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| − | {{JaponicaGene|
| + | The rice '''''Os10g0494800''''' was reported as '''''OsKTN80a''''' in 2014 <ref name="ref1" /> by researchers from China. |
| − | GeneName = Os10g0494800|
| |
| − | Description = Similar to Katanin p80 WD40-containing subunit B1 (Katanin p80 subunit B1) (p80 katanin)|
| |
| − | Version = NM_001071481.1 GI:115482705 GeneID:4348995|
| |
| − | Length = 7072 bp|
| |
| − | Definition = Oryza sativa Japonica Group Os10g0494800, complete gene.|
| |
| − | Source = Oryza sativa Japonica Group
| |
| | | | |
| − | ORGANISM Oryza sativa Japonica Group
| + | ==Annotated Information== |
| − | Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
| + | [[File:95-Os10g0494800.png|right|thumb|427px|'''Figure 6.''' ''Comparison of the cell division process between wild type (WT) and KTN80a‐OX plants.<ref name="ref1" />.'']] |
| − | Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
| + | ===Gene Symbol=== |
| − | clade; Ehrhartoideae; Oryzeae; Oryza.
| + | *'''''Os10g0494800''''' '''''<=>''''' '''''OsKTN80a,KTN80a''''' |
| − | |
| + | ===Function=== |
| − | Chromosome = [[:category:Japonica Chromosome 10|Chromosome 10]]|
| + | * Katanin, a microtubule‐severing enzyme, consists of two subunits: the catalytic subunit P60, and the regulatory subunit P80. |
| − | AP = Chromosome 10:19255999..19263070|
| + | * In several species, P80 functions in meiotic spindle organization, the flagella biogenesis, the neuronal development, and the male gamete production. |
| − | CDS = 19256186..19256264,19256372..19256440,19256549..19256665,19256735..19256850,19256931..19257005<br>,19257087..19257212,19257312..19257373,19257450..19258388,19258505..19258628<br>,19258699..19258842,19258933..19259007,19259141..19259164,19259807..19259877<br>,19260087..19260189,19260337..19260563,19260692..19260809,19260963..19261093<br>,19263008..19263035|
| + | * Overexpression of '''''OsKTN80a''''', a katanin P80 ortholog, caused the repressed cell elongation and stalled cell division mediated by microtubule apparatus defects in primary root in Oryza sativa. |
| − | GCID = <gbrowseImage1>
| + | * '''''OsKTN80a''''', possibly associated with '''''OsKTN60''''', is involved in root growth via regulating the cell elongation and division. |
| − | name=NC_008403:19255999..19263070
| + | * '''''OsKTN80a''''' acts as a microtubule stabilizer |
| − | source=RiceChromosome10
| + | * '''''KTN80a''''' functions in cell expansion |
| − | preset=GeneLocation
| + | |
| − | </gbrowseImage1>|
| + | ===Phenotypic analysis=== |
| − | GSID = <gbrowseImage2>
| + | * As shown in Figure 6A–C, E–G, all of the microtubule configurations and the corresponding dimensions before telophase are fundamentally normal in KTN80a overexpressed plants when compared with the WT (Table 2). However, in cytokinesis, the daughter nuclei distance is dominantly shorter in transgenic plants than in WT (Figure 6D, H). |
| − | name=NC_008403:19255999..19263070
| + | * By contrast to the daughter nuclei distance, the phragmoplast length is longer, compared with the WT, by overexpression of KTN80a, yet the configuration of most phragmoplasts is somehow normal (Figure 6D, H). |
| − | source=RiceChromosome10
| + | |
| − | preset=GeneLocation
| + | ==Labs working on this gene== |
| − | </gbrowseImage2>| | + | * State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan 430072, China. |
| − | CDNA = <cdnaseq>atggccaccaagcgcgcgtacaagctccaggagtttgttgcgcatgcttccgatgtcaactgtgtcaagtttgggaggaagacatcaagaatcctcatcactggtggggaggaccaaaaggtcaatctttgggccatagggaaacccagttccatcttgagcctgtcaggccttacgagtccagttgagtcagtgagctttgactcatctgaagctatgataggtgctggagcatcaagtgggacaataaagatatgggatgtagatgaagcaaaagtcgttcgtacttttactggacatagatcgagttgtgcgtcccttgatttccatccttttggagaattcttcgcttctgggtcttcagacactaacatgaaaatatgggatatgcggaaaaagggatgcattcacacatataaaggtcacacacggcggattgatgtgcttagattcactcctgatggccggtggattgtctctggtggatctgataactctgtaaagatctgggatttgacagctggaaagctcttgcatgactttaggaatcatgaaggcccaattaactgcttagattttcacccccatgagttcttattggctacaggttcagctgataagacagttaagttttgggaccttgaaacttttgagttgattggttcttctggacctgagaatagccgggaatactttgtgccagctagtgtagttcggtctatgacattcaacaaagatggtaaatcacttttttgcggattacatgaaagtttgaaggttctttcctgggaacccatcatatgccatgatgtggttgatgttggctggtccacattaggggatctaattgttcatgagggaaaacttcttggttgctcatataaccaaagttgtgctggaatatgggtcgtggacttgatgaaaattgaaccgtatgctgttagcattgctgaagcacatttgaatgaaagcgtaaataggtcaatacaggctgataatagcatatcatcagtgttgggaaggttatcagtttccagaagcccagccaaggaagcatcttccgatactttgcttaaactctcaatgtctgcttcaaaagaagttcctgttccagcttcttctgcagtgacaaagaaactaccaaaagaacctataacaagcaatattcggctcacaagatctgattctctaccagttgtttctcctagggttagattgaacccaaagttctctgatgaccagaagaggcagacagattatgctgtgcctataacaactccaagaattcgctccaaagtggatctctctataggtgctagagcattccatcgtaactcagtaccatcggttgctcccacaaatagatccaggtccaaaatatctgcatatagtagtgaaggatcgtcgttcatccctgttgttgtccctaggcatatccctaaagtggattctggtcccaatctcagtaaagttctcactactgatttaacaattgtcgagcctcaagacatagaacgaggtggtctggctgtggattgtggagaagatgataaattggtgtgtgtgattgattcaaggagctcaaatatgggtgtacaaaatggccgtagaagaaaagccggtgatattattacacataaagaaaccccagagactgctttgacagttaatatggatcgtgacttcagaagaaaggctcctgaaactgaaagtatgcaacaggacatatttcattcagagcccattagttcaaaatgtaaatatattaaagaaacttcaggtgctggagacattaacttgtctgggtcagccattactgaaagtgtcaagtctaatgaaggtggtgactggtataatgcatcttcttttgtaaaaccaaatttgactgttggaaggaatccagagacttcatacatcaacagaagaacaatgtttggattgagacattcaacggattcaagtgaaaaacacgctgttgaacatgggccttccaatttgtctgcaagttatgagagaaatcagtatgcaccaacactacataacttgaggaggcgctcttcggttgctagagaacagagtgcatcagctggtgatgaagatgatattgctgatctgatggaaaaccatcaagaattcattcatgcagtgaagtctcggctaacaaaactagaggtggtttacaggtgttggcacaataacgatgtaaagggatctattgatgctacacgcaggattcaggatcttgatgttaccgccgatataattagtgttctgatggagaatgataattctatcacactagatatttgtacttgtgtcttacctcttgcctccagtgttcttgaaaaaagcagctatgacaggcacctgaaagttgccttggagatgatccttaagcttgtgaaaagctttggttctacaatatcttcagctgtgtcatctactccaccagttggtgtagacattgaggcagaacagaggctcaatcggtgcaatttgtgctttctagagctgataaaagttcacagcgttctctttgccctgacacggcggcaaggcgaggttggaagatctgcacaggagctaagcctctttcttcaggatatctttcagctgacaagcagatag</cdnaseq>|
| + | |
| − | AA = <aaseq>MATKRAYKLQEFVAHASDVNCVKFGRKTSRILITGGEDQKVNLW AIGKPSSILSLSGLTSPVESVSFDSSEAMIGAGASSGTIKIWDVDEAKVVRTFTGHRS SCASLDFHPFGEFFASGSSDTNMKIWDMRKKGCIHTYKGHTRRIDVLRFTPDGRWIVS GGSDNSVKIWDLTAGKLLHDFRNHEGPINCLDFHPHEFLLATGSADKTVKFWDLETFE LIGSSGPENSREYFVPASVVRSMTFNKDGKSLFCGLHESLKVLSWEPIICHDVVDVGW STLGDLIVHEGKLLGCSYNQSCAGIWVVDLMKIEPYAVSIAEAHLNESVNRSIQADNS ISSVLGRLSVSRSPAKEASSDTLLKLSMSASKEVPVPASSAVTKKLPKEPITSNIRLT RSDSLPVVSPRVRLNPKFSDDQKRQTDYAVPITTPRIRSKVDLSIGARAFHRNSVPSV APTNRSRSKISAYSSEGSSFIPVVVPRHIPKVDSGPNLSKVLTTDLTIVEPQDIERGG LAVDCGEDDKLVCVIDSRSSNMGVQNGRRRKAGDIITHKETPETALTVNMDRDFRRKA PETESMQQDIFHSEPISSKCKYIKETSGAGDINLSGSAITESVKSNEGGDWYNASSFV KPNLTVGRNPETSYINRRTMFGLRHSTDSSEKHAVEHGPSNLSASYERNQYAPTLHNL RRRSSVAREQSASAGDEDDIADLMENHQEFIHAVKSRLTKLEVVYRCWHNNDVKGSID ATRRIQDLDVTADIISVLMENDNSITLDICTCVLPLASSVLEKSSYDRHLKVALEMIL KLVKSFGSTISSAVSSTPPVGVDIEAEQRLNRCNLCFLELIKVHSVLFALTRRQGEVG RSAQELSLFLQDIFQLTSR</aaseq>|
| + | ==References== |
| − | DNA = <dnaseqindica>6807..6885#6631..6699#6406..6522#6221..6336#6066..6140#5859..5984#5698..5759#4683..5621#4443..4566#4229..4372#4064..4138#3907..3930#3194..3264#2882..2984#2508..2734#2262..2379#1978..2108#36..63#atcgaagcttttcatgactgcagccatcgccgcagatggccaccaagcgcgcgtacaagctccgtatcctcgattcttcttgccgcttgaatcctcggtttgggagttttagattaaatttgagttctttttttgggtcgagttgttcttgccctgcctgcttatcgttgtatgtaatctaggtttctgatcgagttggggggagtccgcgtgtggtgatcggtttcgatctgcgctcatgttattttctttgtgctgttcttggtttgatgattgggtttatcgcggtacgctgctgggattgatttggtacgaattccaatgagatgagacgatttgagaccatgtgaactctactgttcagctctagcagatcttccttttgtatgcgtgtgcaagtattatgtagttctctgcttaaagccagactaaattttgctgttttttttttttgccggaatgaccgaaggaggtcattcaatgtaattaagacggaagaaaagattacaagaaaagttttacatcgacagttggctgtcgagaaaggatgtgcaccagagcacacgccccgaaccatgtgccaaccgcctaaacacacgctacagagagggaagtccgttacccaatccgaatccaccatctgaacatcggcggcacatggcttccgccacacccgaactgacgcccctccgtcggccgacttcatcgaaccaccatccctgagagctgacccaggacccctccgttcaaccacccaccggcctcctcgccagatctggccgaaggagaacctgggactaggtggcattgcttcagcagcctgagcttcccccactgacaagctgccgcctcaatccagcttagaaactccccacaaagaaggggaggagctctaggaagggcgagggtgccgatcgacaacgaggaaaacgaccaaccgccgccaactccctttgcattgccatctgggcctgcaccaatgccagaaacgctgccgctccggctccggtgccacccgccggcgccccctttgtccggcctccttgccccacctagccgtgccgcgccgctactggccgctaagggcaccgcggcagcccagctgcccgaccgtcgaggcctagccacgccatagggcccggcggcagcgaaggcagaggcgggggcgggggaggcggcagggtgttgaccagcttccgccgccgctcccaaccgccgccgccgccgccgcacggttcggccgcacgccgccgccatgcacctcgacggcatccgcatccgcgtccaggccggcaccgccgccacgcaaccggagccgccaccgccgccgagctgccaccgtcgccgagccgcgacagcgccgccgaggcgccaccgccgcccctagccgcctcgcgccgagattcaggcgaggatggccggatccggacttggggactccggatccgccgcctccccgcaccgccccaacatcgacgtcgccaactccgaccgcggtgggggtcttcgtttgttttagttcgagagaataaagactattattagtgaagttttatttcaaaaataaatattagttagagcattgagttgtcatcttacaaaaattgactcctgtattatcttctgcttggatagtttctgctgcaaataggatcacactagggtcagatgctgacacttaccatgagaaaaaattggatggatgaattaatcaatacaaaatcttcaaatatttattatgtgtagctcttttctttaagaatttagatggtgagatatcatggataatacattcactgaaatgaacatggtttaacccgaaaagcattgttatgtcagtaaattgcgttaccttgttgaaatgtatattttgaaatacccttccaaaaaagtgattttctgaagcaacactgaaaattgcccaaatgccaaatggtaatctacaacagccaaccatgtttccttgacaatggccagaggagtttgttgcgcatgcttccgatgtcaactgtgtcaagtttgggaggaagacatcaagaatcctcatcactggtggggaggaccaaaaggtcaatctttgggccatagggaaacccagttccatcttggtaatattccactggcctctgaaaggtcaatcgttcatgtgtaatacttcttttttttcttccttgtctttgttactcagttttatggggtctttattagtcagtttgaaagttacatctcttcttacaagttaatgtcactatgaattgcagagcctgtcaggccttacgagtccagttgagtcagtgagctttgactcatctgaagctatgataggtgctggagcatcaagtgggacaataaagatatgggatgtagatgaagcaaaaggtacgaactaatatggataacaatttgctgcattattcatttaaagaaacacttcgctgcatttaaaccgaagtataaactgtagttgtatcacacaactataactttgttaatttttttttgctcagtcgttcgtacttttactggacatagatcgagttgtgcgtcccttgatttccatccttttggagaattcttcgcttctgggtcttcagacactaacatgaaaatatgggatatgcggaaaaagggatgcattcacacatataaaggtcacacacggcggattgatgtgcttagattcactcctgatggccggtggattgtctctggtggatctgataactctgtaaaggtacaattctgaatatgtctattaatacaaggcaaacacaatcacagcactggaaaagaaataacatgctatgctgattattcgaaccattaagctgtcatatgtatctctcgggtcactgaaattgttttctgatcatcttgctagatctgggatttgacagctggaaagctcttgcatgactttaggaatcatgaaggcccaattaactgcttagattttcacccccatgagttcttattggctacaggttagatagatgatcctttattataacacttgtagtagatgcattcactgtagtgtactagctggcagtttgatgacatgttttcctccaaaattatgctattatgaatattattatttctggcatggatcattgttgactgatgcttatttgtgtcatctagacttgacagcctatacattgctttcttgtttcaaaaatatttgcaggttcagctgataagacagttaagttttgggaccttgaaacttttgagttgattggttcttctggacctgaggtattgaatatattaattgttgtatatcttaaagcaattcaagttaatgttcagagtttgagccaatttagatctataaataccatcgctatgtagcgctctgtcatactatctcctatatatgagggtctcatgtaagtgttagatacatgtcatcatgttcttggcttcaaagagattcaattaaaaccaagttccagtaatctatttaagtttatggtaattctgcctaaacctggtcctttaaaaggggataaaagaacacagcaagtcaacattaagcagtacttctgtgcatatttggagtcactaaatggtaagatatcaatctgaccagtgattcaggcatccagcatgtcaaaccaaatgatataatcatacctgaaattctctctctgcaaatagctttcaagagcttatataatttaatattcatttatgcaaaacgatatgtcagttcaagtttttacccacgttccttaatttgtacctttggaccctaatgttttgtcagttagataatacatacccatccttaaagaaaagattgattgtaccttgagctataccatgagttatttcaatctccgctccttatcttcttgtttcgtggatgtaactaatatattctgtttcttgcagaatagccgggaatactttgtgccagtacgttgatccttaatccattctatctatatttttctactcaaatggatggcagtgctttctgtctacaaagttctcgatgtaaatgaaataatcaatacttatcttatctgcatgtactcttaattttcaggctagtgtagttcggtctatgacattcaacaaagatggtaaatcacttttttgcggattacatgaaagtttgaaggtaactgctctgttggactgtcgatatcctctgaagctttggaaaatgacctcacaacagattttatttatttattttttttacctgtaggttctttcctgggaacccatcatatgccatgatgtggttgatgttggctggtccacattaggggatctaattgttcatgagggaaaacttcttggttgctcatataaccaaagttgtgctggaatatgggtcgtggacttgatggtatggttctacactatttactttgttaccaattgggcagttctgatatgttacttatcccaaatttcagaaaattgaaccgtatgctgttagcattgctgaagcacatttgaatgaaagcgtaaataggtcaatacaggctgataatagcatatcatcagtgttgggaaggttatcagtttccagaagcccaggtaaacaattatcatttggcgtataacatcaatataatttttcttcatccattatccttgagttatgattcttcaccctaaaactatgtatattttgctatttctcgaaaccgcagccaaggaagcatcttccgatactttgcttaaactctcaatgtctgcttcaaaagaagttcctgttccagcttcttctgcagtgacaaagaaactaccaaaagaacctataacaagcaatattcggctcacaagatctgattctctaccagttgtttctcctagggttagattgaacccaaagttctctgatgaccagaagaggcagacagattatgctgtgcctataacaactccaagaattcgctccaaagtggatctctctataggtgctagagcattccatcgtaactcagtaccatcggttgctcccacaaatagatccaggtccaaaatatctgcatatagtagtgaaggatcgtcgttcatccctgttgttgtccctaggcatatccctaaagtggattctggtcccaatctcagtaaagttctcactactgatttaacaattgtcgagcctcaagacatagaacgaggtggtctggctgtggattgtggagaagatgataaattggtgtgtgtgattgattcaaggagctcaaatatgggtgtacaaaatggccgtagaagaaaagccggtgatattattacacataaagaaaccccagagactgctttgacagttaatatggatcgtgacttcagaagaaaggctcctgaaactgaaagtatgcaacaggacatatttcattcagagcccattagttcaaaatgtaaatatattaaagaaacttcaggtgctggagacattaacttgtctgggtcagccattactgaaagtgtcaagtctaatgaaggtggtgactggtataatgcatcttcttttgtaaaaccaaatttgactgttggaaggaatccagagacttcatacatcaacagaagaacaatgtttggattgagacattcaacggattcaagtgaaaaacacgctgttgaacatggtaagtgttcaaaccgatatgttattatttctctttgtttcccttcaacttaccttgctctttgttgggaggacagggccttccaatttgtctgcaagttatgagagaaatcagtatgcaccaacactacataacttggtatgcatactccaaatttccagattatgtcattcacgatgtatttattcttatgttggtaccaaatccatgttatgccctaccttattgtttctgcagaggaggcgctcttcggttgctagagaacagagtgcatcagctggtgatgaagatgatattgctgatctgatggaaaaccatcaagaattcattcatgcagtgaagtctcggctaacaaaactagaggttataacgagtatggtcatctatagcatctgctattttgagatacctcgagtaacggtaatctcaatgtgttatgtgtaggtggtttacaggtgttggcacaataacgatgtaaagggatctattgatgctacacgcaggattcaggatcttgatgtgtgtacttcttaattaccatcctgttctgttgaagttccatccattataatgtctgatgagttctaccacttttacaggttaccgccgatataattagtgttctgatggagaatgataattctatcacactagatatttgtacttgtgtcttacctcttgcctccagtgttcttgaaaaaagcagctatgacaggtacttttccttgaatatattcttgtagcatttctcttagtaagtatgcattgacatctcctattgcaggcacctgaaagttgccttggagatgatccttaagcttgtgaaaagctttggttctacaatatcttcagctgtgtcatctactccaccagttggtgtagacattgaggcagaacagaggtaacctttcttgcctctcattttcattgcatctaaatacattgctgaggcttcatgtacattacaatggttcaattcacacatgtgaatttgttgctactttgctaggctcaatcggtgcaatttgtgctttctagagctgataaaagttcacagcgttctctttgccctgacacggtaaattcttggtttagcttcaaaaaggcattgctttgagattctgaaagtctcattggcgattcaaagaactaaaaatcgattcatttgtgcatcctgttctataggcggcaaggcgaggttggaagatctgcacaggagctaagcctctttcttcaggatatctttcagctgacaagcagatagatgatatgatagccatacggcgatatttcgcccaaatactcatcttttttccttggaacagatagacagctatagagaaagatatagataggaaacatacaggtcatccttggcaaatgtacagcaaattcttgtaccatccggtttgcaatcaaatactagtcaacaaaaattcaaaaatctctgc</dnaseqindica>|
| + | <references> |
| − | Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001071481.1 RefSeq:Os10g0494800]|
| + | * <ref name="ref1"> |
| − | }}
| + | Wan L, Wang X, Li S, Hu J, Huang W, Zhu Y. Overexpression of OsKTN80a, a |
| − | [[Category:Genes]] | + | katanin P80 ortholog, caused the repressed cell elongation and stalled cell |
| − | [[Category:Japonica mRNA]]
| + | division mediated by microtubule apparatus defects in primary root in Oryza |
| − | [[Category:Oryza Sativa Japonica Group]] | + | sativa. J Integr Plant Biol. 2014 Jul;56(7):622-34. doi: 10.1111/jipb.12170. Epub |
| − | [[Category:Japonica Genes]]
| + | 2014 Mar 25. PubMed PMID: 24450597. |
| − | [[Category:Japonica Chromosome 10]] | + | </ref> |
| − | [[Category:Chromosome 10]]
| + | </references> |
| | + | |
| | + | ==Structured Information== |
| | + | [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 10]] |
