Difference between revisions of "Os01g0686800"

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(Created page with "{{JaponicaGene| GeneName = Os01g0686800| Description = Guanine nucleotide-binding protein beta subunit-like protein (GPB-LR) (RWD)| Version = NM_001050445.1 GI:115439260 Ge...")
 
(Annotated Information)
 
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{{JaponicaGene|
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The rice '''''Os01g0686800''''' was reported as '''''OsRACK1A''''' in 2014 <ref name="ref1" /> by researchers from China.  
GeneName = Os01g0686800|
 
Description = Guanine nucleotide-binding protein beta subunit-like protein (GPB-LR) (RWD)|
 
Version = NM_001050445.1 GI:115439260 GeneID:4324115|
 
Length = 2518 bp|
 
Definition = Oryza sativa Japonica Group Os01g0686800, complete gene.|
 
Source = Oryza sativa Japonica Group
 
  
  ORGANISM  Oryza sativa Japonica Group
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==Annotated Information==
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
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[[File:93-Os01g0686800.png|right|thumb|327px|'''Figure 2.''' ''Intracellular localization of OsRACK1A.<ref name="ref1" />.'']]
            Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
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===Function===
            clade; Ehrhartoideae; Oryzeae; Oryza.
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* The receptor for activated C kinase 1 ('''''OsRACK1''''') is one member of the most important WD repeat–containing family of proteins found in all eukaryotes and is involved in multiple signaling pathways.
|
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* '''''OsRACK1A''''' positively regulated seed germination and negatively regulated the responses of seed germination to both exogenous ABA and H2O2.
Chromosome = [[:category:Japonica Chromosome 1|Chromosome 1]]|
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* '''''OsRACK1A''''' positively regulates seed germination by controlling endogenous levels of ABA and H 2 O 2 and their interaction.
AP = Chromosome 1:30086646..30089163|
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===Expression===
CDS = 30086743..30087633,30088796..30088909|
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* Quantitative real-time PCR analyses showed that the transcript levels of OsRbohs and amylase genes, RAmy1A and RAmy3D, were significantly lower in OsRACK1A-down regulated transgenic lines.
GCID = <gbrowseImage1>
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* The suppression of ABA catabolism rather than an enhancement of ABA biosynthesis may be the major factor for the delay of germination and '''''OsRACK1A''''' may exert its effect by controlling ABA metabolism.
name=NC_008394:30086646..30089163
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===Intracellular Localization===
source=RiceChromosome01
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* Intracellular Localization analysis showed that '''''OsRACK1A''''' was a soluble protein and may anchor in the plasma membrane by means of interacting with other molecules.
preset=GeneLocation
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</gbrowseImage1>|
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You can also add sub-section(s) at will.
GSID = <gbrowseImage2>
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name=NC_008394:30086646..30089163
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==Labs working on this gene==
source=RiceChromosome01
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* Department of Biotechnology, College of Bioscience and Biotechnology, Yangzhou University, Jiangsu, China
preset=GeneLocation
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* Department of Biological Engineering, Huanghuai University, Zhumadian City, Henan Province, China
</gbrowseImage2>|
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* Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee, United States of America
CDNA = <cdnaseq>atggccggcgcgcaggagtctctggtgttggccggcgtgatgcacggccacaacgacgtggtgacggccatcgcgacccccatcgacaactcgccgttcatcgtctcctcctcccgcgacaagtcgctgctggtgtgggacctcaccaaccccgtccagaacgtcggcgagggcgccggcgcctccgagtacggcgtgcccttccgccgcctcaccggccactcccacttcgtccaggacgtcgtcctcagctccgacggccagttcgcgctctctggctcctgggacggcgagctccgcctctgggacctctccaccggggtcaccacccgccgcttcgtcggccacgacaaagacgtcctctccgtcgccttctccgtcgacaaccgccagatcgtctccgcctcccgcgaccgcaccatcaagctgtggaacaccctcggcgagtgcaagtacaccatcggcggcgacctcggcggcggcgagggccacaacgggtgggtctcctgcgtccgcttctcccccaacaccttccagccaaccatcgtctctggctcctgggaccgcaccgtcaaggtgtggaacctcacgaactgcaagctgcgctgcaacctcgagggccatggcggctacgtcaacgctgtcgcggtcagccccgacggttctctgtgcgcgtccggtggcaaagatggcgttaccctgctgtgggacttggctgagggcaagaggctgtactcgcttgacgcgggttccatcattcactcgctctgcttctcgcccaaccgctactggctctgcgcggcgacccaggactctatcaagatctgggatcttgagtcaaagcacattgtgcaggaccttaagcccgagatccctgtctccaagaaccagatgctctactgcacaagcttgaactggagcgcagatggaagcaccctctatgctggttacacagatggaaccatcaggatctacaagatctcaggtttcagctacgccggctag</cdnaseq>|
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AA = <aaseq>MAGAQESLVLAGVMHGHNDVVTAIATPIDNSPFIVSSSRDKSLL                    VWDLTNPVQNVGEGAGASEYGVPFRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLW                    DLSTGVTTRRFVGHDKDVLSVAFSVDNRQIVSASRDRTIKLWNTLGECKYTIGGDLGG                    GEGHNGWVSCVRFSPNTFQPTIVSGSWDRTVKVWNLTNCKLRCNLEGHGGYVNAVAVS                    PDGSLCASGGKDGVTLLWDLAEGKRLYSLDAGSIIHSLCFSPNRYWLCAATQDSIKIW                    DLESKHIVQDLKPEIPVSKNQMLYCTSLNWSADGSTLYAGYTDGTIRIYKISGFSYAG                    </aaseq>|
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==References==
DNA = <dnaseqindica>98..988#2151..2264#gcttcgcttcccaatctctccccagcgccgccgccgccgccatcctccccgagccctagctctcccctatccctcgccgcacgcaccaccaccaaccatggccggcgcgcaggagtctctggtgttggccggcgtgatgcacggccacaacgacgtggtgacggccatcgcgacccccatcgacaactcgccgttcatcgtctcctcctcccgcgacaagtcgctgctggtgtgggacctcaccaaccccgtccagaacgtcggcgagggcgccggcgcctccgagtacggcgtgcccttccgccgcctcaccggccactcccacttcgtccaggacgtcgtcctcagctccgacggccagttcgcgctctctggctcctgggacggcgagctccgcctctgggacctctccaccggggtcaccacccgccgcttcgtcggccacgacaaagacgtcctctccgtcgccttctccgtcgacaaccgccagatcgtctccgcctcccgcgaccgcaccatcaagctgtggaacaccctcggcgagtgcaagtacaccatcggcggcgacctcggcggcggcgagggccacaacgggtgggtctcctgcgtccgcttctcccccaacaccttccagccaaccatcgtctctggctcctgggaccgcaccgtcaaggtgtggaacctcacgaactgcaagctgcgctgcaacctcgagggccatggcggctacgtcaacgctgtcgcggtcagccccgacggttctctgtgcgcgtccggtggcaaagatggcgttaccctgctgtgggacttggctgagggcaagaggctgtactcgcttgacgcgggttccatcattcactcgctctgcttctcgcccaaccgctactggctctgcgcggcgacccaggactctatcaagatctgggatcttgagtcaaagcacattgtgcaggaccttaagcccgagatccctgtctccaagaaccaggtttgtttctccaccttatgcttcatagtggtcatcttgttagttatggaaattatagctattgtagtatacttaggtcgcatgctaatgctattcatatgtggtgagctaatgcttgatgtaccatgttattcagtttgatgcagttctatattactgtcattcgtccacatgattatttgtgctataatttaatagatacttcctctgtttcacaatgcaagtcattttagcatttcccacattcatattgatgtgaatgaatctagacatatatatctatatagattcattaacatcaacatgaatgtgggaaatgctagaatgacttacattgtgaaacggagggagtagttcctatggtctcctttgttgaagttgataacttgtgctataaactatggttgtgaactcaattgtaacttgtttctagcttttatttgaatattgtacttatgcaggatgatggtatttagtttggcaactcttctgttaagaattgtcattgctatatcttagaatctgttcttttacattgttggttattttttgcagtttcaaatcggtacgacaatgtctatatatggtctgatcagcttagactgtatacactaaacatcttgattctgtcatcttaaatatttgattgttagatgttaagttaaattcttatctaccaaaataaagattcattctcataatactaaacggtggaatcatttagctcatttactatctatatacataatcacattatatatatttgctagtaaacccttgaattgtagtatatttttgttagtaaattgctaggagtgctagtttatatgtttatgttactcactgcattttgcatgctattcatatttttctatccatctataaagtatcttgctttgtttatgaagtattatgggtagcttagctttttaagatgaattttacttgtttatgttttatttttctcttggattcactgttcttatacttgtgttggtaacctgtattctcagagtagtatgtttaagctggttagtcataggaaaactttactgtacctttctgatggactattttttgatacatgaaaaacaatcatttttttctagaaaattctgtacctattttgttgatccttttgttgctctcttggctcttgcagatgctctactgcacaagcttgaactggagcgcagatggaagcaccctctatgctggttacacagatggaaccatcaggatctacaagatctcaggtttcagctacgccggctagagatggggagtgttgttttagttatcgcgttctggtaaacgactgtggtatcaccctagtgttctttttggctgtttgaaaggcattaatctgcctgagtacttctgcttaatttacccatctatgtagtagctccagtactgagctcatggatactgtggaatagggatctgttttgcaccatgttttgttttgacttccttttcaatatattgtctgatgaaccatgcgatccatggtgcttctctcttttt</dnaseqindica>|
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<references>
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001050445.1 RefSeq:Os01g0686800]|
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* <ref name="ref1">
}}
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Zhang D, Chen L, Li D, Lv B, Chen Y, Chen J, XuejiaoYan, Liang J. OsRACK1 is
[[Category:Genes]]
+
involved in abscisic acid- and H2O2-mediated signaling to regulate seed
[[Category:Japonica mRNA]]
+
germination in rice (Oryza sativa, L.). PLoS One. 2014 May 27;9(5):e97120. doi:
[[Category:Oryza Sativa Japonica Group]]
+
10.1371/journal.pone.0097120. eCollection 2014. PubMed PMID: 24865690; PubMed
[[Category:Japonica Genes]]
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Central PMCID: PMC4035261.
[[Category:Japonica Chromosome 1]]
+
</ref>
[[Category:Chromosome 1]]
+
</references>
 +
 
 +
==Structured Information==
 +
    [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 1]]

Latest revision as of 04:41, 16 October 2016

The rice Os01g0686800 was reported as OsRACK1A in 2014 [1] by researchers from China.

Annotated Information

Figure 2. Intracellular localization of OsRACK1A.[1].

Function

  • The receptor for activated C kinase 1 (OsRACK1) is one member of the most important WD repeat–containing family of proteins found in all eukaryotes and is involved in multiple signaling pathways.
  • OsRACK1A positively regulated seed germination and negatively regulated the responses of seed germination to both exogenous ABA and H2O2.
  • OsRACK1A positively regulates seed germination by controlling endogenous levels of ABA and H 2 O 2 and their interaction.

Expression

  • Quantitative real-time PCR analyses showed that the transcript levels of OsRbohs and amylase genes, RAmy1A and RAmy3D, were significantly lower in OsRACK1A-down regulated transgenic lines.
  • The suppression of ABA catabolism rather than an enhancement of ABA biosynthesis may be the major factor for the delay of germination and OsRACK1A may exert its effect by controlling ABA metabolism.

Intracellular Localization

  • Intracellular Localization analysis showed that OsRACK1A was a soluble protein and may anchor in the plasma membrane by means of interacting with other molecules.

You can also add sub-section(s) at will.

Labs working on this gene

  • Department of Biotechnology, College of Bioscience and Biotechnology, Yangzhou University, Jiangsu, China
  • Department of Biological Engineering, Huanghuai University, Zhumadian City, Henan Province, China
  • Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee, United States of America

References

  1. 1.0 1.1 Zhang D, Chen L, Li D, Lv B, Chen Y, Chen J, XuejiaoYan, Liang J. OsRACK1 is involved in abscisic acid- and H2O2-mediated signaling to regulate seed germination in rice (Oryza sativa, L.). PLoS One. 2014 May 27;9(5):e97120. doi: 10.1371/journal.pone.0097120. eCollection 2014. PubMed PMID: 24865690; PubMed Central PMCID: PMC4035261.

Structured Information