Difference between revisions of "Os05g0375400"

From RiceWiki
Jump to: navigation, search
(Created page with "{{JaponicaGene| GeneName = Os05g0375400| Description = Beta-glucanase precursor| Version = NM_001061912.1 GI:115463554 GeneID:4338611| Length = 4757 bp| Definition = Oryz...")
 
 
(2 intermediate revisions by 2 users not shown)
Line 1: Line 1:
{{JaponicaGene|
+
The rice Os05g0375400 was reported as '''''Gns1''''' <ref name="ref1"/> in 2003 by researchers from National Institute of Agrobiological Sciences in Japan.  
GeneName = Os05g0375400|
 
Description = Beta-glucanase precursor|
 
Version = NM_001061912.1 GI:115463554 GeneID:4338611|
 
Length = 4757 bp|
 
Definition = Oryza sativa Japonica Group Os05g0375400, complete gene.|
 
Source = Oryza sativa Japonica Group
 
  
  ORGANISM  Oryza sativa Japonica Group
+
==Annotated Information==
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
+
===Function===
            Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
+
Please input function information here.
            clade; Ehrhartoideae; Oryzeae; Oryza.
+
 
|
+
===Expression===
Chromosome = [[:category:Japonica Chromosome 5|Chromosome 5]]|
+
Please input expression information here.
AP = Chromosome 5:18113041..18117797|
+
 
CDS = 18113511..18114442,18117595..18117667|
+
===Evolution===
GCID = <gbrowseImage1>
+
Please input evolution information here.
name=NC_008398:18113041..18117797
+
 
source=RiceChromosome05
+
You can also add sub-section(s) at will.
preset=GeneLocation
+
 
</gbrowseImage1>|
+
==Labs working on this gene==
GSID = <gbrowseImage2>
+
*National Institute of Agrobiological Sciences, Kannondai 2-1-2, Tsukuba 305-8602, Japan.
name=NC_008398:18113041..18117797
+
 
source=RiceChromosome05
+
==References==
preset=GeneLocation
+
<references>
</gbrowseImage2>|
+
* <ref name="ref1">
CDNA = <cdnaseq>atggctagccaaggtgtagcctccatgttcgctctcgcattgctcctcggtgcctttgcctccattcctcaaaaggcggaggcgatcggggtgtgctacggcatgagcgcgaacaacctgccgccggcgagctcggtggtggggatgtaccgctccaacggcatcacgtcgatgcggctgtacgcgccggaccaggcggcgctgcagtcggtgggcggcacggggatcagcgtcgtcgtcggcgcgcccaacgacgtgctctccaacctcgccgccagccccgccgcggcggcgtcgtgggtgcggaacaacatccaggcctacccgtcggtgtcgttccggtacgtcgccgtcgggaacgaggtcgccggcggcgccacgtccagcctggtcccggccatggagaacgtccgcggcgcgctggtgtcggcggggctgggccacatcaaggtgacgacgtcggtgtcgcaggcgctcctcgccgtgtacagcccgccgtccgccgcggagttcaccggcgagtcgcaggcgttcatggcgcccgtcctgagcttcctcgcccgcaccggcgcgccgctgctcgccaacatctacccctacttctcctacacctacagccagggcagcgtcgacgtctcctacgcgctcttcaccgccgccggcaccgtcgtccaggacggcgcctacgggtaccagaacctgttcgacaccaccgtcgacgcgttctacgccgccatggccaagcacggcggctccggcgtctccctcgtcgtctccgagacaggctggccctccgccggcggcatgtccgcctcgccggccaacgcccggatctacaaccagaacctcatcaaccacgtcggccgcggcacgccgcgccaccccggcgccatcgagacctacgtcttctccatgttcaacgagaaccagaaggacgccggcgtcgagcagaattggggcctcttctaccccaacatgcagcacgtctaccccatcagcttctga</cdnaseq>|
+
Nishizawa Y, Saruta M, Nakazono K, Nishio Z, Soma M, Yoshida T, Nakajima E, Hibi T. Characterization of transgenic rice plants over-expressing the stress-inducible beta-glucanase gene Gns1. Plant Mol Biol. 2003 Jan;51(1):143-52. PubMed PMID: 12602898.  
AA = <aaseq>MASQGVASMFALALLLGAFASIPQKAEAIGVCYGMSANNLPPAS                    SVVGMYRSNGITSMRLYAPDQAALQSVGGTGISVVVGAPNDVLSNLAASPAAAASWVR                    NNIQAYPSVSFRYVAVGNEVAGGATSSLVPAMENVRGALVSAGLGHIKVTTSVSQALL                    AVYSPPSAAEFTGESQAFMAPVLSFLARTGAPLLANIYPYFSYTYSQGSVDVSYALFT                    AAGTVVQDGAYGYQNLFDTTVDAFYAAMAKHGGSGVSLVVSETGWPSAGGMSASPANA                    RIYNQNLINHVGRGTPRHPGAIETYVFSMFNENQKDAGVEQNWGLFYPNMQHVYPISF                    </aaseq>|
+
</ref>
DNA = <dnaseqindica>3356..4287#131..203#accaacgaaacaaggagagactcagagaggaggcgtgttggttagctcattggcagcagcacacacaaaccacatctcctatatatagctcatttttagcttttggaatttgagagaggttttgagagaaatggctagccaaggtgtagcctccatgttcgctctcgcattgctcctcggtgcctttgcctccattcctcaaagtgattacctttccctctctttccttttctttttctctctctatctctcttttgtgtttttttttttcgatttgttgcatgtttggaaaatcattaggtatatataagttttagtttagttcatgcactcgctcacgatgcagagtctggggtttaattttattctattaccaaaaaaaggttttgtttacgcacgtcatgcatggtgtgtggatagattgcaaaaagttaatgattaatttcttgggagacagagaaagatgaagagattataattggtagaaatgggctagctaaatagagatagctagctaacaaataatacacacagtggtcaagagtcacatagatatacatcaattttcatcaacaacgtcatgcggaaaagagagataacaactctcgttagcgagtcatctcgttaaacgcctccccctgcagtttcggtgcctgtcgctctcactgcgagtttaattattctcttctgctgcttaattgctgctgctgctgctgctgctgaaagaaggttaattaagctcgtctcgtgccgtctcattctgcccatcactcacacgcatcgtcgtcttcgtctatgggaccagtaaaaacctcgcatcaatcactttcgttaaaagatcaggaaacctcaattttgactgatcttctctgatgactcacctctctgaatttttgcttatcgagagtcgttctctcaaagatatatctatcctttttgagtggtggcacctcaccaaaacaaaagtgcatatatatatatgtctgaagaatatagtataattgactgcagtttaattaacaagaaaaattactgcgagtagtaattaatttctgcaagcaagcatatatagtatcttgggagcatgccgaaagggatgtttctagctagctagcagctagcttttagaggcacatttcgtacacaaattaactaacaatcttgcagatgaagtctttgcatgtttggtgcatgcatgcatgtcatctcacagttgcttgcatcttttggaactttagaatgtttcaacacataacctagctttatatctttctttctttctatctctcatcagtagtcatgttaggctaagaattcagctactggagatagcctttttgtttttgacattcatgaaagttaattcaatttatcaagtgctatctctctcacaaatataagcttttctatctctctcttgatccctaccgcttcgtttgttcccttattgattcggttgcaacaactgcttaaccaccccctaacccaacaccacaccatatctcattatctgtcgtctttagttttctctctctagatatatatatatctatcgcttgacatttttcaaatgatgcatgatattgtacctgcccagtccaatggtcctccaggttgacacaaactcccatatcttgtaccaacactgttccattctttaagtaagatatatgcatgttgtactagctagtaactaactcactcactcactaacaatatctaatgatggatatatactactaaatagtgtactacatattatagctattagtcttgttctaacacaaatattgacacatatagtgcaactaaactgtaaagagagtagtagtaaacacatggcacatccatgatcaccagtagtcagaaattaattagttaggacaggtgttgcttatgttgtcctaaagcatgttatgacctgacaaattggagcaattagtaagttgtaggggtgtgcttcatttaattggacatgtacgtttcttgagtagttgcatattactccactgcactcactgactattagcacacgggtggtctaaactaagcttcagctaaagcttattagatgctgctttgttagttagctagctagcttcccctttggccacatcgaccttacgtggactatccaacggtcatgctgctgacgttggaccaaaccattacatctccatctctctctctctctctctctctttcaatttctctatctcattttttctctctcaatttctctatgtttcttgggtagtatattccttgtccatctccgaaattagctgacaagtggcgtgcaagtacatgctatttgttgtaggataaacacttgatagctttccaaagtcaaaaaaaaaaattgcatcaagagctatagctagatgccgtgatcaggggagagttttcaactattagacctaattttcagggttaggtagtagagtgagattgctagctagtaagagattaatccacttagggtcaaaagcttatcccgttgtttaaggttatccttggtcacgagctagcttattagcatacttgttaaagttattacacactttagacacgtctttagtcacgagtgacaactaggtcaagctagagaagcaggaaacctgcagcattcaagcaactaagcaagaagcaaatatatattattcctcgtcagtgtgcgtgcacttgacaccaacttaatcagtataatatttttcagtaaaacaaagctaaaaacatcccatttttgtctgccagtagtagagtctagagaaagagagagaagcacaaaaaaaatatgcaaattaaatcaagctagtccaagcgcgcatacaaatttcagttaaatgtctttttcttgagattaagattaaaatttaaattattattcatcgaaaaaataataagtcaaaaaaaggatgtgtatgtatttgtacttcttcaatagtagtacatgcatcgcattctgtcacttttctacactactctccggccgccctttcttgctatgtgtacccatttcccgatttaaaacgagattaatattaaacagtaatacatgtacacccatgcactactgttcattaacagtaactaaacataaaaacataattatttacagctctataaattagttatttttttaataatagaatagaatcccagcctttactcaatgagctacaaccaattacggagtattatataagtccgtactagacaaacgcacataaacaagtcttaaaatgcacatcgaaaaaaataaagcaaccacaagcttagtaatagttaattaattgctgtaaataattaaagtaataaaaaattttactaacgtgatatgatggtgatgcagaggcggaggcgatcggggtgtgctacggcatgagcgcgaacaacctgccgccggcgagctcggtggtggggatgtaccgctccaacggcatcacgtcgatgcggctgtacgcgccggaccaggcggcgctgcagtcggtgggcggcacggggatcagcgtcgtcgtcggcgcgcccaacgacgtgctctccaacctcgccgccagccccgccgcggcggcgtcgtgggtgcggaacaacatccaggcctacccgtcggtgtcgttccggtacgtcgccgtcgggaacgaggtcgccggcggcgccacgtccagcctggtcccggccatggagaacgtccgcggcgcgctggtgtcggcggggctgggccacatcaaggtgacgacgtcggtgtcgcaggcgctcctcgccgtgtacagcccgccgtccgccgcggagttcaccggcgagtcgcaggcgttcatggcgcccgtcctgagcttcctcgcccgcaccggcgcgccgctgctcgccaacatctacccctacttctcctacacctacagccagggcagcgtcgacgtctcctacgcgctcttcaccgccgccggcaccgtcgtccaggacggcgcctacgggtaccagaacctgttcgacaccaccgtcgacgcgttctacgccgccatggccaagcacggcggctccggcgtctccctcgtcgtctccgagacaggctggccctccgccggcggcatgtccgcctcgccggccaacgcccggatctacaaccagaacctcatcaaccacgtcggccgcggcacgccgcgccaccccggcgccatcgagacctacgtcttctccatgttcaacgagaaccagaaggacgccggcgtcgagcagaattggggcctcttctaccccaacatgcagcacgtctaccccatcagcttctgatgcattccgtacacatatacgcatacgtatgcgtatacgtgaccgcaggtagtgtagtatacacgtacacgtacctgtacattacagtattgtacagagggcttggcttgcgaccgctgagaggacacgtacaccaagtgtacgtctgtcagatgcgtacgcgatagtatatatattgggtatattatatatataccgtattattacggtatgtatagaagggaagctacaggtacaaaatacggtacgctgtggtaggcgaattagcccccattttcccttcctagattactattactatatagagagggttgcaatatatatacatgtatatgtacgtacttaggaggtgtattttgtacgtacacagattgtaatactgtacatttgtacgccgtacgtcgaggtattttgcctcacgtaggcgtttgagaaaaaaaaagaaaaaatttaaaagattttactgctgc</dnaseqindica>|
+
</references>
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001061912.1 RefSeq:Os05g0375400]|
+
==Structured Information==
}}
+
    [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 5]]
[[Category:Genes]]
 
[[Category:Japonica mRNA]]
 
[[Category:Oryza Sativa Japonica Group]]
 
[[Category:Japonica Genes]]
 
[[Category:Japonica Chromosome 5]]
 
[[Category:Chromosome 5]]
 

Latest revision as of 01:42, 17 October 2016

The rice Os05g0375400 was reported as Gns1 [1] in 2003 by researchers from National Institute of Agrobiological Sciences in Japan.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

  • National Institute of Agrobiological Sciences, Kannondai 2-1-2, Tsukuba 305-8602, Japan.

References

  1. Nishizawa Y, Saruta M, Nakazono K, Nishio Z, Soma M, Yoshida T, Nakajima E, Hibi T. Characterization of transgenic rice plants over-expressing the stress-inducible beta-glucanase gene Gns1. Plant Mol Biol. 2003 Jan;51(1):143-52. PubMed PMID: 12602898.

Structured Information