|
|
| (4 intermediate revisions by 3 users not shown) |
| Line 1: |
Line 1: |
| − | {{JaponicaGene|
| + | The rice '''Os02g0625000''' was reported as '''Oscry2''' in 2006 <ref name="ref1" /> by researchers from the Japan. |
| − | GeneName = Os02g0625000|
| + | <br> |
| − | Description = Similar to Deoxyribodipyrimidine photo-lyase (EC 4.1.99.3) (DNA photolyase) (Photoreactivating enzyme)|
| |
| − | Version = NM_001186153.1 GI:297721438 GeneID:9270575|
| |
| − | Length = 5700 bp|
| |
| − | Definition = Oryza sativa Japonica Group Os02g0625000, complete gene.|
| |
| − | Source = Oryza sativa Japonica Group
| |
| | | | |
| − | ORGANISM Oryza sativa Japonica Group
| + | ==Annotated Information== |
| − | Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
| + | [[File:41.png |right |thumb |345px |''''''Fig. 3 Amounts of Oscry1a, Oscry1b and Oscry2 proteins after various light treatments. '''''']] |
| − | Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
| + | ===Gene Symbol=== |
| − | clade; Ehrhartoideae; Oryzeae; Oryza.
| + | *'''Os02g0625000 <=> Oscry2''' |
| − | |
| + | <br> |
| − | Chromosome = [[:category:Japonica Chromosome 2|Chromosome 2]]|
| + | ===Function=== |
| − | AP = Chromosome 2:25802738..25808437|
| + | *Oscry2 is involved in the promotion of flowering time in rice. |
| − | CDS = 25805529..25805601,25805679..25805959,25807201..25807842,25808073..25808081|
| + | <br> |
| − | GCID = <gbrowseImage1>
| + | ===Expression=== |
| − | name=NC_008395:25802738..25808437
| + | *OsCRY2 gene expression was high in the coleoptile, flower and callus. Light treatment affected neither the expression of any of the OsCRY genes nor the stability of their transcripts. |
| − | source=RiceChromosome02
| + | <br> |
| − | preset=GeneLocation
| + | |
| − | </gbrowseImage1>| | + | ===Phenotype=== |
| − | GSID = <gbrowseImage2>
| + | *Oscry2 protein was negatively regulated by blue light. Moreover, the level of Oscry2 protein also decreased upon red light treatment |
| − | name=NC_008395:25802738..25808437
| + | <br> |
| − | source=RiceChromosome02
| + | |
| − | preset=GeneLocation
| + | ==Labs working on this gene== |
| − | </gbrowseImage2>| | + | *Department of Plant Physiology, National Institute of Agrobiological Sciences, Tsukuba, Ibaraki, 305-8602 Japan |
| − | CDNA = <cdnaseq>atgagggaacatctgaagctgaggagagcattcacttcttcatgcggtcaattggtcttcgagaatattcacgatgaggagcggttcaagtcctggaggcagggaatgacaggatacccattggtagatgctggcatgagggaactttgggctaccggatggacacataatcggataagagttatcatttcaagttttgctgtgaaatttctacttatcccatggacttggggtatgaagtatttttgggatgtgctattggatgctgatctggaaagtgatattcttggttggcagtacatatctgggagcctgcctgatggccatgagctcagtcgtcttgataatccagaggttcaaggtcaaaagtatgacccagatggtgtatatgtaagaacttggatacctgaactagctagaatgccgacagaatggattcatcatccatgggatgcaccgagctgtattcttgaagttgctggagttgagctggggtttaactatcctaagccaatcgtagaccttcacattgctagggagtgtttagatgattccatctccacgatgtggcaattggatacagctgagaaacttgcagaattagatggtgaggttgtggaggacaacttgagcaatatcaagacttttgacatcccaaaagttgttttgagggaaacatctccatgtgctttgcccattgatcaaagagtgccccatgctagcagcaaggatcataatttaaagtcaaaggtattgaaggcctcaaatagaagttctatttgtgttgatatgatcaggtcctcaaagatggaagcaacgagctctgtagcaaactcaccggtatcaaggaaaagatccttttgtgagactgcatttcatgtcccatcttattcatcttcagctgaagtgcattcgcatattcaagatcatggtggttccttagttgggccttcaagatatctcctgcaggaagcaggtagaaactatgttgatgagccaacatga</cdnaseq>|
| + | *Hitachi Central Research Laboratory, Hatoyama, Saitama, 350-0395 Japan |
| − | AA = <aaseq>MREHLKLRRAFTSSCGQLVFENIHDEERFKSWRQGMTGYPLVDA GMRELWATGWTHNRIRVIISSFAVKFLLIPWTWGMKYFWDVLLDADLESDILGWQYIS GSLPDGHELSRLDNPEVQGQKYDPDGVYVRTWIPELARMPTEWIHHPWDAPSCILEVA GVELGFNYPKPIVDLHIARECLDDSISTMWQLDTAEKLAELDGEVVEDNLSNIKTFDI PKVVLRETSPCALPIDQRVPHASSKDHNLKSKVLKASNRSSICVDMIRSSKMEATSSV ANSPVSRKRSFCETAFHVPSYSSSAEVHSHIQDHGGSLVGPSRYLLQEAGRNYVDEPT </aaseq>|
| + | *Faculty of Industrial Science and Technology, Tokyo University of Science, Noda, Chiba, 278-8510 Japan |
| − | DNA = <dnaseqindica>2792..2864#2942..3222#4464..5105#5336..5344#atgcgtgcgtgtgcgctgcttcttctctcaagtggtggaggggaagaggagcacaaggagaggcagacggcgataagtcgctcgctcgccaattcgccatgatcgggtggggctccgctaccgtacacgccccggaggaagcccaggccccgcccatgctgctgagctcgtgatcctgcgctcctggccacaggctgcgattcggcgttggtgcgcccaccctcgatcttggccgcttgcgcgcttccacgatctgagtatcctgtcgcgtactggggtcttaattaatttactagtgaccgtgctcatcttcttcttcttcctcctccttgcaggggtttctggtccgaggcggccatcaagatccgtgcttcttgtcctttggcccgggcggagtggtttctttcttgcacgggacgtgctcgacggaatgcctgtgaggggaattcgctcgctgtgagttgggaggggtggtagctgtgcttgcctgcttggtctggtcatggtggattgagtgcttgggggtggtgggatttggtccctgggcatggccggttcggagaggaccgtggtttggttcaggagggacctcaggatcgacgacaacccggcgttggcctccgcggcgagggacggcgctgtgctccctgtcttcatatggtgccctgcggatgaagggcagttctatcccggccggtgctccaggtggtggctcaagcagtcgctcccccacctcagccagtcactggagtcgctcgggtgcccgctcgtgctgatccgagccgagagtacccttgaggctcttctgcggtgcattgattctgtcggcgccaccagattggtttataatcatctgtatggtatggctactttctcatggcgtttcctgcatcaatggagtttcttatatgttgtgttattctatttctttgtgaaaatatttttttttctttacactttggatgcgaagaaatctgaccatgacgactttgaaagtcttagccagctacatcatgtacttttatgttgtcaaaaggctcaacttaataagttatgtaacatttgatcaaaagctattccgagtgaagccttgtaaacaacatcatagatcttttttttttaagaaaatggattaaaatcatagatcatgccagttgcttacatgctgttctaaatgtaaatacagtagaaagttctctcaatttatccatggttatgtatcataagtcagttcatttagttggtattgacatgatatgtgctacaaacatcactaatacacattttccccacaaatataaaaaatattcaaattcatatataggaagaaggaaactatctctaaacaattaaaattgcattatatgtagtaatctggcagtagtttttcctatcaaaaattcataacaatagctttcgaaaagaataaggcaaaaagcatatgcgcatgaaaatagaaactaggccaagtatgattaacataaatacttcctccgtttcatattataagactttctagcattgcccacattcatatatatgttaataaatctagatatatatgtgtgcctagattcattaatatctatatgaatgtgggcaatgttagaaaatcttataacctgaaacggaggtagtactacataataaagtgccaaataaatctttaggggctaacttgaaccaactatagcttatggtcttatttgtcatagttccactcttcaaatatcaaataccaaatactataaactgtcacatcagaggggaaaatcaaactcaaaggtttgacattgcaaaatgagacggccttttccatttgagctagtacaatattgatatgaaataaacaactttgggttttctagttcagacttcagaaacgtgtacctctaaagttggtacggagtacagctgtgttctctattgttccattccactagcagttttgttttaaaattactcttttcagatatgctggtttaatcttatttgttctcactcttctaaattttagaccctgtttctcttgtgcgtgatgacaaaataaaaaaagagctttcggcactgggaatttccatccagagttttaatggtgatctgctgtatgagccatgggaaatttatgatgatagtggacttgcatttacaacctttaacatgtactgggagaagtgcatggaattacctattgacgcatcaccgtcacttgcaccttggaaattggtgcctgtcccaggtagatcgtggctagtggcctaccattatttatcttttttatttttgaagattttctatgtttttaatttgtctgtacttacagaattatctctagattaagttgtttaccttttttcgagaagttatttacttgcaagcattactcgttttatatttacagatttagtaattgatgcccttcaacctttacactcaatgagtcaatgtctagtttgtcaagatacagctactttaatgcttaacaatttttcagtttgacattcaggtttggagagtgttcgtagctgttctgttgatgacctaggacttgaatcaagcaaggatgaggaatcaagtaatgctttgctaatgagggcctggtctcctggttggcgcaatgcagaaaagatgcttgaagaatttgtctcccatggtctcctagaatactcaaaacatggaatgaaggttgagggagctactacatcattgctatcaccatatcttcattttggtgaggtgagtgtaagaaaagtatatcaacttgtaaggatgcaacaaatcaagtgggaaaatgagggaacatctgaagctgaggagagcattcacttcttcatgcggtcaattggtcttcgagaatattcacggtacttgtgttttaacttcccattcacacatgaaaagtcattgctggggaacttgaaacactacccttggaaagtagatgaggagcggttcaagtcctggaggcagggaatgacaggatacccattggtagatgctggcatgagggaactttgggctaccggatggacacataatcggataagagttatcatttcaagttttgctgtgaaatttctacttatcccatggacttggggtatgaagtatttttgggatgtgctattggatgctgatctggaaagtgatattcttggttggcagtacatatctgggagcctgcctgatggccatgagctcagtcgtcttgataatccagaggtatgcagtcactaaagcacaaaatcctttttttttttttttttttgctatcaggtaagcttgattaaggcatgcttggtctttaccacattttcgatggcccttgtgcaaaaatgtcgcttgacacagtatttatggtaatcaagtcacccaccacacttgggacatgaaccaaactagccatactttatcgaatttgcttacattgatgtggcaaactgtggcattaaactaaatacaggaatttaggaatttctcttcattagaaagttcatatatgatgagactagaatagatttttatatccatgaaattctccacagatcatccacatttcactattcagttaaaaggtgttgaagagaaacagctcaaggaaaacgttagttaaaagaattctgactgtagtgtagttactaacctaggcaaacttttcctggcttggctgaggcataaaactgagctaggatttgcacccttggagtgggaagcaaatgatttttaggtatgccaccttactatttgtttttctataaaatgccatgtgcacgtttgtcatactctcactgagtggcattctagaactttactttatcacaaatggagtgacactcaatcaagtaattctacataaagagcaagctgaattttgttttttccctctaaaagacagtggctgccaggccaagcttgcgaacctaattgtgtactgacgagatcatagcccagcggcctcagccaacttgaaaaataacttggcatggccagcatatgttgccttattttttttccctttaacaagggtcgatatgatgaaacttaaattggcacagatagtatattttggttattgtagtttggttttcattgttcttgtagattatggaaaatgtgattgctacgtattatgccttgtgcatatggtattaatatatgtgattttactgtttctgccatccaccctacaattttcccttgtcacttgtataatgtattgtctataatcaaaattttacgatatatggtttaccttggcacttcctacagatgcattgacaaaactttgtggccttcctttctgcttagttttcaacttgtgattttttgaagtttcactgtactattaggcagaagagctcccttgtgttatacttattttatgtgtctaagtaccaagtgttttatccatgacatgcaagatatttatgtttccctatttggcttttttgatgcaaaactaggttcaaggtcaaaagtatgacccagatggtgtatatgtaagaacttggatacctgaactagctagaatgccgacagaatggattcatcatccatgggatgcaccgagctgtattcttgaagttgctggagttgagctggggtttaactatcctaagccaatcgtagaccttcacattgctagggagtgtttagatgattccatctccacgatgtggcaattggatacagctgagaaacttgcagaattagatggtgaggttgtggaggacaacttgagcaatatcaagacttttgacatcccaaaagttgttttgagggaaacatctccatgtgctttgcccattgatcaaagagtgccccatgctagcagcaaggatcataatttaaagtcaaaggtattgaaggcctcaaatagaagttctatttgtgttgatatgatcaggtcctcaaagatggaagcaacgagctctgtagcaaactcaccggtatcaaggaaaagatccttttgtgagactgcatttcatgtcccatcttattcatcttcagctgaagtgcattcgcatattcaagatcatggtggttccttagttgggccttcaagatatctcctgcaggaagcaggtagaaactatgttgatgaggtaagcttaatcatcatatttgatagacaagtgctgaaaaatttaatgcgatattttcatctttgtagttttttttatcaggaaagcaaacatcccatgaaattaccaccacaagacctataaacataataacattcaacctccaaagtactaggtttaaagtttaaacagcttcgaacactccatgatatagatggtattctgaagttgtgtcttctgcttctttacagccaacatgaactgtgtggagcgcctgtatcgtgatcttagctaatcttaattctgacaacagcttctgctataatgacaaactcatgatatattattgctgcaagctgaccagcttctgtcggcataaatggctttattggataatctaggtgctcaggatgggtagtggaaacccacccatttcacacttccactgcttctagaactaagtctaacaagtcttgataggattagtaaaactgtgcaagtctttgtagtcaaatttcacggcatgtatatttcagtagatattgctggaggtaaagcctccatcgagaaacaagatagcacccaacctatgtttaactatgatactttttctggc</dnaseqindica>|
| + | <br> |
| − | Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001186153.1 RefSeq:Os02g0625000]|
| + | ==References== |
| − | }}
| + | <references> |
| − | [[Category:Genes]] | + | <ref name="ref1"> |
| − | [[Category:Japonica mRNA]]
| + | Involvement of Rice Cryptochromes in De-etiolation Responses and Flowering |
| − | [[Category:Oryza Sativa Japonica Group]] | + | </ref> |
| − | [[Category:Japonica Genes]]
| + | |
| − | [[Category:Japonica Chromosome 2]] | + | </references> |
| − | [[Category:Chromosome 2]]
| + | <br> |
| | + | ==Structured Information== |
| | + | [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 2]] |
