgctctctcccctcgcctcgccgcgccgctgcgtcgtcggcgacgggatcgtgggctcgtggagagggcaccgccgccgccgtcgccgccggacggatctagccgtctacaccccgctccccgccctctctctcgaggcgatcgcgccgagctgagctgaggtgaggtgagccgctcccccctgatccgatgcctccgtctccatctcgtgcgttgttgggtgtgccggggctcagatctggcggtctggggtcccgccgccgcccgatctgtgggtcgcgggtgtcgattcgggcgggcggcggcggcggcggctctactctgctccgccgttttgctcggggggtctggttccggacgccgggaatttcacgagatcgcgtgggtttctggatgggctaggcgtcagatctgcgcgtgctgctaccgttgcagctttttttttcttcttcttcgtggcgtatccgtgagatttgcatctgtacgtgcttgcgcattgcgggtggtttactctgccgtgcactgggggccatcgctgcagaaaggtggccggggtttgagcttttgacccctggagtggttggaatcttgcagttatttggggtggggtgtgggccaaatctttcgggggcaattttccccaagtttccttttagagaaacatgctcgtttctagccataccagtgtaggataagagcgtgatacgtgctgaccacttacgttcctcctgaatgaatatctgattgatgatagttagctgcttcttgtttagggtggggggtatctatcgtaattcattttcagataggagaaaatttgtgggttggtacgataggttagcccaggcatactaaatttggctttggctaagctggttctatcctttcgtttgatcgcagggtgtagcttactatcatggcgtcagccactggagcgtctggatggctgaggggtaaggtgaagggtgtgacttctggggactgtcttctcatcatggggagcaccaaggcggatgtcccgccgcctgagaagtcgattactctgtcatacctcatggccccaaggctggtaagatttatatggacttgatgtagtcagacaatataacacattttctaggttcatttgtctcatgaatttgtggaagtgtttggtctgttccaaagtggacgacttttgtgtaacccctaaaactaatggaaatactccatccttccttttttatatgaccaatgtcaaacaaataaaaccagaggcagtataatagtgacaatcggactctttccaccaccgcatgcattaatattcctacgctatggttttatattttctcgtgtagttcaaaacttatgaatttattcttattctccagtctttccctccctttttgctttatgtattgaaactaaaactttgtgctgctcaaggctcgccgtggtggagtggatgaaccatttgcttgggaaagcagggagtttctaaggaaactctgcataggaaaggtactccatgtgaattttagatcttctttgaatttacttaaatgcatagatatcgattgtgtttgtagaaaacatgccagtttccctgttaccaatgaaaaattcaaacatgttacaggaggtcacattcagagtggactacacagctccaaatgttggacgagaatttggtactgtttacctcggtgacaagaatgttgcctactcgataattgctgcaggatgggcaagggtaaaggagcaaggcccaaagggcggtgaaccgagtccatatcttactgagctgctaaggttggaggaagttgctaagcagcagggtttaggtcgttggagcaaggttagcaaatctttttgtttctgccccctccccctttttctttgtactgcaagagatgaatgctttattgtttgcttttttatgcatgttctttttaaactttcaggaacctggtgctgctgaagaatcaataagagatcttccaccatcagcaattggtgaagctagtggttttgatgcaaagggttttgcagttgcgaataaaggcaagagtctggaagccattgttgaacaagttcgtgatggcagtacagttcgtgtttacttgctcccaagtttccaatttgttcagatatatgttgctggagttcaggtatgcttgtcatggacccttttgtctactattgtttcttttttcatgtttagaaaggtgaatgttgattagacaaaaatgtagtctccatccatggggaggcgcccaccgaatcctacagtggtggctgcagcagagagtactgctgatggcgctacaaacggtggagattctgaggaagctccagcaccactgactacagcccaaaggcttgccgcagcagcggtttctactgaaattccaccggacaggtttggaatagaagctaagcacttcacagagacacgggttctcaatagagatgtaagacatatcatgattcaaagtttttaatcctctttgcaaacaataattactatatttcataagttccttctgttctcttttgaactttcctctaggtgcgaattgtggtggaaggcacagatagtttcagcaatataattggctcagtgtattactctgatggggatacattgaaggatctggcccttgagcttgttgaaaatgtacgatcaattatttatccactacctttcatttgactcacatgattctttttaagatttattttaataatgagatctgcttgcattgaaattcttttgtatgattaattatgcagggtcttgccaagtatgttgagtggagtgccaacatgatggacgttgatgcaaaaataaagctgaagaatgctgagcttcaggctaagaaggaccagttgagaatttggacaggatttaagccaccagtgacaaactcgaagccaatccacgaccagaaattcactggaaaagtgggttccctgttctcacaagtagtgtattcaacatgatcatgcgattgaagctaatttgctttgtgttgatcctttcataggttgtagaggttgtgagtggggattgcatcattgttgctgatgacgcagctccttacggaagtccttctgcagaacgccgggttaatctttcaagcattagagctcctaaaatgggcaaccctcgtagagatgagaagcctgataattttgctcgtgaagccaaggaattcttgcgcacaaggttgattggcaagcaagtatgtacataggttttgagatattccatcagaagttccataacaagttgttacctttgttgaaaatttattgattttttctccttcctatttccaggtgactgttgagatggaatactctagaaggatcagcactgtggatggacagcccacaacaaacacagctgatgccagggttttggattatgggtcggtttttcttggttcaccttcgcaggctgatggtgatgatgtttcttccattccaagctcaggcaaccaacctggtatcaatattgctgagactctgctctcaaggggctttgctagaacatctaaacatcgggactacgaagaaaggtcacactattttgacctgctgttggcggctgaatcacgagctgagaaagcaaagaaaggagttcattctgcaaaagaatcacctgtcatgcacataacagacttgacaacggtttggcactcttgcttgttcttttacttttacttttcctttggcacctttattaactcgtagttcctatgcgctcaggtttcagcaaagaaggccagagacttccttcctttcttacagcggaacagaagacattccgcaattgttgaatatgtcttcagtggccaccgtttcaaactaacaattcctaaggagacttgcagcattgccttctctttctctggtgttagatgccctggtaaagatgagccctactcgaacgaagctattgctttgatgaggaggagaattctacagcgagatgtggaggtatgactcttgtgcatctttggttaatccacctccatggcttcgatgtctaaataataccatgtgattctacagatagaggttgaagcagttgatagaactgggacattcttaggttccttatgggagtccaaaaccaacatggcttctgttcttctggaggctggtctggccaagcttagttcatttggcttggataggattccggatgcaaatgttctaatgagggctgaacagtctgcaaagcagcagaaactcaaggtaaccacttctattcttgaactacacaaggagaaaacatgctgacatccttttctttttcaagatctgggagaattatgtagagggtgaagaagtttccaatggatctgcatctgaatccaaacaaaaggaaattctcaaggtttgttgatcaagaatatattggaatgtacagacttgccattttgtaaacaaactgttaacctggtttccatattcaggttgttgtaactgaagtccttggtggtggaaagttctatgtccaaacagttggtgaccatagagtggcttccattcaacaacagcttgcatctttaaaacttaaagatgcacctgttattggtgcttttaatcctgtgaagggggaaatagttcttgctcagtttagtgctgacaactcctggaatagagcaatggtacgtttcacttctatcctgatcttgaaagttgcctgtatgtctcacttctatgttgcaagtcaaaactaattatgtgttggggtcatggtttaggtttatgctaacctaagcagcttactagaacttcacaaaatttcttttggtatttacatttttccttgcaaagggggtttaatggcattaattgtgttgtgactttagaatgataatatgctatctttgcaaatcaattgttcccttggttagctgttctgtatagtcaagtaaaaatttctacaagtggtgggtcataccaattgagtaattgcttattttcataaatgtttgggccacttgagttaatttggacccaggaaatgggtgatattgttagaatccattgtaattcatttgacttgctcaaacttgtgttcctgctaaaatgaaggattggataaaagggacttagatgatatattctttagttgaatatttaagggacttggggcattagtgttttatgccaatgttgtttttacctcatagcttcgctaatgttctgctgttgattgcctaaacagctagtgatttcatcctgttgttttaattacatgatccatcatccatgggatcatctctaggaaattgcacaaactcatgttttattcttatgaaccattttagtcctggacttgttaagttgaacattcccgtttctagtttctggttttcaaaaataattaggaagtatatccattttaactgatctgcagattgtgaatggacctcgaggagctgtatcatctcaagacgacaagtttgaagtattctacattgactatggcaaccaagaagtcgttccttacagtcgcatacggcctgctgacccatcaatttcctcttcgcctgctcttgctcagttgtgcagccttgccttcataaaagtgcccaacctagaagatgattttggccatgaagcagcagtctatctgaatgattgcttgctcaacagccaaaaacaatacagggcaatgattgaagagcgtgatacttctggtggaaagtccaagggacaaggcactggaactattctgattgttacactggttgacgcagagacagaaaccagcatcaatgctaccatgcttgaggttcgtgctacttgctacttaacattatgaattgtggtgatcttaaattagttgtcggttagcttctgcatagtctgctgtcacatatgaatgctactcaacattgcttctgtttgagattgaaggctgcttgcaaactagtcacagagatatgtgaaattgtcttcgttgctaatattcccattctgtttatgcaggaagggcttgctcggcttgaaagaagcaagagatgggatactagggagagaaaggctgctctccagaatctggaacagttccaggagaaagcaaagaaggaaaggctgcagatctggcagtatggtgatgttgaatctgacgaggaagagcaagctccagcggctaggagaactggagggcgtcggtagatgagagaaggctgctcaagacagcaatggcgtcggtaagctatcatcaagttttggacaccgggtcagactctaccgggagctttagatgaaaaacatagagaaagaaaatgaggattaccttatttatgcagttagaacagaacttagcgaggcgaaacttccttagtttgagcactgttgcttgatgctgaactattattccgttttacaccgtaatgttgaggttaagatacattgtttttcccctaaacttaataatgtcgtgtacttggtgcactgcagttctttgtagacacaacataataccgagagcgcagtcaattaaaattcaggattgaacttaaagaggtatcccaagattgcc</dnaseqindica>|
| + | <br> |
| − | Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001053520.1 RefSeq:Os02g0523500]|
| + | ==Structured Information== |
| − | }}
| + | [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 2]] |
| − | [[Category:Genes]] | |
| − | [[Category:Japonica mRNA]]
| |
| − | [[Category:Oryza Sativa Japonica Group]] | |
| − | [[Category:Japonica Genes]]
| |
| − | [[Category:Japonica Chromosome 2]] | |
| − | [[Category:Chromosome 2]]
| |
