Difference between revisions of "Os04g0556300"

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Please input one-sentence summary here.
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The rice '''''Os04g0556300''''' was reported as '''''OsGPX1''''' in 2013 <ref name="ref1" /> by researchers from Brazil.  
  
 
==Annotated Information==
 
==Annotated Information==
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===Gene Symbol===
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*'''''Os04g0556300''''' '''''<=>''''' '''''OsGPX1''''','''''GPX1'''''
 
===Function===
 
===Function===
Please input function information here.
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* Chloroplastic and mitochondrial '''''GPX''''' genes play a critical role in rice development
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* Although the knockdown of '''''OsGPX1''''' did not impair plant regeneration, the plants with silenced '''''OsGPX1''''' (GPX1s plants) showed reduced shoot length and a reduced number of seeds compared to the non-transformed rice plants.
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* '''''OsGPX1''''' and '''''OsGPX4''''' are essential for redox homeostasis which leads to normal growth and development in rice.
  
===Expression===
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===Subcellular localization===
Please input expression information here.
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* '''''OsGPX1''''' is located in mitochondria.
 
 
===Evolution===
 
Please input evolution information here.
 
  
 
You can also add sub-section(s) at will.
 
You can also add sub-section(s) at will.
  
 
==Labs working on this gene==
 
==Labs working on this gene==
Please input related labs here.
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* Department of Genetics, Federal University of Rio Grande do Sul, Rio Grande do Sul, 15053 RS, Brazil
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* Biotechnology Center, Federal University of Rio Grande do Sul, Rio Grande do Sul, 15053 RS, Brazil
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* Department of Biochemistry and Molecular Biology, Federal University of Ceará, Ceará, 60020 CE, Brazil
  
 
==References==
 
==References==
Please input cited references here.
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<references>
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* <ref name="ref1">
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Passaia, G., et al. "Chloroplastic and mitochondrial GPX genes play a critical role in rice development." Biologia plantarum 58.2 (2014): 375-378.
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</ref>
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</references>
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==Structured Information==
 
==Structured Information==
{{JaponicaGene|
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    [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 4]]
GeneName = Os04g0556300|
 
Description = Glutathione peroxidase|
 
Version = NM_001060059.1 GI:115459847 GeneID:4336627|
 
Length = 2002 bp|
 
Definition = Oryza sativa Japonica Group Os04g0556300, complete gene.|
 
Source = Oryza sativa Japonica Group
 
 
 
  ORGANISM  Oryza sativa Japonica Group
 
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
 
            Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
 
            clade; Ehrhartoideae; Oryzeae; Oryza.
 
|
 
Chromosome = [[:category:Japonica Chromosome 4|Chromosome 4]]|
 
AP = Chromosome 4:28237206..28239207|
 
CDS = 28237324..28237371,28237613..28237689,28238203..28238264,28238483..28238601,28238738..28238905<br>,28238993..28239025|
 
GCID = <gbrowseImage1>
 
name=NC_008397:28237206..28239207
 
source=RiceChromosome04
 
preset=GeneLocation
 
</gbrowseImage1>|
 
GSID = <gbrowseImage2>
 
name=NC_008397:28237206..28239207
 
source=RiceChromosome04
 
preset=GeneLocation
 
</gbrowseImage2>|
 
CDNA = <cdnaseq>atggccgccgcgccgtccgccacctccgtccacgacttcaccgtcaaggatgcaagcggaaaagacgtgaacctgagcacctacaaggggaaggttctcctcatcgttaacgtcgcatcccaatgtggcttaactaactccaactacactgagctgagccagctgtatgagaagtacaaggtccaaggctttgagatattggctttcccgtgcaatcagtttggagggcaggaacccggctccaatgaggagattgtccagtttgcttgcactcgcttcaaggctgagtatcccatttttgacaaggttgatgtcaacggtaacaatgctgcacccctgtacaagtatctgaagtctaacaaaggtgggcttttcggtgatagcatcaagtggaacttctccaaattcttggttgacaaggagggtcgcgtggtggatcgctatgcgcccaccacctcccctcttagtattgagaaggatatcaagaagctgcttgggagctcttaa</cdnaseq>|
 
AA = <aaseq>MAAAPSATSVHDFTVKDASGKDVNLSTYKGKVLLIVNVASQCGL                    TNSNYTELSQLYEKYKVQGFEILAFPCNQFGGQEPGSNEEIVQFACTRFKAEYPIFDK                    VDVNGNNAAPLYKYLKSNKGGLFGDSIKWNFSKFLVDKEGRVVDRYAPTTSPLSIEKD                    IKKLLGSS</aaseq>|
 
DNA = <dnaseqindica>119..166#408..484#998..1059#1278..1396#1533..1700#1788..1820#acgtctcgtctctgtctctcggcccaccgcttccatcgttcgtcctcgtctccacgctaccgtttcgcaaccacccgcttcctcctccggagaccgctcggccgccgctcgctccagcatggccgccgcgccgtccgccacctccgtccacgacttcaccgtcaaggtcagttcctcctctcggtcggcggcgctcccttctcgaagggatctgtcctgcagtgattgggatgggctttccaaaacccgtacccgctcgagcagtcgagccgtgcgtactttggggggtgggtggggggggggtgcctgtaatccggggtggtgcttgacgtgaatttgttgagcagtagtaattgggtgtttcaccgaatttcttagcttgttttgcttggtgcgagggcgtgcaggatgcaagcggaaaagacgtgaacctgagcacctacaaggggaaggttctcctcatcgttaacgtcgcatcccaatggtacttaattcacttcattacgccccccattttatgatggaattttactactacaccgtctacacatcaacaggttgatgtaggattgttttagcggaatggctagctagaaaacttccgcaagtttttttttcccccaaaactttcagatttgttgtcttttgccaaagagaataataaactgctgcaaaacagaatatcactagcagattcagagcatccccagccctgttgagcagttgaactgaaccggtcccatatgaatcatgcaaatatcatgatacaagcacagctcattaactcattaactcgtattgtgaactgcgatactgtctttgtttggtctactgcaaagatggtccaaatcaataggtccactgctgcttattttatggaaccgttttctgcataattgtccttatctgacgtaggcagctctatatatatttttttatctatatggaaccatttcaccttacaccgctaagcattttcttcgaccaattatttcagtggcttaactaactccaactacactgagctgagccagctgtatgagaagtacaaggtccaaggtgtgtctttgacccgttgcctttgtatatctttgtatattgtaattgcctttgcatattgtactccttcaccatggaagttggaataattatctagttcatggtcacatggatcattaagctttagttattatatgtgctagtagttcttcactttaaacaattccggttgttgtggttcaaaccgctaaggaatattaccaatgtgtgatttgtaggctttgagatattggctttcccgtgcaatcagtttggagggcaggaacccggctccaatgaggagattgtccagtttgcttgcactcgcttcaaggctgagtatcccatttttgacaaggtaagttaacgcaatacttttaactcaatcagagtaattatcagtgtgaagcaaaatgatataagtcacatgttttatctatcgaagaggtgtttctgtggagtagcattgagtctcttttttttttatctgtcaggttgatgtcaacggtaacaatgctgcacccctgtacaagtatctgaagtctaacaaaggtgggcttttcggtgatagcatcaagtggaacttctccaaattcttggttgacaaggagggtcgcgtggtggatcgctatgcgcccaccacctcccctcttagtattgaggtaatgtcctgcactaccacttgcaatctctttctacaggctgaattgttaggctctcattataacatttccatactatctctgcagaaggatatcaagaagctgcttgggagctcttaaacctaaaggtcgggatctgtagagcaacctgcacttatgcactgtattcagcactgagagttgtattaataaattggtgacatgtacttcacaggttgcatttgcactatactccttgcatcctgaatctttattgtactctgtacctgtatagttttcatgtcaataaatttccttgctgt</dnaseqindica>|
 
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001060059.1 RefSeq:Os04g0556300]|
 
}}
 
[[Category:Genes]]
 
[[Category:Japonica mRNA]]
 
[[Category:Oryza Sativa Japonica Group]]
 
[[Category:Japonica Genes]]
 
[[Category:Japonica Chromosome 4]]
 
[[Category:Chromosome 4]]
 

Latest revision as of 03:20, 16 October 2016

The rice Os04g0556300 was reported as OsGPX1 in 2013 [1] by researchers from Brazil.

Annotated Information

Gene Symbol

  • Os04g0556300 <=> OsGPX1,GPX1

Function

  • Chloroplastic and mitochondrial GPX genes play a critical role in rice development
  • Although the knockdown of OsGPX1 did not impair plant regeneration, the plants with silenced OsGPX1 (GPX1s plants) showed reduced shoot length and a reduced number of seeds compared to the non-transformed rice plants.
  • OsGPX1 and OsGPX4 are essential for redox homeostasis which leads to normal growth and development in rice.

Subcellular localization

  • OsGPX1 is located in mitochondria.

You can also add sub-section(s) at will.

Labs working on this gene

  • Department of Genetics, Federal University of Rio Grande do Sul, Rio Grande do Sul, 15053 RS, Brazil
  • Biotechnology Center, Federal University of Rio Grande do Sul, Rio Grande do Sul, 15053 RS, Brazil
  • Department of Biochemistry and Molecular Biology, Federal University of Ceará, Ceará, 60020 CE, Brazil

References

  1. Passaia, G., et al. "Chloroplastic and mitochondrial GPX genes play a critical role in rice development." Biologia plantarum 58.2 (2014): 375-378.


Structured Information