Difference between revisions of "Os06g0102100"

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Please input one-sentence summary here.
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The rice '''''Os06g0102100''''' was reported as '''''CYP93G2''''' in 2010 <ref name="ref1" /> by researchers from China.  
  
 
==Annotated Information==
 
==Annotated Information==
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[[File:99-Os06g0102100.png|right|thumb|327px|'''Figure 5.''' ''Analysis of the rice CYP93G2 T-DNA mutant<ref name="ref1" />.'']]
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===Gene Symbol===
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*'''''Os06g0102100''''' '''''<=>''''' '''''OsF2H,F2H''''','''''CYP93G2'''''
 
===Function===
 
===Function===
  Os06g01250 encoding the rice P450 CYP93G2 protein which is a functional flavanone 2-hydroxylase. In the trail of CYP93G2 protein expressed Saccharomyces cerevisiae,recombinant CYP93G2 Converts Flavanones to corresponding 2-Hydroxyflavanones.Furthermore, CYP93G2 is the first enzyme of flavanones to C-glycosylflavone biosynthesis pathway in rice.
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* Rice '''''CYP93G2''''' Is a Close Homolog of Sorghum CYP93G3
 
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* '''''CYP93G2''''' is related to the CYP93B subfamily, which consists of dicot flavone synthase II enzymes.
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* '''''CYP93G2''''' generates 2-hydroxy-flavanones, which are modified by O-glycosylation in transgenic Arabidopsis (Arabidopsis thaliana).
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* '''''CYP93G2''''' is the first enzyme that channels flavanones to C-glycosylflavone biosynthesis in rice.
 
===Expression===
 
===Expression===
Please input expression information here.
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* The mutant plants did not show observable differences from the wild-type plants with regard to growth, flowering time, or seed yield.
 
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Both tricin and isovitexin are frequently O-glycosylated (Cavaliere et al., 2005), and the aglycones can be released by acid treatment.
===Evolution===
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* In the acid-hydrolyzed methanolic extracts of '''''CYP93G2''''' mutant leaves, the levels of tricin detected were comparable to those of wild-type samples (Fig. 5C). However, the accumulation of isovitexin was substantially reduced in the mutant plants, suggesting that '''''CYP93G2''''' is required for C-glycosylflavone production in rice. In nonhydrolyzed leaf extracts, a range of potential flavone metabolites were detected in the wild-type samples following HPLC separation, which was monitored at 350 nm (Fig. 5D).
Please input evolution information here.
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* On the other hand, the majority of these UV light-absorbing compounds eluted at 15 to 22 min were markedly reduced in absorbance in the mutant chromatogram.
  
 
You can also add sub-section(s) at will.
 
You can also add sub-section(s) at will.
  
 
==Labs working on this gene==
 
==Labs working on this gene==
Please input related labs here.
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* School of Biological Sciences (Y.D., H.C., C.L.) and Department of Chemistry (I.K.C.), The University of Hong Kong, Hong Kong, China
  
 
==References==
 
==References==
Please input cited references here.
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<references>
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* <ref name="ref1">
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Du Y, Chu H, Chu IK, Lo C. CYP93G2 is a flavanone 2-hydroxylase required for
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C-glycosylflavone biosynthesis in rice. Plant Physiol. 2010 Sep;154(1):324-33.
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doi: 10.1104/pp.110.161042. Epub 2010 Jul 20. PubMed PMID: 20647377; PubMed
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Central PMCID: PMC2938165.
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</ref>
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</references>
  
 
==Structured Information==
 
==Structured Information==
{{JaponicaGene|
 
GeneName = Os06g0102100|
 
Description = Cytochrome P450 family protein|
 
Version = NM_001063068.1 GI:115465867 GeneID:4339836|
 
Length = 2062 bp|
 
Definition = Oryza sativa Japonica Group Os06g0102100, complete gene.|
 
Source = Oryza sativa Japonica Group
 
  
  ORGANISM  Oryza sativa Japonica Group
 
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
 
            Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
 
            clade; Ehrhartoideae; Oryzeae; Oryza.
 
|
 
Chromosome = [[:category:Japonica Chromosome 6|Chromosome 6]]|
 
AP = Chromosome 6:162259..164320|
 
CDS = 162301..163218,163349..163987|
 
GCID = <gbrowseImage1>
 
name=NC_008399:162259..164320
 
source=RiceChromosome06
 
preset=GeneLocation
 
</gbrowseImage1>|
 
GSID = <gbrowseImage2>
 
name=NC_008399:162259..164320
 
source=RiceChromosome06
 
preset=GeneLocation
 
</gbrowseImage2>|
 
CDNA = <cdnaseq>atggaggaaggcgtcgtcggtgggggcggcgctgccgttcttgttgccttgctcgtgaccgtggtgttggcggtgatgaggtcagctggaagcagaagcagcaagcgcggtcggctgcccccgagtcccatggcgctgcccatcatcggccacctccacctcatccggccgccaccccaccgcgccttcgaccgcatcctcgcccgccacgggcccctcgtctacctccgcctcgggccctccacgcactgcgtcgtgatcggctcggccgacgtggcgcgcgacttcctcaagttcgaggccagcatcccagagcggccgcccacggcggtgacgcgacagctggcgtacggcaaggccgggttcgcgttcgcgccctacggggcctactggcggttcgtgaagcggctgtgcatgtctgagctgctgggcccgcgcaccgtggagctgctccgccccgtccgtgccgcggagctggcggacgtgctgcgcgcggcgcagtcggcggcggagaggggcgagggcgtcgacatgagccacgagctggtccgcatggcgaacaacagcatcatgaggatggtggcgagcgctctgcctggcgagatggcggaggcggcgagggactgcgccaagcaggtggcggagctggtgggggcgttcaacgcggaggacttcgtggcggtgtgccggggctgggacctgcaggggatcgggcggaggaccaacgaggtgcacgccaggttcgacgcgctgctggagaccatcatcgaggccaaggaggaggcgcggaggcggagcctaaggctgggccggcgggagagtagcagcaaggacctgctggacatgctcatggacgcggcggaggacgacaccgcggaggtcaagctcaccagggacaacatcaaggccttcgtcctcgacatcttcaccgccgggtcggacacgacggccaccaccgtggagtggatgctggcggagctggttaaccacccggagtgcatggcgaagctgcggggcgagctggacgcggtggtgggcaggtcgcgtctggtgggagagcaggacgtggccaggctgccctacctgcaggcggtgctcaaggagacgttgcgcctccgcccccccgcggtgtttgcgcagcgcgtcactgtggagcccgtccaggtgcgcggctacaccatccccaccgacacccaggtcttcttcaacatcttctccattggccgcgacgccacctactgggaccaaccgctccacttccgccccgaccgcttccttcccgacggcgccggcgccaccgtcgaccccaagggccagcacccgcagctcatgcccttcgggagcggccgccgcgcctgccccggtatgggcctcgccatgcaggccgtcccggcgttcctggccgcgcttgtgcagtgctttgactgggcgccgccgccgtcgcagccgctgccgcttgacatggaggaggcggcggggctcgtgtccgcccgcaagcacccgctcctcctcctcccaacgccgcgcatccaaccgctcccttccttctactcctga</cdnaseq>|
 
AA = <aaseq>MEEGVVGGGGAAVLVALLVTVVLAVMRSAGSRSSKRGRLPPSPM                    ALPIIGHLHLIRPPPHRAFDRILARHGPLVYLRLGPSTHCVVIGSADVARDFLKFEAS                    IPERPPTAVTRQLAYGKAGFAFAPYGAYWRFVKRLCMSELLGPRTVELLRPVRAAELA                    DVLRAAQSAAERGEGVDMSHELVRMANNSIMRMVASALPGEMAEAARDCAKQVAELVG                    AFNAEDFVAVCRGWDLQGIGRRTNEVHARFDALLETIIEAKEEARRRSLRLGRRESSS                    KDLLDMLMDAAEDDTAEVKLTRDNIKAFVLDIFTAGSDTTATTVEWMLAELVNHPECM                    AKLRGELDAVVGRSRLVGEQDVARLPYLQAVLKETLRLRPPAVFAQRVTVEPVQVRGY                    TIPTDTQVFFNIFSIGRDATYWDQPLHFRPDRFLPDGAGATVDPKGQHPQLMPFGSGR                    RACPGMGLAMQAVPAFLAALVQCFDWAPPPSQPLPLDMEEAAGLVSARKHPLLLLPTP                    RIQPLPSFYS</aaseq>|
 
DNA = <dnaseqindica>43..960#1091..1729#accgaccgaaaaagcagaaacagcctgcctgaccccaaaaaaatggaggaaggcgtcgtcggtgggggcggcgctgccgttcttgttgccttgctcgtgaccgtggtgttggcggtgatgaggtcagctggaagcagaagcagcaagcgcggtcggctgcccccgagtcccatggcgctgcccatcatcggccacctccacctcatccggccgccaccccaccgcgccttcgaccgcatcctcgcccgccacgggcccctcgtctacctccgcctcgggccctccacgcactgcgtcgtgatcggctcggccgacgtggcgcgcgacttcctcaagttcgaggccagcatcccagagcggccgcccacggcggtgacgcgacagctggcgtacggcaaggccgggttcgcgttcgcgccctacggggcctactggcggttcgtgaagcggctgtgcatgtctgagctgctgggcccgcgcaccgtggagctgctccgccccgtccgtgccgcggagctggcggacgtgctgcgcgcggcgcagtcggcggcggagaggggcgagggcgtcgacatgagccacgagctggtccgcatggcgaacaacagcatcatgaggatggtggcgagcgctctgcctggcgagatggcggaggcggcgagggactgcgccaagcaggtggcggagctggtgggggcgttcaacgcggaggacttcgtggcggtgtgccggggctgggacctgcaggggatcgggcggaggaccaacgaggtgcacgccaggttcgacgcgctgctggagaccatcatcgaggccaaggaggaggcgcggaggcggagcctaaggctgggccggcgggagagtagcagcaaggacctgctggacatgctcatggacgcggcggaggacgacaccgcggaggtcaagctcaccagggacaacatcaaggccttcgtcctcgtcagtacactatatatcttcaaatactcctcctatatatatatatatatatatatatagtatatattcctccagctccagtgctccagtagaaaagaatgttaattatatatatatatatataatgcaggacatcttcaccgccgggtcggacacgacggccaccaccgtggagtggatgctggcggagctggttaaccacccggagtgcatggcgaagctgcggggcgagctggacgcggtggtgggcaggtcgcgtctggtgggagagcaggacgtggccaggctgccctacctgcaggcggtgctcaaggagacgttgcgcctccgcccccccgcggtgtttgcgcagcgcgtcactgtggagcccgtccaggtgcgcggctacaccatccccaccgacacccaggtcttcttcaacatcttctccattggccgcgacgccacctactgggaccaaccgctccacttccgccccgaccgcttccttcccgacggcgccggcgccaccgtcgaccccaagggccagcacccgcagctcatgcccttcgggagcggccgccgcgcctgccccggtatgggcctcgccatgcaggccgtcccggcgttcctggccgcgcttgtgcagtgctttgactgggcgccgccgccgtcgcagccgctgccgcttgacatggaggaggcggcggggctcgtgtccgcccgcaagcacccgctcctcctcctcccaacgccgcgcatccaaccgctcccttccttctactcctgagcatcctcgatcgtcgatacgtacacctgcgagcctgcgatcctgatccatccatttgtttttgttgacttgttactagcacctgctttgttttacgtacctcacatcaaataattcttattcaactcaaaattaagctacaagtaagctatctcattttgagtcaatgagtagaacaaaatatcatgggcaggggctcgaccttgtttggtcctactcatggccaccctgctcatatctacttggcttttagcaacccttatccttggagaagaaaattaaagagaggaggtgcaatgtaaaacaatttataaataaaactagaccaaagtg</dnaseqindica>|
 
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001063068.1 RefSeq:Os06g0102100]|
 
}}
 
 
[[Category:Genes]]
 
[[Category:Genes]]
 
[[Category:Japonica mRNA]]
 
[[Category:Japonica mRNA]]

Latest revision as of 07:13, 17 October 2016

The rice Os06g0102100 was reported as CYP93G2 in 2010 [1] by researchers from China.

Annotated Information

Figure 5. Analysis of the rice CYP93G2 T-DNA mutant[1].

Gene Symbol

  • Os06g0102100 <=> OsF2H,F2H,CYP93G2

Function

  • Rice CYP93G2 Is a Close Homolog of Sorghum CYP93G3
  • CYP93G2 is related to the CYP93B subfamily, which consists of dicot flavone synthase II enzymes.
  • CYP93G2 generates 2-hydroxy-flavanones, which are modified by O-glycosylation in transgenic Arabidopsis (Arabidopsis thaliana).
  • CYP93G2 is the first enzyme that channels flavanones to C-glycosylflavone biosynthesis in rice.

Expression

  • The mutant plants did not show observable differences from the wild-type plants with regard to growth, flowering time, or seed yield.

Both tricin and isovitexin are frequently O-glycosylated (Cavaliere et al., 2005), and the aglycones can be released by acid treatment.

  • In the acid-hydrolyzed methanolic extracts of CYP93G2 mutant leaves, the levels of tricin detected were comparable to those of wild-type samples (Fig. 5C). However, the accumulation of isovitexin was substantially reduced in the mutant plants, suggesting that CYP93G2 is required for C-glycosylflavone production in rice. In nonhydrolyzed leaf extracts, a range of potential flavone metabolites were detected in the wild-type samples following HPLC separation, which was monitored at 350 nm (Fig. 5D).
  • On the other hand, the majority of these UV light-absorbing compounds eluted at 15 to 22 min were markedly reduced in absorbance in the mutant chromatogram.

You can also add sub-section(s) at will.

Labs working on this gene

  • School of Biological Sciences (Y.D., H.C., C.L.) and Department of Chemistry (I.K.C.), The University of Hong Kong, Hong Kong, China

References

  1. 1.0 1.1 Du Y, Chu H, Chu IK, Lo C. CYP93G2 is a flavanone 2-hydroxylase required for C-glycosylflavone biosynthesis in rice. Plant Physiol. 2010 Sep;154(1):324-33. doi: 10.1104/pp.110.161042. Epub 2010 Jul 20. PubMed PMID: 20647377; PubMed Central PMCID: PMC2938165.

Structured Information