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| − | Please input one-sentence summary here.
| + | The rice '''''Os01g0614900''''' was reported as '''''OsATG7''''' in 2014 <ref name="ref1" /> by researchers from Japan. |
| | | | |
| | ==Annotated Information== | | ==Annotated Information== |
| | + | [[File:83-Os01g0614900.png|right|thumb|427px|'''Figure 1.''' ''The Osatg7-1 mutant exhibits a sterility phenotype..<ref name="ref1" />.'']] |
| | + | |
| | + | ===Gene Symbol=== |
| | + | *'''''Os01g0614900''''' '''''<=>''''' '''''ATG7''''','''''OsATG7''''' |
| | ===Function=== | | ===Function=== |
| − | Please input function information here.
| + | * '''''OsATG7''''' is required for autophagy-dependent lipid metabolism in rice postmeiotic anther development |
| − | | + | ===Phenotypic analysis=== |
| − | ===Expression=== | + | * The rates of seed germination and vegetative growth of the Osatg7-1 mutant plants were comparable to those of wild type when grown in a greenhouse or paddy field. |
| − | Please input expression information here.
| + | * By contrast, the Osatg7-1 plants grown in a paddy field showed slower heading (Fig. 1C) and flowering accompanying the delay of anther development including pollen maturation (data not shown), and had slightly larger spikelets (Fig. 1E and F). |
| − | | + | * Surprisingly, unlike Arabidopsis atg mutants, the Osatg7-1 mutant exhibited a sterile phenotype (Fig. 1D) and limited anther dehiscence under normal growth conditions. |
| − | ===Evolution===
| + | * The stomium, an essential structure for anther dehiscence, 27 did not show significant difference between the wild type and the mutant (data not shown), suggesting that the defects in anther dehiscence is attributed to other critical steps. These Osatg7-1 mutant phenotypes were complemented by the expression of OsATG7 (Fig. S3B–S3D). We also identified another mutant allele (Osatg7-2) of OsATG7 (3A-03442; cv Donjing) and a mutant line defective in OsATG9 (2D-00675; cv Hwayoung) from the T-DNA-tag lines of the POSTECH Biotech Center (Kyungbuk, Korea), both of which were sterile, indicating that autophagy plays critical roles in rice reproductive development. |
| − | Please input evolution information here.
| + | * Overall, the present findings using the autophagy-defective mutants demonstrate the important role of autophagy in plant reproductive development and crop production. |
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| | You can also add sub-section(s) at will. | | You can also add sub-section(s) at will. |
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| | ==Labs working on this gene== | | ==Labs working on this gene== |
| − | Please input related labs here.
| + | * Department of Applied Biological Science; Tokyo University of Science; Noda, Chiba Japan |
| − | | + | * Research Institute for Science and Technology |
| | + | * Tokyo University of Science;Noda, Chiba Japan |
| | + | * School of Bioscience and Biotechnology; Tokyo University of Technology; Hachioji, Tokyo Japan |
| | + | * Plant Genetics Laboratory; National Institute of Genetics; Mishima, Shizuoka Japan |
| | + | * Department of Chemical Biological Science; Faculty of Science; Japan Women’s University; Bunkyo-ku, Tokyo Japan; |
| | + | * Faculty of Bioscience; Nagahama Institute of Bio-Science and Technology; Shiga, Japan; |
| | + | * Metabolomic Function Research Group; RIKEN Center for Sustainable Resource Science; Yokohama, Kanagawa Japan; |
| | + | * Environmental Stress Research Unit; Division of Plant Sciences; National Institute of Agrobiological Sciences; Tsukuba, Ibaraki Japan; |
| | + | * Department of Applied Plant Science; Graduate School of Agricultural Sciences; Tohoku University; Sendai, Miyagi, Japan; |
| | + | * Agrogenomics Research Center; National Institute of Agrobiological Sciences; Tsukuba, Ibaraki Japan; |
| | + | * Department of Biological Science and Technology; Tokyo University of Science; Katsushika, Tokyo Japan; |
| | + | * Graduate School of Pharmaceutical Sciences; Chiba University; Chiba, Chiba Japan |
| | ==References== | | ==References== |
| − | Please input cited references here.
| + | <references> |
| | + | * <ref name="ref1"> |
| | + | Kurusu T, Koyano T, Hanamata S, Kubo T, Noguchi Y, Yagi C, Nagata N, Yamamoto |
| | + | T, Ohnishi T, Okazaki Y, Kitahata N, Ando D, Ishikawa M, Wada S, Miyao A, |
| | + | Hirochika H, Shimada H, Makino A, Saito K, Ishida H, Kinoshita T, Kurata N, |
| | + | Kuchitsu K. OsATG7 is required for autophagy-dependent lipid metabolism in rice |
| | + | postmeiotic anther development. Autophagy. 2014 May;10(5):878-88. doi: |
| | + | 10.4161/auto.28279. Epub 2014 Mar 24. PubMed PMID: 24674921. |
| | + | </ref> |
| | + | </references> |
| | | | |
| | ==Structured Information== | | ==Structured Information== |
| − | {{JaponicaGene|
| + | [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 1]] |
| − | GeneName = Os01g0614900|
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| − | Description = Molybdenum cofactor biosynthesis domain containing protein|
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| − | Version = NM_001050104.1 GI:115438557 GeneID:4326644|
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| − | Length = 6030 bp|
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| − | Definition = Oryza sativa Japonica Group Os01g0614900, complete gene.|
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| − | Source = Oryza sativa Japonica Group
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| − | | |
| − | ORGANISM Oryza sativa Japonica Group
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| − | Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
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| − | Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
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| − | clade; Ehrhartoideae; Oryzeae; Oryza.
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| − | |
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| − | Chromosome = [[:category:Japonica Chromosome 1|Chromosome 1]]|
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| − | AP = Chromosome 1:26037483..26043512|
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| − | CDS = 26037722..26037889,26037994..26038141,26038265..26038380,26038478..26038660,26038733..26038921<br>,26039008..26039157,26039249..26039494,26039571..26039718,26039861..26039976<br>,26040069..26040254,26040470..26040658,26040736..26040885,26040998..26041139<br>,26041219..26041339,26041448..26041634,26041779..26041873,26041958..26042012<br>,26042111..26042302,26042392..26042588,26043269..26043419|
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| − | GCID = <gbrowseImage1>
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| − | name=NC_008394:26037483..26043512
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| − | source=RiceChromosome01
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| − | preset=GeneLocation
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| − | </gbrowseImage1>|
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| − | GSID = <gbrowseImage2>
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| − | name=NC_008394:26037483..26043512
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| − | source=RiceChromosome01
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| − | preset=GeneLocation
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| − | </gbrowseImage2>|
| |
| − | CDNA = <cdnaseq>atggcggcgcgggcggaggcggcggcggcggcgccgcggccgctgcaggcggcggcgatcggcgtctgcgcggagacgggcttctgggacgcgctccgccgcctcaagctggacgtcctcggcaccgacgactcccccatccccatcaccggttattatactccacgccaatatgagaaaattgcaagcctctttaggatatgcccagaatcgatactgccaccttctgccaattcctttggcgataggaacaattgtccagtcccagggaccctactaaacactaataacatgagaggattccaaaacttggacagagcacttctactgaaagctgaagcaaagaagatcttgcatgatattaaatctggcaaagtagaagagaatcctgctttgctactaaggttccttgtgatatcatttgctgatctgaagaattggaaagtatattacaatgtcgcattcccctcgttgatttttgactccaagataactttgctcagcttgaaacttgcctcacaagtgcttaagcaagaagaggcaacatccttgtctaatgcatttactgagtggcgtaaatcaagtgaaacaacagttgttccattctttctgatcaatatatccccagattcatctgctactataagacagctgaaggattggaaagcttgccagggcaatggccagaagttgctattcggattttatgatcatggtaatcgaggttttcctggatgggctcttagaaattatattgcattcgtgagcctgcgttggaagattgagaaagttcattttttctgctaccgagaaaaacgaggacgtcctgacatacagcagtcccttgtcggcgaagcatcatttccggcacctcatgcaggctgggatgaacctgattatgtgcctgaagcaattggatgggaaggagaaacggccgggaaggaatcgaaagagatgaaaccgaaagaaattgatctttcttcaattaatccagcaagtcaagatgaagaaaaacagctgatgcacttgaagcttatgggatggcgccacttccctgtgaatcttgacaagttagctggggtccgttgtcttttgttgggtgctggaactcttggatgtgaagtcgcacgcctacttatgacctggggtgttcggaaactaacagtggttgatgatggttgcgtttccatgtctgatctagtcaaacaatccctctacacggataaggattgtggtgtcccaagagtgactgcaatagtcccacatctaaaagaaagatgttctgcggtggaagttgaaggcatccaaatgggaataccaaagcttgagtataatatttctgccagcaaaatatcaagtattactgatgattgcaagcgtctccaaacattagttgattccaatgatgtggtcttcttgttgaatgaaacatgggagggaatgtggcttccaactcttttatgtgcagacaaaaacaagattgccattactgtgttgttaggatatgacaattaccttgtcatgcgacatggtgctggtccaggaacaaaaagtggaggtatggatgaagggattgctcagatagagaatttgtccacacaagacgctctcggtcggcaaagattgggctgctgtttctgcagtgatactacttcccttgttaattcagatcataatggagcactggatcagcagtcggcagtaatattacctgggctgacctcagttgcatctggcaaagcagtggagctctttgctaggatgttacatcatccagatgaaattcatgctccaggagatattgctggtacagacactgagcatcagcttggtctattgccacatcagatgcaaggatcgctctcaaagtgtgtcttgtcaactgtgctgtgcaattcctcaagcaactgtattgcatgttccaatgctgttttatcagaatatagaagaagaggatttgattttgtaacgcaggccatcacctgtccaacatatttgaaagaccttacaggcatatctgatttgaaaaaaccatttgcttctaaaatttcagccagcattcctgtttctaaaacttcggccagcattcctgtaaacctagagaagctgtccagtgcccgatgtctacttttaggtgctggaacacttggatgtgatgttgctcgtattcttatggactgtggtgtgcggaaactaacagtagttgacagtggtcgagttgttgtgtcgaatttggcaagacagtcactctacacatctgatgatcgtgacagcccaaaagcatcagcaatactagggcgtttgaaagagagatgtccttcagtggatgcaaaaggaattaaaatggaaataccaatgccaggccatcctgtatcacctaatgaagcagtcagtgtgcttgaagattgcaaacgcctccaggagttggtatcttctcatgatgctgtcttcttgctgaccgacacaagggaaagtaggtggcttccaacacttctctgcgcaaatgaaaacaagattgctattactgcagcattaggatatgacagttaccttgtcatgcgacatggggctggtccaggcacgaattgtggaagtccagatgtggttgctgctgctgatacactgtctgcagaagatgttcttggtcgtcagagactaggatgttatttctgcaatgacgtcgttgctcctgttgattccgtgtccaaccgaacactggatcaacaatgtacagtaacacggcctggattgtcctccattacatctggctgtgcggcagacctcttcacaagaatgttacatcatccagatgggatccatgctccaggagagattgctggcacaagcagtgagggtccacttggtctattgccgcatcagatacgaggatcactctcgcagtacaacttactaaccctattgggctattcctcgagcaattgtaccgcatgttccaatgcagtgttgtctgaataccataggagagggatggattttgtgatgcaggtgatcaacgaaccaacctatctggaagacctcaccggccttactgacttgatgaaatcagcggcctattctcaggtcgagtggattgatgaagttgacgatgacgacgagatggatatatga</cdnaseq>|
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| − | AA = <aaseq>MAARAEAAAAAPRPLQAAAIGVCAETGFWDALRRLKLDVLGTDD SPIPITGYYTPRQYEKIASLFRICPESILPPSANSFGDRNNCPVPGTLLNTNNMRGFQ NLDRALLLKAEAKKILHDIKSGKVEENPALLLRFLVISFADLKNWKVYYNVAFPSLIF DSKITLLSLKLASQVLKQEEATSLSNAFTEWRKSSETTVVPFFLINISPDSSATIRQL KDWKACQGNGQKLLFGFYDHGNRGFPGWALRNYIAFVSLRWKIEKVHFFCYREKRGRP DIQQSLVGEASFPAPHAGWDEPDYVPEAIGWEGETAGKESKEMKPKEIDLSSINPASQ DEEKQLMHLKLMGWRHFPVNLDKLAGVRCLLLGAGTLGCEVARLLMTWGVRKLTVVDD GCVSMSDLVKQSLYTDKDCGVPRVTAIVPHLKERCSAVEVEGIQMGIPKLEYNISASK ISSITDDCKRLQTLVDSNDVVFLLNETWEGMWLPTLLCADKNKIAITVLLGYDNYLVM RHGAGPGTKSGGMDEGIAQIENLSTQDALGRQRLGCCFCSDTTSLVNSDHNGALDQQS AVILPGLTSVASGKAVELFARMLHHPDEIHAPGDIAGTDTEHQLGLLPHQMQGSLSKC VLSTVLCNSSSNCIACSNAVLSEYRRRGFDFVTQAITCPTYLKDLTGISDLKKPFASK ISASIPVSKTSASIPVNLEKLSSARCLLLGAGTLGCDVARILMDCGVRKLTVVDSGRV VVSNLARQSLYTSDDRDSPKASAILGRLKERCPSVDAKGIKMEIPMPGHPVSPNEAVS VLEDCKRLQELVSSHDAVFLLTDTRESRWLPTLLCANENKIAITAALGYDSYLVMRHG AGPGTNCGSPDVVAAADTLSAEDVLGRQRLGCYFCNDVVAPVDSVSNRTLDQQCTVTR PGLSSITSGCAADLFTRMLHHPDGIHAPGEIAGTSSEGPLGLLPHQIRGSLSQYNLLT LLGYSSSNCTACSNAVLSEYHRRGMDFVMQVINEPTYLEDLTGLTDLMKSAAYSQVEW IDEVDDDDEMDI</aaseq>|
| |
| − | DNA = <dnaseqindica>5624..5791#5372..5519#5133..5248#4853..5035#4592..4780#4356..4505#4019..4264#3795..3942#3537..3652#3259..3444#2855..3043#2628..2777#2374..2515#2174..2294#1879..2065#1640..1734#1501..1555#1211..1402#925..1121#94..244#agtttacagattttaatttcgaaggagagagaaaaaaaaaagaagggagagctcgcagtcgcagcgccggcggagggagaagacacggcggcgatggcggcgcgggcggaggcggcggcggcggcgccgcggccgctgcaggcggcggcgatcggcgtctgcgcggagacgggcttctgggacgcgctccgccgcctcaagctggacgtcctcggcaccgacgactcccccatccccatcaccggtgcgaacccctcctcctcctcccctacctttgcttttgttgttcttagttccgatgttttcttccccccgaaaacctgccgtctcgagcggggaacgggaagcgtgcgtatccccgcgtctcccaggcttcccccatggaattcggacgcggtggtggttcgtcggagcgattgttaagagccgtattgtttgcttatgggtggcgatgccgagtgtggatgcttgtagattaggggtttcgctcgcctgagttggtggtttgtgagcggaatattgtttagggagaggttgcggcgatacgaggttttcctgaatgccacattgagttggtctccgtgcgggagttcatgattttgtcgtcgtaatgggtgtatagtaatttggattttagaacttcttctgttgtttaatgatcaatttctagcccgaagccctactgtttgttgtcattactgattgctctttctgcaatattgctgttagcacccaaacagtgatgtatttcagattgtctgttgagaatcctaagagaagtactagcaattagcaaatataattcaaattttgctaggtcattttggttttttagtttggtcgtccatgtgttgccgtgtgaatggttttttcatggtttgatttctcaatcaactgaacaagtttgctgaactttattgctaggttattatactccacgccaatatgagaaaattgcaagcctctttaggatatgcccagaatcgatactgccaccttctgccaattcctttggcgataggaacaattgtccagtcccagggaccctactaaacactaataacatgagaggattccaaaacttggacagagcacttctactgaaagctgaagcaaagaaggtacatgcttgacatggaattttgctagcattaccactaacactactagtttcttaaaaaaaaattaaagcatgtaatatgtgttgcagatcttgcatgatattaaatctggcaaagtagaagagaatcctgctttgctactaaggttccttgtgatatcatttgctgatctgaagaattggaaagtatattacaatgtcgcattcccctcgttgatttttgactccaagataactttgctcagcttgaaacttgcctcacaagtgcttaagcaagaagaggtcatgttcctttgaaccttatagaattacagttgacaaaagatttttcttgttttaccatttccttgttggcactaaagattgttctatttctgcaggcaacatccttgtctaatgcatttactgagtggcgtaaatcaagtgaaacaacaggtttgagatgaatacctaattgggattgttttacttggttatgtcacttgatgcctaaactgtattatattgaaatttctgcagttgttccattctttctgatcaatatatccccagattcatctgctactataagacagctgaaggattggaaagcttgccagggcaatggccagaaggtctgttttgtgcaatacattttgtcatttcatgttttttaccagatgagttctgacaagtgatttagaagactccttatttacctatcattcttcatgcatacctttaatttcatgtgctaatggttgaatttgctgatgcagttgctattcggattttatgatcatggtaatcgaggttttcctggatgggctcttagaaattatattgcattcgtgagcctgcgttggaagattgagaaagttcattttttctgctaccgagaaaaacgaggacgtcctgacatacagcagtcccttgtcggcgaagcatcatttccggcacctcatggtaatttcgtacatctgagaaaaaaaaatagggggaggggggatcctatcaaaataactagtaattttggaagcttttaaagctgacactggttatgctttgtaatagcaggctgggatgaacctgattatgtgcctgaagcaattggatgggaaggagaaacggccgggaaggaatcgaaagagatgaaaccgaaagaaattgatctttcttcaattaatccagcaaggtagattaacatttttttctgggatttggaaataatcagtaattgattgaattacctttgattgctttaataagcacagtcaagatgaagaaaaacagctgatgcacttgaagcttatgggatggcgccacttccctgtgaatcttgacaagttagctggggtccgttgtcttttgttgggtgctggaactcttggatgtgaagtcgcacgcctacttatggttaatgcttttagctgacacaagatttatgttccatttttatggttaatcataacagggcatttaaatgtgcgtatcttttctgctgttaatttatgggtttttttttcagacctggggtgttcggaaactaacagtggttgatgatggttgcgtttccatgtctgatctagtcaaacaatccctctacacggataaggattgtggtgtcccaagagtgactgcaatagtcccacatctaaaagaaagatgttctgcggtggtgagtctttgcagccttatcttaaaatctatgttgtttacatatttctctcatcggtaacaattgctatcatgcaggaagttgaaggcatccaaatgggaataccaaagcttgagtataatatttctgccagcaaaatatcaagtattactgatgattgcaagcgtctccaaacattagttgattccaatgatgtggtcttcttgttgaatgaaacatgggagggaatgtggcttccaactcttttatgtgcagacaaaaacaaggtaaatcgtagacaaccactctgtaattaaggaccttttgagtagttctcataagagagaagtgaatatcatgcacttttaggagatcaggcttgagtggcaaatctgtcaatagattgaccatgcaactcagtttagtattcttcgccttccatttttcatcacatagagtgcccttgggagttggaactaataatgagttggctccgctgcagattgccattactgtgttgttaggatatgacaattaccttgtcatgcgacatggtgctggtccaggaacaaaaagtggaggtatggatgaagggattgctcagatagagaatttgtccacacaagacgctctcggtcggcaaagattgggctgctgtttctgcagtgatactacttcccttgttaatgtataactgtggaaaattactttatttgtgttttatcgcgtgattttgcatttatgacataattttggtatgcttaatcttattctttgcagtcagatcataatggagcactggatcagcagtcggcagtaatattacctgggctgacctcagttgcatctggcaaagcagtggagctctttgctaggatgttacatcatccagatgagtaagtatacctacatgaaagataggtgtaaagtgcaacatacatttgtatagcattgtctgtgatagttgaatagttggttgacctagtacatgagaacataaaaacaagatgatgccttatagaattttacttcttgtagaattcatgctccaggagatattgctggtacagacactgagcatcagcttggtctattgccacatcagatgcaaggatcgctctcaaagtgtgtcttgtcaactgtgctgtgcaattcctcaagcaactgtattgcatgttccaatgctgtacgtaaagtagaacatatgcaggactaaattctcataattctatttattctaatgtttctgcatgctattacaggttttatcagaatatagaagaagaggatttgattttgtaacgcaggccatcacctgtccaacatatttgaaagaccttacaggcatatctgatttgaaaaaaccatttgcttctaaaatttcagccagcattcctgtttctaaaacttcggccagcattcctgtaaacctagagaagctgtccagtgcccgatgtctacttttaggtgctggaacacttggatgtgatgttgctcgtattcttatggttagtctttgtccagttctacttttatgttgaactacgaacagacttaacaaaacatttctttgactatggtggaaacaaaacttttcaggactgtggtgtgcggaaactaacagtagttgacagtggtcgagttgttgtgtcgaatttggcaagacagtcactctacacatctgatgatcgtgacagcccaaaagcatcagcaatactagggcgtttgaaagagagatgtccttcagtggtaaatttcaattctgttccttcaaagcaatcttcattttctcacattcttgctccctttcatgtctgagcatatttcccttgtaggatgcaaaaggaattaaaatggaaataccaatgccaggccatcctgtatcacctaatgaagcagtcagtgtgcttgaagattgcaaacgcctccaggagttggtatcttctcatgatgctgtcttcttgctgaccgacacaagggaaagtaggtggcttccaacacttctctgcgcaaatgaaaacaaggtaattcttgtgtgtattcttcactaatgtagacttgtgaagtgttacatgataatatccctcgcaccgcagattgctattactgcagcattaggatatgacagttaccttgtcatgcgacatggggctggtccaggcacgaattgtggaagtccagatgtggttgctgctgctgatacactgtctgcagaagatgttcttggtcgtcagagactaggatgttatttctgcaatgacgtcgttgctcctgttgatgtaatgttgcctaaactttggaaattatactctttttacttaacatgctacattctgcaactgtcacatcattttccttaaccatcttgtgatgtagtccgtgtccaaccgaacactggatcaacaatgtacagtaacacggcctggattgtcctccattacatctggctgtgcggcagacctcttcacaagaatgttacatcatccagatgggtaagtgactggatacctgaacataatatgaacttgcgcgatatcatttccagggaaaatgttggcggcatttggtgattgaaaaaccaactgcatttaattgatctttactacattctgcaggatccatgctccaggagagattgctggcacaagcagtgagggtccacttggtctattgccgcatcagatacgaggatcactctcgcagtacaacttactaaccctattgggctattcctcgagcaattgtaccgcatgttccaatgcagtaagtaaacatttatgattgcatgatttggaacagtttctttagaacttctttcttgtattgtattgcttcttcctcatgtgatttggtgcaaaatattgcaggtgttgtctgaataccataggagagggatggattttgtgatgcaggtgatcaacgaaccaacctatctggaagacctcaccggccttactgacttgatgaaatcagcggcctattctcaggtcgagtggattgatgaagttgacgatgacgacgagatggatatatgacgtgttgcatgttttttttttcatgatgttaacacgtgtaaatacaattcatacgcatacttagtccatcagacgatgagaatggcgttcttgaatctcgaatagcctcttcttaaccaactagcaaatcacagtgtaaacattaccaatctctggtgcaacaaacaattgtaacctaggggaaaaaaatgtacactttgctaatattcaatgctaatgttgttcccattctcaattcc</dnaseqindica>|
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| − | Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001050104.1 RefSeq:Os01g0614900]|
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| − | }}
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| − | [[Category:Genes]] | |
| − | [[Category:Japonica mRNA]]
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| − | [[Category:Oryza Sativa Japonica Group]] | |
| − | [[Category:Japonica Genes]] | |
| − | [[Category:Japonica Chromosome 1]]
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| − | [[Category:Chromosome 1]]
| |
