Difference between revisions of "Os03g0798300"

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(Created page with "{{JaponicaGene| GeneName = Os03g0798300| Description = Similar to Cytosine-5 DNA methyltransferase MET1 (Fragment)| Version = NM_001058104.1 GI:115455936 GeneID:4334435| L...")
 
 
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{{JaponicaGene|
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The rice '''''Os03g0798300''''' was reported as '''''MET1a''''' in 2009 <ref name="ref1" /> and 2014 <ref name="ref2" /> by researchers from Japan.  
GeneName = Os03g0798300|
 
Description = Similar to Cytosine-5 DNA methyltransferase MET1 (Fragment)|
 
Version = NM_001058104.1 GI:115455936 GeneID:4334435|
 
Length = 2245 bp|
 
Definition = Oryza sativa Japonica Group Os03g0798300, complete gene.|
 
Source = Oryza sativa Japonica Group
 
  
  ORGANISM  Oryza sativa Japonica Group
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==Annotated Information==
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
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===Gene Symbol===
            Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
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*'''''Os03g0798300''''' '''''<=>''''' '''''MET1a,OsMET1a'''''
            clade; Ehrhartoideae; Oryzeae; Oryza.
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===Function===
|
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* '''''MET1a''''', one of two rice MET1 genes encodes a maintenance DNA methyltransferase. <ref name="ref1" /> <ref name="ref2" />
Chromosome = [[:category:Japonica Chromosome 3|Chromosome 3]]|
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* Homologous recombination-mediated knock-in targeting of the '''''MET1a''''' gene for a maintenance DNA methyltransferase reproducibly reveals dosage-dependent spatiotemporal gene expression in rice.
AP = Chromosome 3:34129617..34131861|
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CDS = 34129619..34129722,34129811..34129958,34130060..34130257,34130343..34130621,34130721..34130882<br>,34130981..34131199,34131590..34131721|
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===Expression===
GCID = <gbrowseImage1>
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* '''''MET1a''''' and '''''MET1b''''', were expressed in actively replicating and dividing cells, and MET1b is more abundantly expressed than is '''''MET1a'''''.
name=NC_008396:34129617..34131861
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source=RiceChromosome03
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You can also add sub-section(s) at will.
preset=GeneLocation
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</gbrowseImage1>|
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==Labs working on this gene==
GSID = <gbrowseImage2>
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* National Institute for Basic Biology, Okazaki 444-8585, Japan
name=NC_008396:34129617..34131861
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* Graduate School of Science and Technology, Chiba University, Matsudo 271-8510, Japan
source=RiceChromosome03
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* Graduate School of Nutritional and Environmental Sciences, University of Shizuoka, Shizuoka 422-8526, Japan
preset=GeneLocation
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* Graduate School of Horticulture, Chiba University, Matsudo 271-8510, Japan
</gbrowseImage2>|
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* School of Pharmaceutical Sciences, University of Shizuoka, Shizuoka 422-8526, Japan
CDNA = <cdnaseq>cttactaaatgggctattgaatatgaagaacctgctggggatgcatttggtgaaaaccatccagaagctgcagtatttgtcgaaaactgcaatgtgattctgaaggcaattatggacaagtgtggtgattctgatgattgcatctccacttctgaggctgctgaacgagcagctaaactttctgaggacaagattaagaatctgcccgtgcctggcgaagtagaattcataaatggtggccctccgtgtcagggtttttctgggatgaacagattcaatcaaagtccctggagcaaagtccagtgcgagatgatcttagcattcctgtcatttgcggagtatttccgtcctagattctttctcttagaaaatgttaggaactttgtctcgttcaacaaaggacagaccttcagattgacactggcatcactcctggagatgggataccaggtccgatttggaattttagaggcaggggcttatggtgttgcgcagtccaggaaaagggcattcatttgggccgctgcacctggagagactcttccagagtggcctgaaccaatgcacgtctttgctagccctgagctgaaaataactctacctgatggcaagttctacgccgctgtcaagagcaccgctgcaggagcccctttccgctcaattacagttcgagatacaattggggatctaccagctgtggaaaatggcgccggcaaaccaacaattcagtacggaagcggtcctgtgtcttggttccagaagaagattagaagcgacatggcttcactgaatgaccacatatctaaagagatgaatgagctgaacctcataagatgcaagcacattccaaagcgcccaggttgcgactggcatgacctgccagatgaaaaggtgaagctgtccacagggcagatggtggacttgatcccttggtgcttgcccaacacagccaaaaggcacaatcagtggaaaggactgtacggtaggttggactgggagggcaatttccccacttctgtaacggatcctcagccaatggggaaggtcggcatgtgcttccatcctgagcaggacaggatcattactgtccgtgaatgtgctcgatcccagggcttccccgatagctaccgtttcgctggcaacatccagaacaagcacaggcagatcgggaatgccgtgccaccgccccttgcctatgccctcgggaggaagctcaagcaagccatcgacgccaagcgttga</cdnaseq>|
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==References==
AA = <aaseq>LTKWAIEYEEPAGDAFGENHPEAAVFVENCNVILKAIMDKCGDS                    DDCISTSEAAERAAKLSEDKIKNLPVPGEVEFINGGPPCQGFSGMNRFNQSPWSKVQC                    EMILAFLSFAEYFRPRFFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGA                    YGVAQSRKRAFIWAAAPGETLPEWPEPMHVFASPELKITLPDGKFYAAVKSTAAGAPF                    RSITVRDTIGDLPAVENGAGKPTIQYGSGPVSWFQKKIRSDMASLNDHISKEMNELNL                    IRCKHIPKRPGCDWHDLPDEKVKLSTGQMVDLIPWCLPNTAKRHNQWKGLYGRLDWEG                    NFPTSVTDPQPMGKVGMCFHPEQDRIITVRECARSQGFPDSYRFAGNIQNKHRQIGNA                    VPPPLAYALGRKLKQAIDAKR</aaseq>|
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<references>
DNA = <dnaseqindica>3..106#195..342#444..641#727..1005#1105..1266#1365..1583#1974..2105#cacttactaaatgggctattgaatatgaagaacctgctggggatgcatttggtgaaaaccatccagaagctgcagtatttgtcgaaaactgcaatgtgattctgaagtacgccatttttgtttaccctctttgatatgcttatcatgtatatgtaaattgtatcttcagcacgtatctctatacgatcatgcagggcaattatggacaagtgtggtgattctgatgattgcatctccacttctgaggctgctgaacgagcagctaaactttctgaggacaagattaagaatctgcccgtgcctggcgaagtagaattcataaatggtggccctccgtgtcaggtcagttgctatgtggcttttgcctgtataccagggagctcctaacaacacattcgacattgcaagccaattgcttgaccttttgacctatccttttttagggtttttctgggatgaacagattcaatcaaagtccctggagcaaagtccagtgcgagatgatcttagcattcctgtcatttgcggagtatttccgtcctagattctttctcttagaaaatgttaggaactttgtctcgttcaacaaaggacagaccttcagattgacactggcatcactcctggagatgggataccaggtgcttgacacttcctcttcacttgtgcttgtgctatagcatttccatttctgtatacattctaaccttgtttacatgttcttaggtccgatttggaattttagaggcaggggcttatggtgttgcgcagtccaggaaaagggcattcatttgggccgctgcacctggagagactcttccagagtggcctgaaccaatgcacgtctttgctagccctgagctgaaaataactctacctgatggcaagttctacgccgctgtcaagagcaccgctgcaggagcccctttccgctcaattacagttcgagatacaattggggatctaccagctgtggaaaatggcgccggcaaaccaacaattcaggtataccctacatatcgcactagcttcactcgccaagttctcctgttcttaagctgccgctttatgtcagttgaataaactttgtatgatgtgctacagtacggaagcggtcctgtgtcttggttccagaagaagattagaagcgacatggcttcactgaatgaccacatatctaaagagatgaatgagctgaacctcataagatgcaagcacattccaaagcgcccaggttgcgactggcatgacctgccagatgaaaaggtactaacatttggccctctaattaacttctcctgcctcctgttttatttttaaactctgtaaacaccaattactgttcattgactgtgcaagtacaggtgaagctgtccacagggcagatggtggacttgatcccttggtgcttgcccaacacagccaaaaggcacaatcagtggaaaggactgtacggtaggttggactgggagggcaatttccccacttctgtaacggatcctcagccaatggggaaggtcggcatgtgcttccatcctgagcaggacaggatcattactgtccgtgaatgtgctcgatcccaggtacacataccaattttcacaccccatacattcactgctgcaacaggttaatgatgcttaactaatcatcaagtcattgactaacccaaacaaacaaattttcaggaagttttatccttcaaagtaaatttagtactacattttgtctcaatcagcactgtagcagtagatttagttctttaaccataaatcaatggatatattgtcatctctcttttcggcagaactgctttgtccattccttcttgaacctgttcaaacatgcattcattctaccgagatgccattattgcatctgcaactttgttgccctttttctgaatcttctgatctgtttctgaatcttctgatctgttcctacatgacactgtcaccattgtatgcacgcagggcttccccgatagctaccgtttcgctggcaacatccagaacaagcacaggcagatcgggaatgccgtgccaccgccccttgcctatgccctcgggaggaagctcaagcaagccatcgacgccaagcgttgagtggcttttaacttcactgcatcgccctcattttttggtcggtccaaataggtttaactaagcattacagttttctatattttgtgagcaattggactcctaaaattaattctgggatggttacatggattaccttttgt</dnaseqindica>|
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* <ref name="ref1">
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001058104.1 RefSeq:Os03g0798300]|
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Yamauchi T, Johzuka-Hisatomi Y, Fukada-Tanaka S, Terada R, Nakamura I, Iida S.
}}
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Homologous recombination-mediated knock-in targeting of the MET1a gene for a
[[Category:Genes]]
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maintenance DNA methyltransferase reproducibly reveals dosage-dependent
[[Category:Japonica mRNA]]
+
spatiotemporal gene expression in rice. Plant J. 2009 Oct;60(2):386-96. doi:
[[Category:Oryza Sativa Japonica Group]]
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10.1111/j.1365-313X.2009.03947.x. Epub 2009 Jun 9. PubMed PMID: 19519802.
[[Category:Japonica Genes]]
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[[Category:Japonica Chromosome 3]]
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</ref>
[[Category:Chromosome 3]]
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 +
* <ref name="ref2">
 +
Yamauchi T, Johzuka-Hisatomi Y, Terada R, Nakamura I, Iida S. The MET1b gene
 +
encoding a maintenance DNA methyltransferase is indispensable for normal
 +
development in rice. Plant Mol Biol. 2014 Jun;85(3):219-32. doi:
 +
10.1007/s11103-014-0178-9. Epub 2014 Feb 18. PubMed PMID: 24535433.
 +
 
 +
</ref>
 +
</references>
 +
 
 +
==Structured Information==
 +
    [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 3]]

Latest revision as of 15:25, 15 October 2016

The rice Os03g0798300 was reported as MET1a in 2009 [1] and 2014 [2] by researchers from Japan.

Annotated Information

Gene Symbol

  • Os03g0798300 <=> MET1a,OsMET1a

Function

  • MET1a, one of two rice MET1 genes encodes a maintenance DNA methyltransferase. [1] [2]
  • Homologous recombination-mediated knock-in targeting of the MET1a gene for a maintenance DNA methyltransferase reproducibly reveals dosage-dependent spatiotemporal gene expression in rice.

Expression

  • MET1a and MET1b, were expressed in actively replicating and dividing cells, and MET1b is more abundantly expressed than is MET1a.

You can also add sub-section(s) at will.

Labs working on this gene

  • National Institute for Basic Biology, Okazaki 444-8585, Japan
  • Graduate School of Science and Technology, Chiba University, Matsudo 271-8510, Japan
  • Graduate School of Nutritional and Environmental Sciences, University of Shizuoka, Shizuoka 422-8526, Japan
  • Graduate School of Horticulture, Chiba University, Matsudo 271-8510, Japan
  • School of Pharmaceutical Sciences, University of Shizuoka, Shizuoka 422-8526, Japan

References

  1. 1.0 1.1 Yamauchi T, Johzuka-Hisatomi Y, Fukada-Tanaka S, Terada R, Nakamura I, Iida S. Homologous recombination-mediated knock-in targeting of the MET1a gene for a maintenance DNA methyltransferase reproducibly reveals dosage-dependent spatiotemporal gene expression in rice. Plant J. 2009 Oct;60(2):386-96. doi: 10.1111/j.1365-313X.2009.03947.x. Epub 2009 Jun 9. PubMed PMID: 19519802.
  2. 2.0 2.1 Yamauchi T, Johzuka-Hisatomi Y, Terada R, Nakamura I, Iida S. The MET1b gene encoding a maintenance DNA methyltransferase is indispensable for normal development in rice. Plant Mol Biol. 2014 Jun;85(3):219-32. doi: 10.1007/s11103-014-0178-9. Epub 2014 Feb 18. PubMed PMID: 24535433.

Structured Information