Difference between revisions of "Os08g0151300"

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(Created page with "{{JaponicaGene| GeneName = Os08g0151300| Description = Myb, DNA-binding domain containing protein| Version = NM_001067532.1 GI:115474800 GeneID:4344665| Length = 2820 bp| ...")
 
(Subcellular localization)
 
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{{JaponicaGene|
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The rice '''''Os08g0151300''''' was reported as '''''OsMYB103L''''' in 2014 <ref name="ref1" /> by researchers from China.  
GeneName = Os08g0151300|
 
Description = Myb, DNA-binding domain containing protein|
 
Version = NM_001067532.1 GI:115474800 GeneID:4344665|
 
Length = 2820 bp|
 
Definition = Oryza sativa Japonica Group Os08g0151300, complete gene.|
 
Source = Oryza sativa Japonica Group
 
  
  ORGANISM  Oryza sativa Japonica Group
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==Annotated Information==
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
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[[File:104-Os08g0151300.png|right|thumb|327px|'''Figure 2.''' ''Subcellular localization and transactivation analysis of OsMYB103L.<ref name="ref1" />.'']]
            Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
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===Function===
            clade; Ehrhartoideae; Oryzeae; Oryza.
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* '''''OsMYB103L''''' encodes an R2R3-MYB transcription factor.
|
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* '''''OsMYB103L''''' may target CESA genes for regulation of cellulose synthesis and could potentially be engineered for desirable leaf shape and mechanical strength in rice.
Chromosome = [[:category:Japonica Chromosome 8|Chromosome 8]]|
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AP = Chromosome 8:2947556..2950375|
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===Phenotypic analysis===
CDS = 2947987..2948803,2949733..2949862,2950026..2950158|
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* Expression levels of several cellulose synthase genes (CESAs) were significantly increased, as was the cellulose content in OsMYB103L overexpressing lines.  
GCID = <gbrowseImage1>
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* Knockdown of OsMYB103L by RNA interference led to a decreased level of cellulose content and reduced mechanical strength in leaves. Meanwhile, the expression levels of several CESA genes were decreased in these knockdown lines.
name=NC_008401:2947556..2950375
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source=RiceChromosome08
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===Subcellular localization===
preset=GeneLocation
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* '''''OsMYB103L ''''' was localized in the nucleus with transactivation activity.
</gbrowseImage1>|
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GSID = <gbrowseImage2>
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You can also add sub-section(s) at will.
name=NC_008401:2947556..2950375
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source=RiceChromosome08
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==Labs working on this gene==
preset=GeneLocation
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* State Key Laboratory of Plant Genomics and National Center for Plant Gene Research, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101, China
</gbrowseImage2>|
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* CAS Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing 100101, China.
CDNA = <cdnaseq>atggggcatcactcttgctgcaaccagcagaaggtgaagaggggcctctggtctcctgaggaagatgagaagctcatcagatacatcaccacccatggctatggctgctggagcgaggtcccggagaaagccggtttgcagcgatgtgggaagagctgccggctccggtggatcaactacctgagaccggacatccggcgagggcggttcacggcggaggaggagaagctcatcatcagcctgcacgccattgttggcaacaggtgggcccacattgccagccacctgcctggccggaccgacaacgagatcaagaactactggaattcatggatcaagaagaagattcgcaagccggcggcggccgccgccgcggcgaccacgacgagcccgaacaacccgccgccgtgcagcacggcgacgtcggaccaccaccacctgccgccgccggcgttcggcggcgctgatcaccacctgcagctcgacgccatcatcaaccagaacctgatatcatccctgccgccgaagctcgccaccggcgacgactcgccgccggcggtgcccgggctgccgcaccactgcccgctcttcatgttcgacaccaccaccaccggcgccggcggcgccatcagcccgccgccgccgtcatcactgatcccaacccacctccaccaccaccaccacccgttcatcgccagcttcacggcggcgatggccgccgacacgccgagctacctgcccccgctggtcgacggcatggcagccatgggagcggccatggattgcagcttagaagatggccaaacagccgccgccatggccgccaccaatggctactaccagcatcatcagaagcatcagcagctggagattgagctggaggaggaggagcagaggcagctagggcatcatcatcatcagcatcaccatgagcatgagcatgaaaatcatcagtgggatgaagaagaagcacagcatctgctgatgtgggatcaagaagtactaacatcatccaacttggaggccatgcaaagtggtgctcattccctcctttttatgggaccaaatgaccatgattaa</cdnaseq>|
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* Department of Ecology, Peking University, Beijing 100871, China.
AA = <aaseq>MGHHSCCNQQKVKRGLWSPEEDEKLIRYITTHGYGCWSEVPEKA                    GLQRCGKSCRLRWINYLRPDIRRGRFTAEEEKLIISLHAIVGNRWAHIASHLPGRTDN                    EIKNYWNSWIKKKIRKPAAAAAAATTTSPNNPPPCSTATSDHHHLPPPAFGGADHHLQ                    LDAIINQNLISSLPPKLATGDDSPPAVPGLPHHCPLFMFDTTTTGAGGAISPPPPSSL                    IPTHLHHHHHPFIASFTAAMAADTPSYLPPLVDGMAAMGAAMDCSLEDGQTAAAMAAT                    NGYYQHHQKHQQLEIELEEEEQRQLGHHHHQHHHEHEHENHQWDEEEAQHLLMWDQEV                    LTSSNLEAMQSGAHSLLFMGPNDHD</aaseq>|
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* Key Laboratory of Agro-Ecological Processes in Subtropical Region, Institute of Subtropical Agriculture, Chinese Academy of Sciences, Changsha 410125, China.
DNA = <dnaseqindica>1573..2389#514..643#218..350#aagagaaggtagctcatgcatattaaaagggctaaacaccaaccaaaccctttgctcctccatgacaacaatgtcatgttgctagcagctagatcaagaatatattcaagatagttaattgctgcatataggttttgcaagttgcagaacttgcagctatattgttgttacactagctgttcatatcttggattccagtgatatctagagtgcatgcatggggcatcactcttgctgcaaccagcagaaggtgaagaggggcctctggtctcctgaggaagatgagaagctcatcagatacatcaccacccatggctatggctgctggagcgaggtcccggagaaagccggtacgccgcatatcgtcgatcgatcgattaatcccccaatatcttgattgattgatgaacattcaatgagatggatgaactatcattgcttgattgatgaacattttcttgaggaactgatctgtcaattgctgaattgtgtgcaatgtggtggtttgtgaaggtttgcagcgatgtgggaagagctgccggctccggtggatcaactacctgagaccggacatccggcgagggcggttcacggcggaggaggagaagctcatcatcagcctgcacgccattgttggcaacaggtaggttcttgcatgcagcagcagcaacacgatgatcagttagttcatggtgaccttattattagtacctaccaagtactacctaatcgagctataattattcttctctaaattcttgattaatttcgaagattccccaattcccccaaagtagagatatgcatggcatttgatcaaattttgctgtttttcttgcaatttgatgattgcattacatcctaggctcagctaattgactgatattatctagaaaaatctgtttgaatgatgtgttactgttcttcggcaatgacgactatctatctccattgctgccctgtcatcaacaattgctgtcgatgctcctattcttctgaatttttttcctccttttgcttcattttcagttcactgtaatatcgatttaacaatcgataatcccgtcagtgacacatcacatgacaaaagtgatatgaaatttcctcaaaagataattaaaggtgattctgaagtgtcctagtatggtacttatatatggccctcagagcttgattatgctaattttcccaagatttttcgatttttctccgttaaaattaagttgaaaggagcaagtcatcatgttgacgtcaagcatgacaaatcgtattagccgtcgttttctacttgtttagcttgaacacgacgattataacaaatcaagccgtacatgagagtagcattacttctaaacaaagggttccaaattaagtgtacatacagcatcacacaactatattatattcttgaattcaatatatatacatagtatatatatctatagtaccaacttgattgatcattagtcgcatgattaatttgaccaagatatgatggtgtgtagtatcagtatataaaccatagagagaataattaactaattataattaatgttgttgtctctctgacaggtgggcccacattgccagccacctgcctggccggaccgacaacgagatcaagaactactggaattcatggatcaagaagaagattcgcaagccggcggcggccgccgccgcggcgaccacgacgagcccgaacaacccgccgccgtgcagcacggcgacgtcggaccaccaccacctgccgccgccggcgttcggcggcgctgatcaccacctgcagctcgacgccatcatcaaccagaacctgatatcatccctgccgccgaagctcgccaccggcgacgactcgccgccggcggtgcccgggctgccgcaccactgcccgctcttcatgttcgacaccaccaccaccggcgccggcggcgccatcagcccgccgccgccgtcatcactgatcccaacccacctccaccaccaccaccacccgttcatcgccagcttcacggcggcgatggccgccgacacgccgagctacctgcccccgctggtcgacggcatggcagccatgggagcggccatggattgcagcttagaagatggccaaacagccgccgccatggccgccaccaatggctactaccagcatcatcagaagcatcagcagctggagattgagctggaggaggaggagcagaggcagctagggcatcatcatcatcagcatcaccatgagcatgagcatgaaaatcatcagtgggatgaagaagaagcacagcatctgctgatgtgggatcaagaagtactaacatcatccaacttggaggccatgcaaagtggtgctcattccctcctttttatgggaccaaatgaccatgattaagttggtaataataacctatgtctaccccccccccaattttttttctttttgggaaaaaaaaacttgcatgtgcatattttgcatctcacaacatctgatcccatctctgatctgatcttgatctccctttgatcaatctagctctcactactaccccatctgatctgtctatacatgaaataatgaggttttgcaaattaaaggcgcgcgtaatttattgtgttttggattttttttctatctctctccaagagcttttattttggtttttttacttttttttttggattggagtgtgaagactgaatagtgtgtgtcaattgggttttttgtaaagagaccaccttgtatgagtgcatggcatggcactttggagtgtgtaatttgattgatgtatctaagtgaatttataataaacacaggaggatgac</dnaseqindica>|
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==References==
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001067532.1 RefSeq:Os08g0151300]|
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<references>
}}
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* <ref name="ref1">
[[Category:Genes]]
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Yang C, Li D, Liu X, Ji C, Hao L, Zhao X, Li X, Chen C, Cheng Z, Zhu L.
[[Category:Japonica mRNA]]
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OsMYB103L, an R2R3-MYB transcription factor, influences leaf rolling and
[[Category:Oryza Sativa Japonica Group]]
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mechanical strength in rice (Oryza sativa L.). BMC Plant Biol. 2014 Jun 6;14:158.
[[Category:Japonica Genes]]
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doi: 10.1186/1471-2229-14-158. PubMed PMID: 24906444; PubMed Central PMCID:
[[Category:Japonica Chromosome 8]]
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PMC4062502.
[[Category:Chromosome 8]]
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</ref>
 +
</references>
 +
 
 +
==Structured Information==
 +
[[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 8]]

Latest revision as of 13:35, 17 October 2016

The rice Os08g0151300 was reported as OsMYB103L in 2014 [1] by researchers from China.

Annotated Information

Figure 2. Subcellular localization and transactivation analysis of OsMYB103L.[1].

Function

  • OsMYB103L encodes an R2R3-MYB transcription factor.
  • OsMYB103L may target CESA genes for regulation of cellulose synthesis and could potentially be engineered for desirable leaf shape and mechanical strength in rice.

Phenotypic analysis

  • Expression levels of several cellulose synthase genes (CESAs) were significantly increased, as was the cellulose content in OsMYB103L overexpressing lines.
  • Knockdown of OsMYB103L by RNA interference led to a decreased level of cellulose content and reduced mechanical strength in leaves. Meanwhile, the expression levels of several CESA genes were decreased in these knockdown lines.

Subcellular localization

  • OsMYB103L was localized in the nucleus with transactivation activity.

You can also add sub-section(s) at will.

Labs working on this gene

  • State Key Laboratory of Plant Genomics and National Center for Plant Gene Research, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101, China
  • CAS Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing 100101, China.
  • Department of Ecology, Peking University, Beijing 100871, China.
  • Key Laboratory of Agro-Ecological Processes in Subtropical Region, Institute of Subtropical Agriculture, Chinese Academy of Sciences, Changsha 410125, China.

References

  1. 1.0 1.1 Yang C, Li D, Liu X, Ji C, Hao L, Zhao X, Li X, Chen C, Cheng Z, Zhu L. OsMYB103L, an R2R3-MYB transcription factor, influences leaf rolling and mechanical strength in rice (Oryza sativa L.). BMC Plant Biol. 2014 Jun 6;14:158. doi: 10.1186/1471-2229-14-158. PubMed PMID: 24906444; PubMed Central PMCID: PMC4062502.

Structured Information