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| − | Please input one-sentence summary here.
| + | The rice '''''Os03g0738600''''' was reported as '''''OsLOX2''''' in 2014 <ref name="ref1" /> by researchers from China. |
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| | ==Annotated Information== | | ==Annotated Information== |
| | + | |
| | ===Function=== | | ===Function=== |
| − | Please input function information here.
| + | * '''''OsLOX2''''' is a rice type I lipoxygenase, which can confers opposite effects on seed germination and longevity |
| | + | * The '''''OsLOX2''''' gene is essential for rice seed germination |
| | + | * '''''OsLOX2''''' acts in opposite directions during seed germination and longevity during storage. |
| | + | * '''''OsLOX2''''' affects seed deterioration during storage |
| | + | * Appropriate repression of the '''''OsLOX2''''' gene may delay the aging process during the storage without compromising germination under normal conditions. |
| | + | |
| | + | ===Evolution=== |
| | + | * Lines over-expressing '''''OsLOX2''''' showed accelerated seed germination under normal condition and lower seed viability after accelerated aging. RNA interference (RNAi) of '''''OsLOX2''''' caused delayed germination and enhanced seed longevity. |
| | + | * RNAi lines with strongly repressed '''''OsLOX2''''' activity completely lost the capability of germination after accelerated aging. More lipid hydroperoxide were found in OE15 than the control, but less in RNAi lines than in the WT Nipponbare. |
| | | | |
| | ===Expression=== | | ===Expression=== |
| − | Please input expression information here.
| + | * Abundant expression of '''''OsLOX2''''' was detected in panicles, roots, and stems, but not in leaves. |
| | + | * '''''OsLOX2''''' was highly induced during germination. |
| | + | |
| | + | ===Subcellular localization=== |
| | + | * Subcellular localization analysis shows that '''''OsLOX2''''' locates in the cytoplasm, not in the chloroplasts. |
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| | + | [[File:92-Os03g0738600.png|center|thumb|727px|'''Figure 2.''' ''Subcellular localization of OsLOX2 in rice protoplasts.<ref name="ref1" />.'']] |
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| − | ===Evolution===
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| − | Please input evolution information here.
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| | You can also add sub-section(s) at will. | | You can also add sub-section(s) at will. |
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| | ==Labs working on this gene== | | ==Labs working on this gene== |
| − | Please input related labs here.
| + | * State Key Laboratory for Crop Genetics and Germplasm Enhancement, Jiangsu Provincial Center of Plant Gene Engineering, Nanjing Agricultural University, Weigang 1, Nanjing 210095, China |
| | + | * Institute of Crop Science, The National Key Facility for Crop Gene Resources and Genetic Improvement, Chinese Academy of Agricultural Sciences, Beijing 10081, China |
| | + | ==References== |
| | + | <references> |
| | + | * <ref name="ref1"> |
| | + | Huang J, Cai M, Long Q, Liu L, Lin Q, Jiang L, Chen S, Wan J. OsLOX2, a rice |
| | + | type I lipoxygenase, confers opposite effects on seed germination and longevity. |
| | + | Transgenic Res. 2014 Aug;23(4):643-55. doi: 10.1007/s11248-014-9803-2. Epub 2014 |
| | + | May 4. PubMed PMID: 24792034. |
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| − | ==References==
| + | </ref> |
| − | Please input cited references here.
| + | </references> |
| | | | |
| | ==Structured Information== | | ==Structured Information== |
| − | {{JaponicaGene|
| + | [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 3]] |
| − | GeneName = Os03g0738600|
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| − | Description = Similar to Lipoxygenase L-2 (EC 1.13.11.12)|
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| − | Version = NM_001057747.1 GI:115455222 GeneID:4334049|
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| − | Length = 3504 bp|
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| − | Definition = Oryza sativa Japonica Group Os03g0738600, complete gene.|
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| − | Source = Oryza sativa Japonica Group
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| − | | |
| − | ORGANISM Oryza sativa Japonica Group
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| − | Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
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| − | Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
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| − | clade; Ehrhartoideae; Oryzeae; Oryza.
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| − | |
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| − | Chromosome = [[:category:Japonica Chromosome 3|Chromosome 3]]|
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| − | AP = Chromosome 3:31078614..31082117|
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| − | CDS = 31078728..31078914,31078993..31079285,31079400..31079637,31080023..31081917|
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| − | GCID = <gbrowseImage1>
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| − | name=NC_008396:31078614..31082117
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| − | source=RiceChromosome03
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| − | preset=GeneLocation
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| − | </gbrowseImage1>|
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| − | GSID = <gbrowseImage2>
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| − | name=NC_008396:31078614..31082117
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| − | source=RiceChromosome03
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| − | preset=GeneLocation
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| − | </gbrowseImage2>|
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| − | CDNA = <cdnaseq>atgttgggcgggatcatcggcggcctgacgggcaacaagaacgcccgcctcaagggctccctcgtcctcatgcgcaagaacgccctcgacatcaacgacttcggcgccaccgtcatcgacggcatctccgagttcctcggccgcggcgtcacctgccagctcgtcagctcctccctcgtcgaccccaacaatgggaacagggggagggtggggacggaggcgagcctggagcagtggctgacgagcctgccgtcgctgacgacgggagagtccaagttcggggtgacgttcgagtgggaggtggagaagatgggcatacccggcgccatcatcgtcaagaacaaccacgccgccgagttcttcctcaagaccatcaccctcgacaacgtccccggccacggcgccgtcgtcttcgtcgccaactcctggatctaccccgcctccaagtatcgctacaaccgcgtcttcttctccaacgacacttcactgccgagcaagatgccggcggcgctgaagccgtaccgcgacgacgagctccgcaacctgcgcggcgacgaccagcagggcccgtaccaggagcacgaccgcgtctaccgctacgacgtctacaacgacctcggcgagcccgactccggcaaccctcgccctgtcctcggcggctcccccgaccgcccctaccctcgccgcggccgcaccggccgcaaacccaccaaaactgaccccaccgcggagagcaggctgtcattgctggagaacatctacgtgccacgcgacgagcggttcgggcacctgaagatggccgacttcctgggctactccatcaaggcgctcgtcgacggcatcgtgccggcgatccgcacctacgtcgacctcacacccggcgagttcgactccttcaaggacatcctcaagctctacgagggcggcctcaagctgcccagcatcccggcgctggaggagctccgcaagcgcttccctctccagctcgtcaaggacctcatccccgccggcggcgactacctcctcaagctccccatgccgcacgtcatccgggaggacaagaaggcgtggatgaccgacgacgagttcgcccgcgagatcctcgccggcgtcaaccccatggtcatcgcccgcctcaccgagttcccgccgcggagccgcctcgacccggccaggtacggcgaccagacgagcaccatcacggcggcgcacgtcgagcgcgggctcgaggggctcaccgtgcagcaggcgatcgacggcaaccttctctacgtggtggaccaccacgatcatttcatgccctacttgttggatatcaatagcctcgacgacaacttcatctacgccacgcggacgctgctgttcctgcgcggcgacggcacgctggcgccgctcgccatcgagctgagcttgccgcacctgcaggacgacgggctgatcaccgccaggagcaccgtgtacacgccggcggcgcgcggcggcaccggcgccggcgccgtggagtggtgggtgtggcagctcgccaaggcgtacgtcaacgtgaacgactactgctggcaccagctgatcagccactggctcaacacgcacgccgtgatggagcccttcgtcatcgccaccaaccggcagctcagcgtggcgcacccggtgcacaagctgctgctgccgcactaccgcgacaccatgaccatcaacgcgctggcgcggcagacgctcatcaacggcggcggcatcttcgagatgaccgtgttcccgcggaagcacgcgctcgccatgtcgtcggcgttctacaaggactggagcttcgccgaccaggcgctccccgacgaccttgtcaagcgcggcgtcgcggtgccggacccggcgagcccgtacaaggtgcggctgctcatcgaggactacccgtacgccaacgacgggctggccgtctggcacgccatcgagcagtgggccaccgagtacctcgccatctactaccccaacgacggcgtgctccagggcgacgccgagctgcaggcgtggtggaaggaggtccgcgaggtcgggcatggcgacatcaaggacgcgacgtggtggccggagatgaagacggtggcggagctggtcaaggcgtgcgccaccatcatctggatcgggtccgcgctgcacgccgccgtcaacttcgggcagtacccgtacgccgggtacctcccgaaccgtccgtcggtgagccggcggccgatgccggagccgggaacgaaggagtacgacgagctggcgcgcgatccggagaaggtgttcgtccggacaatcaccaagcagatgcaggccatcgtggggatctcgctgctggagatcctgtccaagcactcctccgacgaggtgtacctcggacagcgcgacacgccggagtggacgtcggacgccaaggcgctggaggcgttcaagcggttcggcgcgcggctgacggagatcgagagccgcgtcgtcgccatgaacaaggacccccaccgcaagaaccgtgtcgggccgaccaatttcccctacacgctgctctacccaaacacctccgacctcaagggcgacgctgccggcctctccgccaggggcatccccaacagcatctccatctga</cdnaseq>|
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| − | AA = <aaseq>MLGGIIGGLTGNKNARLKGSLVLMRKNALDINDFGATVIDGISE FLGRGVTCQLVSSSLVDPNNGNRGRVGTEASLEQWLTSLPSLTTGESKFGVTFEWEVE KMGIPGAIIVKNNHAAEFFLKTITLDNVPGHGAVVFVANSWIYPASKYRYNRVFFSND TSLPSKMPAALKPYRDDELRNLRGDDQQGPYQEHDRVYRYDVYNDLGEPDSGNPRPVL GGSPDRPYPRRGRTGRKPTKTDPTAESRLSLLENIYVPRDERFGHLKMADFLGYSIKA LVDGIVPAIRTYVDLTPGEFDSFKDILKLYEGGLKLPSIPALEELRKRFPLQLVKDLI PAGGDYLLKLPMPHVIREDKKAWMTDDEFAREILAGVNPMVIARLTEFPPRSRLDPAR YGDQTSTITAAHVERGLEGLTVQQAIDGNLLYVVDHHDHFMPYLLDINSLDDNFIYAT RTLLFLRGDGTLAPLAIELSLPHLQDDGLITARSTVYTPAARGGTGAGAVEWWVWQLA KAYVNVNDYCWHQLISHWLNTHAVMEPFVIATNRQLSVAHPVHKLLLPHYRDTMTINA LARQTLINGGGIFEMTVFPRKHALAMSSAFYKDWSFADQALPDDLVKRGVAVPDPASP YKVRLLIEDYPYANDGLAVWHAIEQWATEYLAIYYPNDGVLQGDAELQAWWKEVREVG HGDIKDATWWPEMKTVAELVKACATIIWIGSALHAAVNFGQYPYAGYLPNRPSVSRRP MPEPGTKEYDELARDPEKVFVRTITKQMQAIVGISLLEILSKHSSDEVYLGQRDTPEW TSDAKALEAFKRFGARLTEIESRVVAMNKDPHRKNRVGPTNFPYTLLYPNTSDLKGDA AGLSARGIPNSISI</aaseq>|
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| − | DNA = <dnaseqindica>115..301#380..672#787..1024#1410..3304#acacacactcatatccactactactactagctaccgagcactgagcactgcactctgctgctctagaactgaagctttgcattggttggttagtgagagattaattattccaagatgttgggcgggatcatcggcggcctgacgggcaacaagaacgcccgcctcaagggctccctcgtcctcatgcgcaagaacgccctcgacatcaacgacttcggcgccaccgtcatcgacggcatctccgagttcctcggccgcggcgtcacctgccagctcgtcagctcctccctcgtcgaccccagtaagctcacacacacacacacacacacactcgctgactcacatggctcgagctagctaacgccggtggcgtctgcagacaatgggaacagggggagggtggggacggaggcgagcctggagcagtggctgacgagcctgccgtcgctgacgacgggagagtccaagttcggggtgacgttcgagtgggaggtggagaagatgggcatacccggcgccatcatcgtcaagaacaaccacgccgccgagttcttcctcaagaccatcaccctcgacaacgtccccggccacggcgccgtcgtcttcgtcgccaactcctggatctaccccgcctccaagtatcgctacaaccgcgtcttcttctccaacgacgtaattaactaattgatcaatcaatcaaccaaattataatgctattcgtaatctaatcaaacgtctagtagcttaattaattaattgactggttatattgtttttttctgctagacttcactgccgagcaagatgccggcggcgctgaagccgtaccgcgacgacgagctccgcaacctgcgcggcgacgaccagcagggcccgtaccaggagcacgaccgcgtctaccgctacgacgtctacaacgacctcggcgagcccgactccggcaaccctcgccctgtcctcggcggctcccccgaccgcccctaccctcgccgcggccgcaccggccgcaaacccaccaaaactggtacactacccacgaattttcgtacctggagtagtacgatactgttgaaagatattccctgcgtttcaaattaaaaatcattttgattttttttcttaaaatttaaccaaattaatagaaaataaagcaaaattaacaacatcaaattagtttcattaaataaaaaattaaatttattttgattatatgtttattttatattagaactttttttaattttttctataaactttatcaaacttaaaaaaaatttaactacaaaaatcaaaacgacttatataatataaaacagatgtactaaattttatattagaaaatatcgcactactatattgttgaatactaaaaaatcattcgctgacatgtgggacatgtaactttgtagaccccaccgcggagagcaggctgtcattgctggagaacatctacgtgccacgcgacgagcggttcgggcacctgaagatggccgacttcctgggctactccatcaaggcgctcgtcgacggcatcgtgccggcgatccgcacctacgtcgacctcacacccggcgagttcgactccttcaaggacatcctcaagctctacgagggcggcctcaagctgcccagcatcccggcgctggaggagctccgcaagcgcttccctctccagctcgtcaaggacctcatccccgccggcggcgactacctcctcaagctccccatgccgcacgtcatccgggaggacaagaaggcgtggatgaccgacgacgagttcgcccgcgagatcctcgccggcgtcaaccccatggtcatcgcccgcctcaccgagttcccgccgcggagccgcctcgacccggccaggtacggcgaccagacgagcaccatcacggcggcgcacgtcgagcgcgggctcgaggggctcaccgtgcagcaggcgatcgacggcaaccttctctacgtggtggaccaccacgatcatttcatgccctacttgttggatatcaatagcctcgacgacaacttcatctacgccacgcggacgctgctgttcctgcgcggcgacggcacgctggcgccgctcgccatcgagctgagcttgccgcacctgcaggacgacgggctgatcaccgccaggagcaccgtgtacacgccggcggcgcgcggcggcaccggcgccggcgccgtggagtggtgggtgtggcagctcgccaaggcgtacgtcaacgtgaacgactactgctggcaccagctgatcagccactggctcaacacgcacgccgtgatggagcccttcgtcatcgccaccaaccggcagctcagcgtggcgcacccggtgcacaagctgctgctgccgcactaccgcgacaccatgaccatcaacgcgctggcgcggcagacgctcatcaacggcggcggcatcttcgagatgaccgtgttcccgcggaagcacgcgctcgccatgtcgtcggcgttctacaaggactggagcttcgccgaccaggcgctccccgacgaccttgtcaagcgcggcgtcgcggtgccggacccggcgagcccgtacaaggtgcggctgctcatcgaggactacccgtacgccaacgacgggctggccgtctggcacgccatcgagcagtgggccaccgagtacctcgccatctactaccccaacgacggcgtgctccagggcgacgccgagctgcaggcgtggtggaaggaggtccgcgaggtcgggcatggcgacatcaaggacgcgacgtggtggccggagatgaagacggtggcggagctggtcaaggcgtgcgccaccatcatctggatcgggtccgcgctgcacgccgccgtcaacttcgggcagtacccgtacgccgggtacctcccgaaccgtccgtcggtgagccggcggccgatgccggagccgggaacgaaggagtacgacgagctggcgcgcgatccggagaaggtgttcgtccggacaatcaccaagcagatgcaggccatcgtggggatctcgctgctggagatcctgtccaagcactcctccgacgaggtgtacctcggacagcgcgacacgccggagtggacgtcggacgccaaggcgctggaggcgttcaagcggttcggcgcgcggctgacggagatcgagagccgcgtcgtcgccatgaacaaggacccccaccgcaagaaccgtgtcgggccgaccaatttcccctacacgctgctctacccaaacacctccgacctcaagggcgacgctgccggcctctccgccaggggcatccccaacagcatctccatctgatctccatctcatcagatgaggctgctccacggaggcgccagcgtggacaagagtagttttacggtggtctttaccggtagtattttactttcaataattgccatgacacctacacccggaggtgtcatggaggatgaattcgttgtgtaatttccctttcagttcctaataaagaataaggaagcatatggttgtgtagc</dnaseqindica>|
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| − | Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001057747.1 RefSeq:Os03g0738600]|
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| − | }}
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| − | [[Category:Genes]] | |
| − | [[Category:Japonica mRNA]]
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| − | [[Category:Oryza Sativa Japonica Group]] | |
| − | [[Category:Japonica Genes]] | |
| − | [[Category:Japonica Chromosome 3]]
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| − | [[Category:Chromosome 3]]
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