Difference between revisions of "Os08g0151300"

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(Created page with "{{JaponicaGene| GeneName = Os08g0151300| Description = Myb, DNA-binding domain containing protein| Version = NM_001067532.1 GI:115474800 GeneID:4344665| Length = 2820 bp| ...")
 
(→‎Subcellular localization)
 
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{{JaponicaGene|
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The rice '''''Os08g0151300''''' was reported as '''''OsMYB103L''''' in 2014 <ref name="ref1" /> by researchers from China.  
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GeneName = Os08g0151300|
 
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Description = Myb, DNA-binding domain containing protein|
 
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Version = NM_001067532.1 GI:115474800 GeneID:4344665|
 
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Length = 2820 bp|
 
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Definition = Oryza sativa Japonica Group Os08g0151300, complete gene.|
 
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Source = Oryza sativa Japonica Group
 
  
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  ORGANISM  Oryza sativa Japonica Group
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==Annotated Information==
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            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
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[[File:104-Os08g0151300.png|right|thumb|327px|'''Figure 2.''' ''Subcellular localization and transactivation analysis of OsMYB103L.<ref name="ref1" />.'']]
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            Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
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===Function===
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            clade; Ehrhartoideae; Oryzeae; Oryza.
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* '''''OsMYB103L''''' encodes an R2R3-MYB transcription factor.
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|
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* '''''OsMYB103L''''' may target CESA genes for regulation of cellulose synthesis and could potentially be engineered for desirable leaf shape and mechanical strength in rice.
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Chromosome = [[:category:Japonica Chromosome 8|Chromosome 8]]|
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AP = Chromosome 8:2947556..2950375|
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===Phenotypic analysis===
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CDS = 2947987..2948803,2949733..2949862,2950026..2950158|
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* Expression levels of several cellulose synthase genes (CESAs) were significantly increased, as was the cellulose content in OsMYB103L overexpressing lines.  
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GCID = <gbrowseImage1>
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* Knockdown of OsMYB103L by RNA interference led to a decreased level of cellulose content and reduced mechanical strength in leaves. Meanwhile, the expression levels of several CESA genes were decreased in these knockdown lines.
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name=NC_008401:2947556..2950375
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source=RiceChromosome08
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===Subcellular localization===
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preset=GeneLocation
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* '''''OsMYB103L ''''' was localized in the nucleus with transactivation activity.
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</gbrowseImage1>|
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GSID = <gbrowseImage2>
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You can also add sub-section(s) at will.
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name=NC_008401:2947556..2950375
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source=RiceChromosome08
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==Labs working on this gene==
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preset=GeneLocation
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* State Key Laboratory of Plant Genomics and National Center for Plant Gene Research, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101, China
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</gbrowseImage2>|
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* CAS Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing 100101, China.
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CDNA = <cdnaseq>atggggcatcactcttgctgcaaccagcagaaggtgaagaggggcctctggtctcctgaggaagatgagaagctcatcagatacatcaccacccatggctatggctgctggagcgaggtcccggagaaagccggtttgcagcgatgtgggaagagctgccggctccggtggatcaactacctgagaccggacatccggcgagggcggttcacggcggaggaggagaagctcatcatcagcctgcacgccattgttggcaacaggtgggcccacattgccagccacctgcctggccggaccgacaacgagatcaagaactactggaattcatggatcaagaagaagattcgcaagccggcggcggccgccgccgcggcgaccacgacgagcccgaacaacccgccgccgtgcagcacggcgacgtcggaccaccaccacctgccgccgccggcgttcggcggcgctgatcaccacctgcagctcgacgccatcatcaaccagaacctgatatcatccctgccgccgaagctcgccaccggcgacgactcgccgccggcggtgcccgggctgccgcaccactgcccgctcttcatgttcgacaccaccaccaccggcgccggcggcgccatcagcccgccgccgccgtcatcactgatcccaacccacctccaccaccaccaccacccgttcatcgccagcttcacggcggcgatggccgccgacacgccgagctacctgcccccgctggtcgacggcatggcagccatgggagcggccatggattgcagcttagaagatggccaaacagccgccgccatggccgccaccaatggctactaccagcatcatcagaagcatcagcagctggagattgagctggaggaggaggagcagaggcagctagggcatcatcatcatcagcatcaccatgagcatgagcatgaaaatcatcagtgggatgaagaagaagcacagcatctgctgatgtgggatcaagaagtactaacatcatccaacttggaggccatgcaaagtggtgctcattccctcctttttatgggaccaaatgaccatgattaa</cdnaseq>|
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* Department of Ecology, Peking University, Beijing 100871, China.
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AA = <aaseq>MGHHSCCNQQKVKRGLWSPEEDEKLIRYITTHGYGCWSEVPEKA                    GLQRCGKSCRLRWINYLRPDIRRGRFTAEEEKLIISLHAIVGNRWAHIASHLPGRTDN                    EIKNYWNSWIKKKIRKPAAAAAAATTTSPNNPPPCSTATSDHHHLPPPAFGGADHHLQ                    LDAIINQNLISSLPPKLATGDDSPPAVPGLPHHCPLFMFDTTTTGAGGAISPPPPSSL                    IPTHLHHHHHPFIASFTAAMAADTPSYLPPLVDGMAAMGAAMDCSLEDGQTAAAMAAT                    NGYYQHHQKHQQLEIELEEEEQRQLGHHHHQHHHEHEHENHQWDEEEAQHLLMWDQEV                    LTSSNLEAMQSGAHSLLFMGPNDHD</aaseq>|
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* Key Laboratory of Agro-Ecological Processes in Subtropical Region, Institute of Subtropical Agriculture, Chinese Academy of Sciences, Changsha 410125, China.
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DNA = <dnaseqindica>1573..2389#514..643#218..350#aagagaaggtagctcatgcatattaaaagggctaaacaccaaccaaaccctttgctcctccatgacaacaatgtcatgttgctagcagctagatcaagaatatattcaagatagttaattgctgcatataggttttgcaagttgcagaacttgcagctatattgttgttacactagctgttcatatcttggattccagtgatatctagagtgcatgcatggggcatcactcttgctgcaaccagcagaaggtgaagaggggcctctggtctcctgaggaagatgagaagctcatcagatacatcaccacccatggctatggctgctggagcgaggtcccggagaaagccggtacgccgcatatcgtcgatcgatcgattaatcccccaatatcttgattgattgatgaacattcaatgagatggatgaactatcattgcttgattgatgaacattttcttgaggaactgatctgtcaattgctgaattgtgtgcaatgtggtggtttgtgaaggtttgcagcgatgtgggaagagctgccggctccggtggatcaactacctgagaccggacatccggcgagggcggttcacggcggaggaggagaagctcatcatcagcctgcacgccattgttggcaacaggtaggttcttgcatgcagcagcagcaacacgatgatcagttagttcatggtgaccttattattagtacctaccaagtactacctaatcgagctataattattcttctctaaattcttgattaatttcgaagattccccaattcccccaaagtagagatatgcatggcatttgatcaaattttgctgtttttcttgcaatttgatgattgcattacatcctaggctcagctaattgactgatattatctagaaaaatctgtttgaatgatgtgttactgttcttcggcaatgacgactatctatctccattgctgccctgtcatcaacaattgctgtcgatgctcctattcttctgaatttttttcctccttttgcttcattttcagttcactgtaatatcgatttaacaatcgataatcccgtcagtgacacatcacatgacaaaagtgatatgaaatttcctcaaaagataattaaaggtgattctgaagtgtcctagtatggtacttatatatggccctcagagcttgattatgctaattttcccaagatttttcgatttttctccgttaaaattaagttgaaaggagcaagtcatcatgttgacgtcaagcatgacaaatcgtattagccgtcgttttctacttgtttagcttgaacacgacgattataacaaatcaagccgtacatgagagtagcattacttctaaacaaagggttccaaattaagtgtacatacagcatcacacaactatattatattcttgaattcaatatatatacatagtatatatatctatagtaccaacttgattgatcattagtcgcatgattaatttgaccaagatatgatggtgtgtagtatcagtatataaaccatagagagaataattaactaattataattaatgttgttgtctctctgacaggtgggcccacattgccagccacctgcctggccggaccgacaacgagatcaagaactactggaattcatggatcaagaagaagattcgcaagccggcggcggccgccgccgcggcgaccacgacgagcccgaacaacccgccgccgtgcagcacggcgacgtcggaccaccaccacctgccgccgccggcgttcggcggcgctgatcaccacctgcagctcgacgccatcatcaaccagaacctgatatcatccctgccgccgaagctcgccaccggcgacgactcgccgccggcggtgcccgggctgccgcaccactgcccgctcttcatgttcgacaccaccaccaccggcgccggcggcgccatcagcccgccgccgccgtcatcactgatcccaacccacctccaccaccaccaccacccgttcatcgccagcttcacggcggcgatggccgccgacacgccgagctacctgcccccgctggtcgacggcatggcagccatgggagcggccatggattgcagcttagaagatggccaaacagccgccgccatggccgccaccaatggctactaccagcatcatcagaagcatcagcagctggagattgagctggaggaggaggagcagaggcagctagggcatcatcatcatcagcatcaccatgagcatgagcatgaaaatcatcagtgggatgaagaagaagcacagcatctgctgatgtgggatcaagaagtactaacatcatccaacttggaggccatgcaaagtggtgctcattccctcctttttatgggaccaaatgaccatgattaagttggtaataataacctatgtctaccccccccccaattttttttctttttgggaaaaaaaaacttgcatgtgcatattttgcatctcacaacatctgatcccatctctgatctgatcttgatctccctttgatcaatctagctctcactactaccccatctgatctgtctatacatgaaataatgaggttttgcaaattaaaggcgcgcgtaatttattgtgttttggattttttttctatctctctccaagagcttttattttggtttttttacttttttttttggattggagtgtgaagactgaatagtgtgtgtcaattgggttttttgtaaagagaccaccttgtatgagtgcatggcatggcactttggagtgtgtaatttgattgatgtatctaagtgaatttataataaacacaggaggatgac</dnaseqindica>|
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==References==
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Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001067532.1 RefSeq:Os08g0151300]|
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<references>
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}}
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* <ref name="ref1">
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[[Category:Genes]]
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Yang C, Li D, Liu X, Ji C, Hao L, Zhao X, Li X, Chen C, Cheng Z, Zhu L.
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[[Category:Japonica mRNA]]
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OsMYB103L, an R2R3-MYB transcription factor, influences leaf rolling and
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[[Category:Oryza Sativa Japonica Group]]
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mechanical strength in rice (Oryza sativa L.). BMC Plant Biol. 2014 Jun 6;14:158.
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[[Category:Japonica Genes]]
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doi: 10.1186/1471-2229-14-158. PubMed PMID: 24906444; PubMed Central PMCID:
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[[Category:Japonica Chromosome 8]]
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PMC4062502.
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[[Category:Chromosome 8]]
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</ref>
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</references>
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==Structured Information==
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[[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 8]]

Latest revision as of 13:35, 17 October 2016

The rice Os08g0151300 was reported as OsMYB103L in 2014 [1] by researchers from China.

Annotated Information

Figure 2. Subcellular localization and transactivation analysis of OsMYB103L.[1].

Function

  • OsMYB103L encodes an R2R3-MYB transcription factor.
  • OsMYB103L may target CESA genes for regulation of cellulose synthesis and could potentially be engineered for desirable leaf shape and mechanical strength in rice.

Phenotypic analysis

  • Expression levels of several cellulose synthase genes (CESAs) were significantly increased, as was the cellulose content in OsMYB103L overexpressing lines.
  • Knockdown of OsMYB103L by RNA interference led to a decreased level of cellulose content and reduced mechanical strength in leaves. Meanwhile, the expression levels of several CESA genes were decreased in these knockdown lines.

Subcellular localization

  • OsMYB103L was localized in the nucleus with transactivation activity.

You can also add sub-section(s) at will.

Labs working on this gene

  • State Key Laboratory of Plant Genomics and National Center for Plant Gene Research, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101, China
  • CAS Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing 100101, China.
  • Department of Ecology, Peking University, Beijing 100871, China.
  • Key Laboratory of Agro-Ecological Processes in Subtropical Region, Institute of Subtropical Agriculture, Chinese Academy of Sciences, Changsha 410125, China.

References

  1. ↑ 1.0 1.1 Yang C, Li D, Liu X, Ji C, Hao L, Zhao X, Li X, Chen C, Cheng Z, Zhu L. OsMYB103L, an R2R3-MYB transcription factor, influences leaf rolling and mechanical strength in rice (Oryza sativa L.). BMC Plant Biol. 2014 Jun 6;14:158. doi: 10.1186/1471-2229-14-158. PubMed PMID: 24906444; PubMed Central PMCID: PMC4062502.

Structured Information