|
|
| (5 intermediate revisions by 2 users not shown) |
| Line 1: |
Line 1: |
| − | Please input one-sentence summary here.
| + | The rice gene Os05g0353400 was reported as '''''Imp β1''''' in 2010<ref name="ref1" /> by researchers from Korea. |
| | | | |
| | ==Annotated Information== | | ==Annotated Information== |
| | + | ===Gene Symbol=== |
| | + | *'''''Os05g0353400 <=> OsImp β1, Imp β1 |
| | + | |
| | ===Function=== | | ===Function=== |
| − | Please input function information here.
| + | * '''''Importin β1''''' interacts with nuclear transport factors and mediates the import of nuclear proteins. |
| | + | * '''''OsImpβ1''''' is specifically required for pollen tube elongation. |
| | + | |
| | + | |
| | + | ===Expression === |
| | + | [[File:Os05g0353400-1.png|right|thumb|300px|'''Fig. 2. Expression profiles of the OsImpβ1 gene using GUS assay''' '' <ref name="ref1" />.'']] |
| | + | * The researchers isolated a pollen-expressed gene, rice Importin β1 (OsImpβ1), from a T-DNA insertional population that was trapped by a promoterless β-glucuronidase (GUS) gene. The GUS reporter was expressed in the anthers and ovaries from early through mature developmental stages. Its expression was also observed in all floral organs. However, these patterns changed as the spikelet developed. |
| | + | |
| | + | |
| | + | |
| | + | |
| | + | |
| | + | |
| | + | |
| | + | |
| | + | |
| | + | |
| | + | |
| | + | |
| | | | |
| − | ===Expression===
| |
| − | Please input expression information here.
| |
| | | | |
| − | ===Evolution=== | + | === Subcellular localization === |
| − | Please input evolution information here.
| + | [[File:Os05g0353400-2.png|right|thumb|300px|'''Fig. 6. Subcellular localization of OsImpβ1.''' '' <ref name="ref1" />.'']] |
| | + | * OsImportin β1 is located at the nucleus(Figure 6) |
| | | | |
| | You can also add sub-section(s) at will. | | You can also add sub-section(s) at will. |
| | + | ==Labs working on this gene== |
| | + | * Crop Biotech Institute and Department of Plant Molecular Systems Biotechnology, Kyung Hee University, Yongin 446-701, Korea, * International Technical Cooperation Center, Rural Development Administration, Suwon 441-707, Korea |
| | + | * Present address: POSTECH Biotechnology Center, Pohang University of Science and Technology, Pohang 790-784, Korea |
| | + | ==References== |
| | + | <references> |
| | + | * <ref name="ref1"> |
| | + | Han MJ, Jung KH, Yi G, An G. Rice Importin β1 gene affects pollen tube |
| | + | elongation. Mol Cells. 2011 Jun;31(6):523-30. doi: 10.1007/s10059-011-2321-7. |
| | + | Epub 2011 Apr 14. PubMed PMID: 21499832; PubMed Central PMCID: PMC3887616. |
| | | | |
| − | ==Labs working on this gene==
| + | </ref> |
| − | Please input related labs here.
| + | </references> |
| | | | |
| − | ==References==
| |
| − | Please input cited references here.
| |
| | | | |
| | ==Structured Information== | | ==Structured Information== |
| − | {{JaponicaGene|
| + | [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 5]] |
| − | GeneName = Os05g0353400|
| |
| − | Description = Armadillo-like helical domain containing protein|
| |
| − | Version = NM_001061817.1 GI:115463364 GeneID:4338508|
| |
| − | Length = 4766 bp|
| |
| − | Definition = Oryza sativa Japonica Group Os05g0353400, complete gene.|
| |
| − | Source = Oryza sativa Japonica Group
| |
| − | | |
| − | ORGANISM Oryza sativa Japonica Group
| |
| − | Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
| |
| − | Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
| |
| − | clade; Ehrhartoideae; Oryzeae; Oryza.
| |
| − | |
| |
| − | Chromosome = [[:category:Japonica Chromosome 5|Chromosome 5]]|
| |
| − | AP = Chromosome 5:16674613..16679378|
| |
| − | CDS = 16676425..16678835,16678933..16679128|
| |
| − | GCID = <gbrowseImage1>
| |
| − | name=NC_008398:16674613..16679378
| |
| − | source=RiceChromosome05
| |
| − | preset=GeneLocation
| |
| − | </gbrowseImage1>|
| |
| − | GSID = <gbrowseImage2>
| |
| − | name=NC_008398:16674613..16679378
| |
| − | source=RiceChromosome05
| |
| − | preset=GeneLocation
| |
| − | </gbrowseImage2>|
| |
| − | CDNA = <cdnaseq>atgaatatcactcaaatcctgctatcagctcaatctgcagatggtaaccttcgggtagtagcagaagggaacctcaagcagttccaggagcagaatcttcccaacttccttctctccttgtcagtggaactttcggataatgaaaaaccaccagagtctagacgacttgctggtattatccttaagaactccttggatgcaaaggattctgcaaaaaaggaactactgattcagcaatgggtcagcctggatccatcaatcaaacagaagataaaggagtccttgctgataacgctaggatcttcggtgcatgatgctaggcatacctcatcacaagtcattgccaaggttgcatccattgagatcccccggcgtgaatggcaagaactcattgccaaattattgggcaacatgacacaacagggtgcacctgctccactaaagcaagcaactctagaggccttagggtatgtctgtgaggagatttctcctgaacacttggagcaggatcaggtgaatgctgttctaactgctgttgtccagggaatgaaccagacagagctaagccctgaagtccgtcttgcagcagttaaagccctatataatgctcttgattttgctgagagcaactttgcaaatgaaatggaaaggaattatatcatgaaggtaatttgtgatactgctgtatcgaaggaagtggagatcaggcaggcagcctttgaatgccttgttgcaattgcttccacatattatgtacacttggatccttatatgcaaaccattttcaacctgacagctaatgctgtcaaaggagatgaggaagcagttgcacttcaagctattgagttctggagcactatttgtgatgaagagattgagctccaagaagaatatgagggatctgatgatgctaattctactgtaaattatcgcttcattgagaaggccctcccttcacttgttccgatgctgctagaaactctgttaaagcaagaggaagatcaagatcaggatgataatgtatggaacatttccatgagtggtgggacatgccttgggctcattgctagaactgttggtgatgcgattgtgcctcttgtgatgccttttgttgagggtaacatcacaaaaccagattggcattgtcgtgaggcagctacttttgcatttggttctatccttgaaggtccatctgtggagaaacttgctcccctggtacaggctgggtttgacttcctgctgaacacaacaaaagacccgaatagtcaggtaagggacaccactgcatggactcttgggagggtatttgagctcctgcattctccagccagtgcaaatccaattataacaagcgcaaaccttactcgtatcatgactgtcttgctggaaagtagtaaggatgttccaaatgtggctgagaaagtctgtggagccatatattttcttgcccaaggttatgaagacgcagagtcgatttcatctgtgcttacaccttttcttcctaatctcattgctgctctcctttctgcggcggatcgtgctgataccacccacttcaggcttcgtgcatcagcttatgaagcattgaatgagattgtgagagtcagcaacatatctgaaacgtcaggcattataggtcagttactgcaggagatcatgaggagattgaatctgacgtttgatctccatatactttcatctggtgacaaggaaaagcaaagtgatcttcaggcattactgtgtggtgtactgcaggtcatcattcagaaattgagcagctcggatgctaagtcaataattgcccagactgctgatcagttgatgtttctgtttctgcatgtttttgcttgccacagctctactgtacacgaagaagcgatgcttgccatcggtgctcttgcttatgccactggtacagattttgtgaaatacatgcctgagtttttcaagtatctggaagctggcttgcagaattatgaagagtaccaagtctgttccatctctgttggagtggtgggtgatatttgccgtgccttggaagataaaattttgcccttctgtgatgggattatgactgttcttctcaaggacctgtcaaactcgatgcttaatcgttctgtgaagcctccgattttctcatgctttggagacattgctcttgctattggtgataattttgagaaataccttccttatgctatgccaatgcttcaaggagctgccgaacttcttgctgttttggaccatacagatgaggatatggttgattatggtaaccagctcagacggggaatctttgaagcttactctggcatactccagggtataaagggtgcaaaagctcagttgatgataccctatgcaagccatctattgcagttcactgaagctgtctacaaggaccgcagcagggatgagagcgtgacaaaggctgcagttgctgtcctgggggatcttgcggacacactcggctcaagctcaaaggatctgttcaaaagcaacctcttccatgttgagttcctgagggagtgccacgatttggatgatgaagttagggacaccgcgtcatgggcccagggaatgataaaccaagcactggtttcttaa</cdnaseq>|
| |
| − | AA = <aaseq>MNITQILLSAQSADGNLRVVAEGNLKQFQEQNLPNFLLSLSVEL SDNEKPPESRRLAGIILKNSLDAKDSAKKELLIQQWVSLDPSIKQKIKESLLITLGSS VHDARHTSSQVIAKVASIEIPRREWQELIAKLLGNMTQQGAPAPLKQATLEALGYVCE EISPEHLEQDQVNAVLTAVVQGMNQTELSPEVRLAAVKALYNALDFAESNFANEMERN YIMKVICDTAVSKEVEIRQAAFECLVAIASTYYVHLDPYMQTIFNLTANAVKGDEEAV ALQAIEFWSTICDEEIELQEEYEGSDDANSTVNYRFIEKALPSLVPMLLETLLKQEED QDQDDNVWNISMSGGTCLGLIARTVGDAIVPLVMPFVEGNITKPDWHCREAATFAFGS ILEGPSVEKLAPLVQAGFDFLLNTTKDPNSQVRDTTAWTLGRVFELLHSPASANPIIT SANLTRIMTVLLESSKDVPNVAEKVCGAIYFLAQGYEDAESISSVLTPFLPNLIAALL SAADRADTTHFRLRASAYEALNEIVRVSNISETSGIIGQLLQEIMRRLNLTFDLHILS SGDKEKQSDLQALLCGVLQVIIQKLSSSDAKSIIAQTADQLMFLFLHVFACHSSTVHE EAMLAIGALAYATGTDFVKYMPEFFKYLEAGLQNYEEYQVCSISVGVVGDICRALEDK ILPFCDGIMTVLLKDLSNSMLNRSVKPPIFSCFGDIALAIGDNFEKYLPYAMPMLQGA AELLAVLDHTDEDMVDYGNQLRRGIFEAYSGILQGIKGAKAQLMIPYASHLLQFTEAV YKDRSRDESVTKAAVAVLGDLADTLGSSSKDLFKSNLFHVEFLRECHDLDDEVRDTAS WAQGMINQALVS</aaseq>|
| |
| − | DNA = <dnaseqindica>1813..4223#4321..4516#ctagccgcctccgccgcctcctcccccctcaaatccccccacctcctcgcttccccccttcctccgcccgccggagcagagttccttctccttccatccattccgttcgggaatcaggcgagcgcgtcagcatccccctcctcctcctctcgcggccgccttcgtcgcaggcatcgccgtgctctgaccggagggcacttgttctttccttcgtcagagcggaggggagcggaggagcggagccggagatccagatctgcacgggaaggtatctcccgctggtacggtctacttctctctttgacggattgaatccgccgtgccatgatttttttttcttcttcttcttctcattggggggggggggggggcgggggggggggagtttaccctaatccgttttctcttcacttgcgcgcgctgtgagctacggcactcgaatcttctgctttcggtaaaatggaaacgctggttttgcagttcgcctgggattcactgccgtatattgtggggattatctcgctggttgaaggagggaagggtggggtttaaccttgtttttgcttatttatgctagtataagcattcctgtgggtaggttactatcatgttatatatttcgcggtaggcgtgttgcaagtgattttgccctagttggaagggaggggaaggggtgctcattttgacggttttagatgttaagatttaggtcaacatgtgctgcggaagtgtgtatggattcactttgacctaattttttctcttcattgttgcaagaaaggtaatacagatctttctgcaatattccatccactaagtttgtgtagatgagcgcccgctatttgattgggcctattttaccccctttgattttctgatgaccttgcactgaatatactgttccatctcttattgttggtcttcagggcacgagatgtcattgtatactgcccaggtctacctgcgcttgtgctagctgtttaggttattttgtgttttttgttatgtgagttgcttctgggtggtgctgttcagtgtaaacataatacctgtggatgtccaaggtctggttattgtggctattcacatgcttatgttgtgcctatgttgtgtggaccggtttttttttataccacagcatatatgtttgcttttcttatggttgattgataacaaactgatttggcctgttcaagatcctgatactaatagcatattcacctattcaacctgtttactttggtttagtaatttcttcattgtatgtcagggtgttgcccttttatttggttattcatattttatctaatgtgttccgctgacttagtgtacttgtgcagctgcctgttgaatatctaattgcccacagcatagttagtctaattgagctttgcattgttaattgtacttagcttggttcccttgtttagatgaaactcatggccaaatgaggtgcttatccaactgtttaactgagtaacttgattttcttatgggaaacaatcaatttttaagtaagggtaaattaaatttgaataatctttagcagagcttaactgtgttgctaatgtggataacataaatgttgcatggtgatagttctacatcttgtaaccataatttgcaagtatctgtggatggaaaggaattctgaaggaccctaagctaggtcaaactggcccaacggcctttagttgctaggattgttaattgatgtgccttttcattaagtttgtgtaattgtttttcgcttaacatgattaacagctaaaatctgtttctttgatgtctgctaggacagttggtacagccatgaatatcactcaaatcctgctatcagctcaatctgcagatggtaaccttcgggtagtagcagaagggaacctcaagcagttccaggagcagaatcttcccaacttccttctctccttgtcagtggaactttcggataatgaaaaaccaccagagtctagacgacttgctggtattatccttaagaactccttggatgcaaaggattctgcaaaaaaggaactactgattcagcaatgggtcagcctggatccatcaatcaaacagaagataaaggagtccttgctgataacgctaggatcttcggtgcatgatgctaggcatacctcatcacaagtcattgccaaggttgcatccattgagatcccccggcgtgaatggcaagaactcattgccaaattattgggcaacatgacacaacagggtgcacctgctccactaaagcaagcaactctagaggccttagggtatgtctgtgaggagatttctcctgaacacttggagcaggatcaggtgaatgctgttctaactgctgttgtccagggaatgaaccagacagagctaagccctgaagtccgtcttgcagcagttaaagccctatataatgctcttgattttgctgagagcaactttgcaaatgaaatggaaaggaattatatcatgaaggtaatttgtgatactgctgtatcgaaggaagtggagatcaggcaggcagcctttgaatgccttgttgcaattgcttccacatattatgtacacttggatccttatatgcaaaccattttcaacctgacagctaatgctgtcaaaggagatgaggaagcagttgcacttcaagctattgagttctggagcactatttgtgatgaagagattgagctccaagaagaatatgagggatctgatgatgctaattctactgtaaattatcgcttcattgagaaggccctcccttcacttgttccgatgctgctagaaactctgttaaagcaagaggaagatcaagatcaggatgataatgtatggaacatttccatgagtggtgggacatgccttgggctcattgctagaactgttggtgatgcgattgtgcctcttgtgatgccttttgttgagggtaacatcacaaaaccagattggcattgtcgtgaggcagctacttttgcatttggttctatccttgaaggtccatctgtggagaaacttgctcccctggtacaggctgggtttgacttcctgctgaacacaacaaaagacccgaatagtcaggtaagggacaccactgcatggactcttgggagggtatttgagctcctgcattctccagccagtgcaaatccaattataacaagcgcaaaccttactcgtatcatgactgtcttgctggaaagtagtaaggatgttccaaatgtggctgagaaagtctgtggagccatatattttcttgcccaaggttatgaagacgcagagtcgatttcatctgtgcttacaccttttcttcctaatctcattgctgctctcctttctgcggcggatcgtgctgataccacccacttcaggcttcgtgcatcagcttatgaagcattgaatgagattgtgagagtcagcaacatatctgaaacgtcaggcattataggtcagttactgcaggagatcatgaggagattgaatctgacgtttgatctccatatactttcatctggtgacaaggaaaagcaaagtgatcttcaggcattactgtgtggtgtactgcaggtcatcattcagaaattgagcagctcggatgctaagtcaataattgcccagactgctgatcagttgatgtttctgtttctgcatgtttttgcttgccacagctctactgtacacgaagaagcgatgcttgccatcggtgctcttgcttatgccactggtacagattttgtgaaatacatgcctgagtttttcaagtatctggaagctggcttgcagaattatgaagagtaccaagtctgttccatctctgttggagtggtgggtgatatttgccgtgccttggaagataaaattttgcccttctgtgatgggattatgactgttcttctcaaggacctgtcaaactcgatgcttaatcgttctgtgaagcctccgattttctcatgctttggagacattgctcttgctattggtgataattttgagaaataccttccttatgctatgccaatgcttcaaggagctgccgaacttcttgctgttttggaccatacagatgaggatatggttgattatggtaaccagctcagacggggaatctttgaagcttactctggcatactccagggtataaagggtgcaaaagctcagttgatgataccctatgcaagccatctattgcagttcactgaagctgtctacaaggaccgcagcaggttaatgtcatgcacattgcaatttatgttgtattatattggtaagtttttacctgcttagcgcttacatacattacatttgtgtttatactttcagggatgagagcgtgacaaaggctgcagttgctgtcctgggggatcttgcggacacactcggctcaagctcaaaggatctgttcaaaagcaacctcttccatgttgagttcctgagggagtgccacgatttggatgatgaagttagggacaccgcgtcatgggcccagggaatgataaaccaagcactggtttcttaagaggggattattttgttttgtcagttattggggaggtttcttttgtggctgtgccaagaccatttgccacagattgaacgaaaggataccaacatatatgtagcgtcagtcgtaggctgcttctgtgcttttgtcgtcagtctgtcaagtcagtttatgcgtcgcatttggcgtgggtggattctggcattgaatgtcttgaacagctaaacctgttaatgttaatgtattctacctgtggtgtttatcc</dnaseqindica>|
| |
| − | Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001061817.1 RefSeq:Os05g0353400]|
| |
| − | }}
| |
| − | [[Category:Genes]] | |
| − | [[Category:Japonica mRNA]]
| |
| − | [[Category:Oryza Sativa Japonica Group]] | |
| − | [[Category:Japonica Genes]] | |
| − | [[Category:Japonica Chromosome 5]]
| |
| − | [[Category:Chromosome 5]]
| |
