Difference between revisions of "Os02g0762600"

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(Created page with "{{JaponicaGene| GeneName = Os02g0762600| Description = Conserved hypothetical protein| Version = NM_001054740.1 GI:115448850 GeneID:4330817| Length = 1788 bp| Definition ...")
 
 
(8 intermediate revisions by 3 users not shown)
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{{JaponicaGene|
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The rice ''' Os02g0762600''' was reported as '''SGL1''' in 2005 <ref name="ref1" /> by researchers from the USA.
GeneName = Os02g0762600|
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<br>
Description = Conserved hypothetical protein|
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==Annotated Information==
Version = NM_001054740.1 GI:115448850 GeneID:4330817|
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===Gene Symbol===
Length = 1788 bp|
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*''' Os02g0762600 <=> SGL1'''
Definition = Oryza sativa Japonica Group Os02g0762600, complete gene.|
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<br>
Source = Oryza sativa Japonica Group
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===Function===
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*SG1 decreases responses to BRs and elongation of organs such as seeds and the internodes of rachis branches through decreased cellular proliferation.
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<br>
  
  ORGANISM  Oryza sativa Japonica Group
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===Mutant===
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
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*Overexpression of SG1 in rice produced a phenotype with short grains and dwarfing reminiscent of brassinosteroid (BR)-deficient mutants, with wide, dark-green, and erect leaves. However, the endogenous BR level in the SG1 overexpressor (SG1:OX) plants was comparable to the wild type. SG1:OX plants were insensitive to brassinolide in the lamina inclination assay.
            Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
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*SG1:OX plants, RNA interference knockdown plants that down-regulated SG1 and a related gene, SG1-LIKE PROTEIN1, had longer grains and internodes in rachis branches than in the wild type.
            clade; Ehrhartoideae; Oryzeae; Oryza.
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<br>
|
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[[File:43.png |center |thumb |10000px |''''''Figure 1. Identification of the rice SG1 gene by activation tagging.'''''']]
Chromosome = [[:category:Japonica Chromosome 2|Chromosome 2]]|
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<br>
AP = Chromosome 2:33005871..33007658|
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==Labs working on this gene==
CDS = 33006887..33006895,33007006..33007458|
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*National Institute of Agrobiological Sciences, Tsukuba, Ibaraki 305–8602, Japan (H.N., A.T., T.T., M.O., H.N.,H.I., M.M.);
GCID = <gbrowseImage1>
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*Graduate School of Science and Technology, Tokyo University of Science, Noda, Chiba 278–8510,Japan (A.T.);
name=NC_008395:33005871..33007658
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*RIKEN Advanced Science Institute, Wako, Saitama 351–0198, Japan (S.F.)
source=RiceChromosome02
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<br>
preset=GeneLocation
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==References==
</gbrowseImage1>|
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<references>
GSID = <gbrowseImage2>
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<ref name="ref1">
name=NC_008395:33005871..33007658
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SHORT GRAIN1 Decreases Organ Elongation and Brassinosteroid Response in Rice
source=RiceChromosome02
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</ref>
preset=GeneLocation
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</gbrowseImage2>|
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</references>
CDNA = <cdnaseq>atggcatgcatcaacatgtacaacccggacggcggcgcggcgttcgggggcggccagccgccggcgctgggcccgcgcatctccttctccagcgactttgtcgtcgagccaccgccgccggtgcagaaccgggcgatgaacctgcggtgccaggaggaggatatcaacttcgagttctcggtgggtagccaccccatgatggccgccgaccagctcttctccaagggcaggatccttcccctcaaggacggcggcttctcctccggccggcctcccaccacgctccgcgacgagcttcgctgcgacgacagggcgtcggccaagggatccagccggtggaaggagatgctcggcctgcggaagcctctctgcgtcggcggcgtcaatggcaccgccaagaagagcaccaccgtcgacaccgagatggtcaccgacgtggccgattccaagcaggagcaatga</cdnaseq>|
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<br>
AA = <aaseq>MACINMYNPDGGAAFGGGQPPALGPRISFSSDFVVEPPPPVQNR                    AMNLRCQEEDINFEFSVGSHPMMAADQLFSKGRILPLKDGGFSSGRPPTTLRDELRCD                    DRASAKGSSRWKEMLGLRKPLCVGGVNGTAKKSTTVDTEMVTDVADSKQEQ</aaseq>|
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==Structured Information==
DNA = <dnaseqindica>764..772#201..653#acccttgagccgtaacagtgacctgtttctgattcaattcaacaacgagcccgtttcctgctcacacaaccaccttttaaacgcctcatcacctccatcctcgcaactcgaagcgaattgagctcacagtggagaagggagagcacgagagggagcagaagcgcgcgaggagaggccacgaccaccaccagagcgtcaaaatggcatgcatcaacatgtacaacccggacggcggcgcggcgttcgggggcggccagccgccggcgctgggcccgcgcatctccttctccagcgactttgtcgtcgagccaccgccgccggtgcagaaccgggcgatgaacctgcggtgccaggaggaggatatcaacttcgagttctcggtgggtagccaccccatgatggccgccgaccagctcttctccaagggcaggatccttcccctcaaggacggcggcttctcctccggccggcctcccaccacgctccgcgacgagcttcgctgcgacgacagggcgtcggccaagggatccagccggtggaaggagatgctcggcctgcggaagcctctctgcgtcggcggcgtcaatggcaccgccaagaagagcaccaccgtcgacaccgagatggtcaccgacgtggccgattccaagcaggtcagtgagccatgattggcagtccaccatgccacacacatggtacgcagttcattagtacacggatgtatgataggttgtctcattaaggatcctttgatgcactgcaggagcaatgagatgacatatatgggactcagccaaaacacacatggaactctcgtctctgtctcatattgtgaccatcctcttgcattgtacttgtctcaaaggctagtttttgtagatgattgtgctcggttgcttgtgtgctagatggccagtgtgtgctgaagagcaaacaattgtgttttttttttcttgcataagtgctgtctctctagctagctgtccactagatccatatcagtctttgcttcctctttcttctttttttttttgtttcttttttccccctccaccctgtacaaaatgcagcgcttgtgtagatcgaaaattttatggtgcaatcattagtctgccagatggccagatctgtgaagagaggatagcctatagtgatggagcctttctggcctgtggggatcaacagtgctctcctttgtcttgttccctgctctgctgtatgatttcataaagagggacaagatccacagaagagagtgtgtatgatagagaacgagaggaagaacagaggaaggatccacctgaatcatgatcctttttgtttctagcaaatcgatacttcactctcccgacatgtccgctgcagtgctgcactagatgcacggctctatgcaaagcgttttcaaggttctcaacatacatcaaatcatcttggttttaaattaaactgaaagtagggcattgatgcaagcaatggtgctcaacttttccatctttacaagccaataggactgttaactattgttgagtcactttagttagcggattttgtggtcactttgtccctaatacaggtcgtcatctcggtaaggcgtctagcaatagtggatgtactatatagtactcacaagctccacaagttctattgaaactgctgaaacacagagcagagttgtttgaggctaggaagaaaacgatgcaaaattcaatccgtatcctttagtgaatgctgagcattgtttcaaagcatcaggataaagcaacaaaaacatgcacaactcctctgaag</dnaseqindica>|
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    [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 2]]
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001054740.1 RefSeq:Os02g0762600]|
 
}}
 
[[Category:Genes]]
 
[[Category:Japonica mRNA]]
 
[[Category:Oryza Sativa Japonica Group]]
 
[[Category:Japonica Genes]]
 
[[Category:Japonica Chromosome 2]]
 
[[Category:Chromosome 2]]
 

Latest revision as of 09:41, 15 October 2016

The rice Os02g0762600 was reported as SGL1 in 2005 [1] by researchers from the USA.

Annotated Information

Gene Symbol

  • Os02g0762600 <=> SGL1


Function

  • SG1 decreases responses to BRs and elongation of organs such as seeds and the internodes of rachis branches through decreased cellular proliferation.


Mutant

  • Overexpression of SG1 in rice produced a phenotype with short grains and dwarfing reminiscent of brassinosteroid (BR)-deficient mutants, with wide, dark-green, and erect leaves. However, the endogenous BR level in the SG1 overexpressor (SG1:OX) plants was comparable to the wild type. SG1:OX plants were insensitive to brassinolide in the lamina inclination assay.
  • SG1:OX plants, RNA interference knockdown plants that down-regulated SG1 and a related gene, SG1-LIKE PROTEIN1, had longer grains and internodes in rachis branches than in the wild type.


'Figure 1. Identification of the rice SG1 gene by activation tagging.'


Labs working on this gene

  • National Institute of Agrobiological Sciences, Tsukuba, Ibaraki 305–8602, Japan (H.N., A.T., T.T., M.O., H.N.,H.I., M.M.);
  • Graduate School of Science and Technology, Tokyo University of Science, Noda, Chiba 278–8510,Japan (A.T.);
  • RIKEN Advanced Science Institute, Wako, Saitama 351–0198, Japan (S.F.)


References

  1. SHORT GRAIN1 Decreases Organ Elongation and Brassinosteroid Response in Rice


Structured Information