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| − | {{JaponicaGene|
| + | The rice gene Os05g0386800 was reported as '''''OsBC1L4''''' in 2009<ref name="ref1" /> by researchers from China. |
| − | GeneName = Os05g0386800|
| + | ==Annotated Information== |
| − | Description = Similar to Phytochelatin synthetase-like protein 2|
| + | ===Gene Symbol=== |
| − | Version = NM_001061954.1 GI:115463638 GeneID:4338658|
| + | *'''''Os05g0386800 <=> OsBC1L4, BC1L4 |
| − | Length = 3504 bp|
| |
| − | Definition = Oryza sativa Japonica Group Os05g0386800, complete gene.|
| |
| − | Source = Oryza sativa Japonica Group
| |
| | | | |
| − | ORGANISM Oryza sativa Japonica Group
| + | ===Function=== |
| − | Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
| + | * '''''OsBC1L4''''' might be involved in the biosynthesis of cell wall and cellulose in rice. |
| − | Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
| + | ===Mutation=== |
| − | clade; Ehrhartoideae; Oryzeae; Oryza.
| + | * The osbc1l4 mutant exhibited a dwarf and less tiller phenotype. |
| − | |
| + | [[File:Os05g0386800-3.png|center|thumb|300px|'''Fig. 5 Phenotype of the OsBC1L4 and OsBC1L5 inserted lines.''' '' <ref name="ref1" />.'']] |
| − | Chromosome = [[:category:Japonica Chromosome 5|Chromosome 5]]|
| + | |
| − | AP = Chromosome 5:18728123..18731626|
| + | ===Expression === |
| − | CDS = 18728518..18728810,18728931..18729211,18729303..18729462,18729860..18730316,18730601..18730680<br>,18731266..18731368|
| + | * '''''OsBC1L3''''' and '''''OsBC1L4''''' have similar expression patterns, with highest levels in embryos and radicles after germination and culms 5 days before heading stage, respectively (Fig. 3d, e). |
| − | GCID = <gbrowseImage1>
| + | [[File:Os05g0386800-2.png|center|thumb|400px|'''Fig. 3 Parts of the expression patterns of the OsBC1L family members in 25 different tissues of Minghui 63 (O. sativa L. ssp. indica)''' '' <ref name="ref1" />.'']] |
| − | name=NC_008398:18728123..18731626
| + | |
| − | source=RiceChromosome05
| + | ===Evolution=== |
| − | preset=GeneLocation
| + | [[File:Os05g0386800-1.png|right|thumb|250px|'''Fig. 2 Phylogenetic analysis of the rice OsBC1L family members.''' '' <ref name="ref1" />.'']] |
| − | </gbrowseImage1>|
| + | * To study the evolutionary relationships of rice OsBC1Ls with all the COBRA-like proteins functionally characterized so far from other species, an unrooted tree was constructed by MEGA3.1. The results revealed that all OsBC1L proteins fell into two main subgroups(Fig. 2). |
| − | GSID = <gbrowseImage2>
| + | |
| − | name=NC_008398:18728123..18731626
| + | ==Labs working on this gene== |
| − | source=RiceChromosome05
| + | *X. Dai � C. You � L. Wang � G. Chen � Q. Zhang � C. Wu (&) National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, 430070 Wuhan, China |
| − | preset=GeneLocation
| + | *X. Dai � C. You � L. Wang � G. Chen � Q. Zhang � C. Wu National Center of Plant Gene Research (Wuhan), Huazhong Agricultural University, 430070 Wuhan, China |
| − | </gbrowseImage2>|
| + | ==References== |
| − | CDNA = <cdnaseq>atggcggtggggggagccgggagctccagatccgtggcgccgtgctgctgctgcgccgtgctgctcgcggcggcgctgctcttctccgcgccggccaccacagaggcttatgatgcgctggatccaaatggaaacatcacgataaaatgggacgttatgtcgtggactcctgatggctatgttgctgtggtcacgatgttcaactatcaacaattccggcacatccaggcacctgggtggcagctggggtggacatgggcaaagaaggaggtcatttggtcgatggttggagcacagaccactgagcagggcgattgctcaaagttcaagggtggcacgccccactgctgcaagaaggatcccacagttgttgatctgcttccgggcaccccatacaacatgcaaatcgctaattgctgcaaagctggagttataaatacatttaaccaggacccatcaaatgctgcttcttccttccagatcagtgtaggtcttgctgggactaccaacaagacagttaagttgcctaagaacttcactcttaaggccccaggtcctgggtacacgtgcgggcgtgctatgattgtcaggcctactaagtttttcaccggggatgggcgcagagcaacccaagctctaatgacatggaatgtgacctgcacatactcccaatttcttgctcagaagactccttcctgctgtgtatctctctcatcattttataatgacacaattgtgaactgcccaacatgctcttgtggctgccaaaacaatgggacaagtcctggaagctgtgtaaatgagaattcaccttatttacaatctgccattgatggccctggcaaatggaccggtcagcctcttgtccaatgtacttctcacatgtgcccgatcagaatccactggcatgtgaaactcaactataaggaatattggagagtgaagatcacgattacgaacttcaactaccgcatgaattacacacagtggaatttggtcgctcaacatcctaacttcaataatatcacccagctgtttagcttcaactacaagccacttactccatatggaagcaagataaatgatactgcgatgttctggggagttaagttctataacgatttgctcatgcaagctggtccacttggaaatgcacagtcagaacttcttctgcgtaaggattccaaggacttcacctttgacaagggatgggccttcccacaccgcgtgtacttcaatggtgataattgtgtcatgccacctccggatgcatatccatggttgcctaatgcaagtcctctgacaaaacaaccattgacactctcggttttggtattttcgattgtgttggctactttgctggcttatgcatga</cdnaseq>|
| + | <references> |
| − | AA = <aaseq>MAVGGAGSSRSVAPCCCCAVLLAAALLFSAPATTEAYDALDPNG NITIKWDVMSWTPDGYVAVVTMFNYQQFRHIQAPGWQLGWTWAKKEVIWSMVGAQTTE QGDCSKFKGGTPHCCKKDPTVVDLLPGTPYNMQIANCCKAGVINTFNQDPSNAASSFQ ISVGLAGTTNKTVKLPKNFTLKAPGPGYTCGRAMIVRPTKFFTGDGRRATQALMTWNV TCTYSQFLAQKTPSCCVSLSSFYNDTIVNCPTCSCGCQNNGTSPGSCVNENSPYLQSA IDGPGKWTGQPLVQCTSHMCPIRIHWHVKLNYKEYWRVKITITNFNYRMNYTQWNLVA QHPNFNNITQLFSFNYKPLTPYGSKINDTAMFWGVKFYNDLLMQAGPLGNAQSELLLR KDSKDFTFDKGWAFPHRVYFNGDNCVMPPPDAYPWLPNASPLTKQPLTLSVLVFSIVL ATLLAYA</aaseq>|
| + | * <ref name="ref1"> |
| − | DNA = <dnaseqindica>2817..3109#2416..2696#2165..2324#1311..1767#947..1026#259..361#gccttgcctggcggttggcgcgtcgcatctacccctgctactagtagtaccacttctcgcggcgagaaaatgccgcaatatatttgcttccaccgaggcgcagagcggaggagagtgacgagctgacgcacgcggcgcggcggaccagctcaatttgcctgccgctcctcgtcttccggtggggcggaggagggggacgccgggcgggcgggcgctcgcattccggagcggggagcgcgagctcgatcgggcggggatatggcggtggggggagccgggagctccagatccgtggcgccgtgctgctgctgcgccgtgctgctcgcggcggcgctgctcttctccgcgccggccaccacaggtttccccggctctcgctccttctctctctctctctctgtttgcgcctgccagctcgtgccgtgccggtctcagatccatgcgccggcccgatcgccgaggctctcgactaactttcacgagttgtgaccacgagatttgggcaatgcgatcccctcctgactgtgtcggtggctccagttcggtgtgtcggtggctttttttttttttttgaattccgattcgtttcatcagtaattcagttcgtttcgctcctgcttttgccagaattcttggagcagattaggtagcagtaattcagttcgtttcgctcccgcttgaccggattcttggatcaggttaggtagcttagatccattgagaggagcacgcatggagcttccttcccacactaatcagtgcccaaggtgatagatctgatcaggagaggcgaattcgaaaaaaaattcccttccagatcgaaatcgggatcacgatataactaactcatggggcttattcatctgccgaactgctaatttacccccatttcgtttcccttgttcaggatcttgatatgcaactcttttttgttttcctcttgcagaggcttatgatgcgctggatccaaatggaaacatcacgataaaatgggacgttatgtcgtggactcctgatggctatgttgtaagtagcaaccccacaccaaaaaatgcatcttgtattgttcgttcaaaaaaatccatctgcatcttgtttccccaactattattaggccataattttattttatttgatactactacaagttgtctttgaagtacaaagttgatagcataaccagcagctggtcagaaacatatgcagcaattaacaataataaacacgagttttatgtcagcatattatggatactctgattatcttgtatatgtgtgtcatgatttccccccaaaatgtttcttgtgcaggctgtggtcacgatgttcaactatcaacaattccggcacatccaggcacctgggtggcagctggggtggacatgggcaaagaaggaggtcatttggtcgatggttggagcacagaccactgagcagggcgattgctcaaagttcaagggtggcacgccccactgctgcaagaaggatcccacagttgttgatctgcttccgggcaccccatacaacatgcaaatcgctaattgctgcaaagctggagttataaatacatttaaccaggacccatcaaatgctgcttcttccttccagatcagtgtaggtcttgctgggactaccaacaagacagttaagttgcctaagaacttcactcttaaggccccaggtcctgggtacacgtgcgggcgtgctatgattgtcaggcctactaagtttttcaccggggatgggcgcagagcaacccaagctctaagtaagtagctcatctgttgttctttaatgtttaataccaattgctttcattctttgaggaaatgcatttgcagcctaaacaacaattgcatggttgaactaggttaccttatgtgtagggttagtaagaagatgtaatctgttgaagggaaagagattgttctcaaagtgagatgagtccaactgtgaataatagttgataataggttatattacttggcatgttggcctaatagaatacagctaattcagttaatattattctctagcaaataatattcgtcaaatgcagacatgcatcatagtggctccatatagaagttaaatttgtcaaaatcttataccataaagttcatttttgttttttgtttcttaacaaaaataaaatctgtttgcagtgacatggaatgtgacctgcacatactcccaatttcttgctcagaagactccttcctgctgtgtatctctctcatcattttataatgacacaattgtgaactgcccaacatgctcttgtggctgccaaaacaatgggacaagtcctggaagctgtgtaaagtgagttaataaaaccaaaactcttacttcgcttcttgttgaggcccaacttttctgcaaaattgctaacaagttccatgcatttccacagtgagaattcaccttatttacaatctgccattgatggccctggcaaatggaccggtcagcctcttgtccaatgtacttctcacatgtgcccgatcagaatccactggcatgtgaaactcaactataaggaatattggagagtgaagatcacgattacgaacttcaactaccgcatgaattacacacagtggaatttggtcgctcaacatcctaacttcaataatatcacccagctgtttagcttcaactacaagccacttactccatatggaagcaagataagtaagtcaatttacaaactgttctcctttatttaagaaaattggagtgcacttgtaatacgttcctttatctctctctctctctctctttctctgatgaagtttattccttctattttagatgatactgcgatgttctggggagttaagttctataacgatttgctcatgcaagctggtccacttggaaatgcacagtcagaacttcttctgcgtaaggattccaaggacttcacctttgacaagggatgggccttcccacaccgcgtgtacttcaatggtgataattgtgtcatgccacctccggatgcatatccatggttgcctaatgcaagtcctctgacaaaacaaccattgacactctcggttttggtattttcgattgtgttggctactttgctggcttatgcatgatgagtgaaaccaagaaattcggtgagcttcaagttgtcaggttccatggtgtgcactgcaacagatcatttgttcattcagttccacggttgcatagaagagaagatgtcacgctgaggaaagctgatatgtgtgtgtgtgttgtatgttaaaagaaggccaaaatgtatttcttttttggtatatatactggccacagcattttggtgaacttagttactgcaaactagataattacagttgcaccttttgtatgttatagcaaccagaaattcaattgaattatatgacttcccttcttgtagtacatgtatagactccgtaataatgttctgtatgattttgtgaacagaaaggatgctgttgattgagatcatttagttttgtttcttgtt</dnaseqindica>|
| + | Dai X, You C, Wang L, Chen G, Zhang Q, Wu C. Molecular characterization, |
| − | Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001061954.1 RefSeq:Os05g0386800]|
| + | expression pattern, and function analysis of the OsBC1L family in rice. Plant Mol |
| − | }}
| + | Biol. 2009 Nov;71(4-5):469-81. doi: 10.1007/s11103-009-9537-3. Epub 2009 Aug 18. |
| − | [[Category:Genes]] | + | PubMed PMID: 19688299. |
| − | [[Category:Japonica mRNA]]
| + | |
| − | [[Category:Oryza Sativa Japonica Group]] | + | </ref> |
| − | [[Category:Japonica Genes]]
| + | </references> |
| − | [[Category:Japonica Chromosome 5]] | + | |
| − | [[Category:Chromosome 5]]
| + | |
| | + | ==Structured Information== |
| | + | [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 5]] |
