Difference between revisions of "Os03g0133400"

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(Created page with "{{JaponicaGene| GeneName = Os03g0133400| Description = Peptidoglycan-binding LysM domain containing protein| Version = NM_001055410.1 GI:115450548 GeneID:4331523| Length =...")
 
 
(7 intermediate revisions by 3 users not shown)
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{{JaponicaGene|
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The rice '''Os03g0133400''' was reported as ''' CEBiP''' in 2010 <ref name="ref1" /> by researchers from the Japan.
GeneName = Os03g0133400|
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<br>
Description = Peptidoglycan-binding LysM domain containing protein|
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==Annotated Information==
Version = NM_001055410.1 GI:115450548 GeneID:4331523|
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[[File:44.png |left |thumb |234px |''''''Figure 1. Effects of knockdown of CEBiP on the infection behavior of M. oryzae in rice leaf sheaths.'''''']]
Length = 2799 bp|
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===Gene Symbol===
Definition = Oryza sativa Japonica Group Os03g0133400, complete gene.|
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*'''Os03g0133400 <=> CEBiP'''
Source = Oryza sativa Japonica Group
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<br>
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===Function===
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*The plasma membrane glycoprotein CEBiP, which possesses LysM domains, is a receptor for the chitin elicitor (CE) in rice.
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*Perception of CE by CEBiP contributes to disease resistance against the rice blast fungus, Magnaporthe oryzae, and that enhanced responses to CE by engineering CEBiP increase disease tolerance.  
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<br>
  
  ORGANISM  Oryza sativa Japonica Group
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===Expression===
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
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*The expression of either CRXa1 or CRXa3, each of which contains the whole extracellular portion of CEBiP, the whole intracellular domain of XA21, and the transmembrane domain from either CEBiP or XA21, induced cell death accompanied by an increased production of reactive oxygen and nitrogen species after treatment with CE.
            Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
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<br>
            clade; Ehrhartoideae; Oryzeae; Oryza.
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|
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===Evolution===
Chromosome = [[:category:Japonica Chromosome 3|Chromosome 3]]|
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*Knockdown of CEBiP expression allowed increased spread of the infection hyphae. To enhance defense responses to CE, the researchers constructed chimeric genes composed of CEBiP and Xa21, which mediate resistance to rice bacterial leaf blight.  
AP = Chromosome 3:1857247..1860045|
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<br>
CDS = 1857333..1857999,1859105..1859225,1859318..1859505,1859597..1859691|
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GCID = <gbrowseImage1>
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==Labs working on this gene==
name=NC_008396:1857247..1860045
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*Division of Plant Sciences, National Institute of Agrobiological Sciences, Kannondai 2-1-2, Tsukuba, Ibaraki,305-8602 Japan,
source=RiceChromosome03
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*Department of Life Sciences, Faculty of Agriculture, Meiji University, Higashi-mita 1-1-1, Tama-ku, Kawasaki,Kanagawa, 214-8571 Japan
preset=GeneLocation
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<br>
</gbrowseImage1>|
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==References==
GSID = <gbrowseImage2>
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<references>
name=NC_008396:1857247..1860045
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<ref name="ref1">
source=RiceChromosome03
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Perception of the chitin oligosaccharides contributes to disease resistance to blast fungus Magnaporthe oryzae in rice
preset=GeneLocation
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</ref>
</gbrowseImage2>|
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CDNA = <cdnaseq>atggcgtcgctcaccgccgccctggccacgccggcggccgctgccctcctcctcctcgtcctcctcgccgcccccgcctccgccgccaacttcacctgcgcggtggcttcaggcaccacctgcaagtccgccatcctctacacctcccccaacgccaccacctacggcaacctcgtcgcccgcttcaacaccaccaccctccccgacctcctcggcgccaacggcctccccgacggcacgctttcctccgcccccgtcgccgccaattccaccgtcaaaatccccttccgctgccgctgcaacggcgacgtcggccagtcggaccgcctccccatctacgtcgtgcagccgcaggacgggctcgacgccatcgcgcgcaacgtgttcaacgccttcgtcacctaccaggagatcgccgccgcgaacaacatccccgaccccaacaagataaatgtcagccagacgctgtggattccgctgccctgcagctgcgacaaggaggaaggctctaacgtgatgcacctcgcctacagcgtcggcaaaggggagaacacgtcggcgatcgctgccaagtacggggtgacggagtccacgcttctcaccagaaataagatcgacgaccccacgaaattgcagatgggacagattctagatgtcccgctccctgtgtgccgttcatcaatcagcgatacctcagctgatcacaatctgatgctcctcccggatggcacctatggattcaccgcaggaaactgcatccgctgcagctgcagttcaactacctaccagctaaactgcactgcagtacagaacaagggatgcccgtcagtgccactgtgcaatggaacgctgaagcttggtgagacgaacggcaccggttgcggatcaacaacgtgcgcctacagtggttactccaacagttcatcgctcatcatacaaaccagccttgcaactaatcagacaacagcctgccagagaggaggatctgggaggtcgcagttcgctaggtccatgtggagcatgtctgttatctccttccacatggtgttgatcattatctgtttcctttga</cdnaseq>|
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</references>
AA = <aaseq>MASLTAALATPAAAALLLLVLLAAPASAANFTCAVASGTTCKSA                    ILYTSPNATTYGNLVARFNTTTLPDLLGANGLPDGTLSSAPVAANSTVKIPFRCRCNG                    DVGQSDRLPIYVVQPQDGLDAIARNVFNAFVTYQEIAAANNIPDPNKINVSQTLWIPL                    PCSCDKEEGSNVMHLAYSVGKGENTSAIAAKYGVTESTLLTRNKIDDPTKLQMGQILD                    VPLPVCRSSISDTSADHNLMLLPDGTYGFTAGNCIRCSCSSTTYQLNCTAVQNKGCPS                    VPLCNGTLKLGETNGTGCGSTTCAYSGYSNSSSLIIQTSLATNQTTACQRGGSGRSQF                    ARSMWSMSVISFHMVLIIICFL</aaseq>|
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<br>
DNA = <dnaseqindica>87..753#1859..1979#2072..2259#2351..2445#atactcctcctgctccagtgtcaacacgacagtcaaacaaacaccaagcctctcattcccacctctcgaggagagctttccccaccatggcgtcgctcaccgccgccctggccacgccggcggccgctgccctcctcctcctcgtcctcctcgccgcccccgcctccgccgccaacttcacctgcgcggtggcttcaggcaccacctgcaagtccgccatcctctacacctcccccaacgccaccacctacggcaacctcgtcgcccgcttcaacaccaccaccctccccgacctcctcggcgccaacggcctccccgacggcacgctttcctccgcccccgtcgccgccaattccaccgtcaaaatccccttccgctgccgctgcaacggcgacgtcggccagtcggaccgcctccccatctacgtcgtgcagccgcaggacgggctcgacgccatcgcgcgcaacgtgttcaacgccttcgtcacctaccaggagatcgccgccgcgaacaacatccccgaccccaacaagataaatgtcagccagacgctgtggattccgctgccctgcagctgcgacaaggaggaaggctctaacgtgatgcacctcgcctacagcgtcggcaaaggggagaacacgtcggcgatcgctgccaagtacggggtgacggagtccacgcttctcaccagaaataagatcgacgaccccacgaaattgcagatgggacagattctagatgtcccgctccctggtacgtgccttgctgttactgtttagtatggttcttgcaatcttgtgatcgagctcagaagttttttgtttaacagtgaattttctcagtagactagtcttactagtactataagagaagaaacttgaattagttaggcaggtgtttagttcacttcaaactttctaaaattccatcacatcaaatgtttggatatatgcatggagcattaaatatggacaaaaaaaaaaccaattgcacagtttgcatgtaaattgcgagacgaatcttttgagtctaattacgccatgatttgacaatctgatgctataataaacatttgctaatgacggattaattaggtttaataaattcgtctcgcagtttatatacggaatctatactttgttttgttattagtctacgtttaatacttcaaatgtgtgtccgtatacttcaagaaaattttagcacacgaactaaacacggccttactcgtattactacctctacatggttgactggggagactgaagattagctgtgttgttctgttagtttgcatattaaacttaggttaggtatggtaaattatttgcaatatgctgataatatattgctcggattcagtggtatttgcaatgaacttaggctatggtccccttgcatgatggagtttatcagaatcaaaatatctggttgtgactcggaaagttgctctcaagaaaagatagctagctgcacatgcttcgatcgttgagagattgagacaacatgacacatagctccactagcacatgagtagaaagccacaaaattccatcgcaatgttgaggaatttaagctttagagcttgaattcctgcactctttggacttgtataattagttagccgttgctatcaccggacaaactatctgactttgtggtttaaaattacggaataaactaccaataccaatccacaaagttgaccctcgctactcacaaggtttcaaaatatactattatagtactatcttagatggatcttgatgtttactactattcactttcttcggtaagaatgtcatatgaaacgagttcctagacctagtactaacttctggaaaactggtgtcctcagtgtgccgttcatcaatcagcgatacctcagctgatcacaatctgatgctcctcccggatggcacctatggattcaccgcaggaaactgcatccgctgcagctgcagttcaactacctaccagtatgctcccctattatttccatctccttctaagttgtttctgatcaagcagtaaccaaagaatttacatttcttttcactgtgtcaaccaggctaaactgcactgcagtacagaacaagggatgcccgtcagtgccactgtgcaatggaacgctgaagcttggtgagacgaacggcaccggttgcggatcaacaacgtgcgcctacagtggttactccaacagttcatcgctcatcatacaaaccagccttgcaactaatcagacaacagcctgccagagtaagttgagcccgcaaacctgtacaaactcagagtctctgagtttgtttgagttaaagaaacggcaggtttctaatagttgattttgcaggaggaggatctgggaggtcgcagttcgctaggtccatgtggagcatgtctgttatctccttccacatggtgttgatcattatctgtttcctttgatgttggagactactgcaactctagatggtacatttcaaagagttctctacgatctatgattgttgtatacgatatatgattgttgtcgtaacttagattttgatgactggtttatccagctttgaaatttgagttttgactctgttctttagaggatgagtggcacttgtacggctgcttgaataaaacgtcgatgtattgtattcgatctgcatctgaaaaggaatattcattagataggattattcgaaataaaaagatcccacatgtttttgttataggcgttacatgttctggatggatatataatgtaccatgcggaagtatgaatggacttcccaccttccaatcttc</dnaseqindica>|
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==Structured Information==
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001055410.1 RefSeq:Os03g0133400]|
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    [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 3]]
}}
 
[[Category:Genes]]
 
[[Category:Japonica mRNA]]
 
[[Category:Oryza Sativa Japonica Group]]
 
[[Category:Japonica Genes]]
 
[[Category:Japonica Chromosome 3]]
 
[[Category:Chromosome 3]]
 

Latest revision as of 02:09, 16 October 2016

The rice Os03g0133400 was reported as CEBiP in 2010 [1] by researchers from the Japan.

Annotated Information

'Figure 1. Effects of knockdown of CEBiP on the infection behavior of M. oryzae in rice leaf sheaths.'

Gene Symbol

  • Os03g0133400 <=> CEBiP


Function

  • The plasma membrane glycoprotein CEBiP, which possesses LysM domains, is a receptor for the chitin elicitor (CE) in rice.
  • Perception of CE by CEBiP contributes to disease resistance against the rice blast fungus, Magnaporthe oryzae, and that enhanced responses to CE by engineering CEBiP increase disease tolerance.


Expression

  • The expression of either CRXa1 or CRXa3, each of which contains the whole extracellular portion of CEBiP, the whole intracellular domain of XA21, and the transmembrane domain from either CEBiP or XA21, induced cell death accompanied by an increased production of reactive oxygen and nitrogen species after treatment with CE.


Evolution

  • Knockdown of CEBiP expression allowed increased spread of the infection hyphae. To enhance defense responses to CE, the researchers constructed chimeric genes composed of CEBiP and Xa21, which mediate resistance to rice bacterial leaf blight.


Labs working on this gene

  • Division of Plant Sciences, National Institute of Agrobiological Sciences, Kannondai 2-1-2, Tsukuba, Ibaraki,305-8602 Japan,
  • Department of Life Sciences, Faculty of Agriculture, Meiji University, Higashi-mita 1-1-1, Tama-ku, Kawasaki,Kanagawa, 214-8571 Japan


References

  1. Perception of the chitin oligosaccharides contributes to disease resistance to blast fungus Magnaporthe oryzae in rice


Structured Information