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| − | {{JaponicaGene|
| + | The rice '''''Os12g0465700''''' was reported as '''''DEC''''' in 2012 <ref name="ref1" /> by researchers from Japan. |
| − | GeneName = Os12g0465700|
| |
| − | Description = Conserved hypothetical protein|
| |
| − | Version = NM_001073274.2 GI:297613132 GeneID:4352186|
| |
| − | Length = 7641 bp|
| |
| − | Definition = Oryza sativa Japonica Group Os12g0465700, complete gene.|
| |
| − | Source = Oryza sativa Japonica Group
| |
| | | | |
| − | ORGANISM Oryza sativa Japonica Group
| + | ==Annotated Information== |
| − | Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
| + | [[File:109-Os12g0465700.png|right|thumb|327px|'''Figure 1.''' ''Phenotypes of the dec-1 mutant.<ref name="ref1" />.'']] |
| − | Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
| + | ===Function=== |
| − | clade; Ehrhartoideae; Oryzeae; Oryza.
| + | * '''''DEC''''' regulates the phyllotactic pattern in rice. |
| − | |
| + | * '''''DEC''''' has opposite functions in the shoot apical meristem and root apical meristem. |
| − | Chromosome = [[:category:Japonica Chromosome 12|Chromosome 12]]|
| + | * '''''DEC''''' encodes a plant-specific protein containing a glutamine-rich region and a conserved motif. |
| − | AP = Chromosome 12:16648315..16655955|
| + | * '''''DEC''''' controls the phyllotactic pattern by affecting cytokinin signaling in rice. |
| − | CDS = 16648585..16649283|
| + | |
| − | GCID = <gbrowseImage1>
| + | ===Expression=== |
| − | name=NC_008405:16648315..16655955
| + | * Expression analysis showed that several type A response regulator genes that act in the cytokinin signaling pathway were down-regulated in the dec mutant. |
| − | source=RiceChromosome12
| + | |
| − | preset=GeneLocation
| + | ===Phenotypic analysis=== |
| − | </gbrowseImage1>|
| + | * Two allelic mutants, dec-1 and dec-2, were originally identified as embryonic mutants exhibiting abnormally shaped mature embryos. |
| − | GSID = <gbrowseImage2>
| + | * In mature dec-1 embryos, although all embryonic organs and three leaf primordia were present, a malformed scutellum and an enlarged SAM were observed (Figure 1a,b). |
| − | name=NC_008405:16648315..16655955
| + | * After germination, the majority of dec-1 seedlings produced short and erect leaves with an abnormal phyllotaxy (Figure 1c). |
| − | source=RiceChromosome12
| + | * Cross-sections of the shoot apex revealed that the wild-type displayed a distichous phyllotaxy with a divergence angle of 180°. In contrast, approximately half of dec-1 seedlings exhibited a decussate phyllotaxy, except for the first embryonic leaf (Figure 1d,e). |
| − | preset=GeneLocation
| + | * Thus, the dec mutation caused conversion of a distichous phyllotaxy to a decussate phyllotaxy during early vegetative development. |
| − | </gbrowseImage2>| | + | |
| − | CDNA = <cdnaseq>atgtgcggtttcaatacttttagattatttgatcgcttcatgacatctgaagttactgataccatcttatgtattgtgcatactaggctactaccctaccatgtggttgctgactatgaggctgaagaagatgacagaatccttgacagtgatacaactggacagattccttcgcgcctgcagcaatgggatcataacattctggtcaaaattgctgagttcacaactacttttgagaaacaagttttggcgtacaatataatgaccaagaaaagagccatcggcgagttcagatcagaggagcggctcatgctggagcaggctttgttaatggaggaaaagcaagctatgatggggctaagagcagagatagaatcaagggagaaagcaggtcgtgaggctgctgaagctaagatgcgtatggcaatggctgaacaagctcgagcggaggcccaagcgcactcggagatgataggtcatggccctttgagggcccatgctgcagcgtcccaaggcgaagatggccctagtcatgagatgatgcaagagcaaggtgaagatggatggggaaatgctcaaagggacgatgaagatccatctgaagatttccttaatgatgaaaatgaacctgagaatgggaactctgatatgcaagaggactggcgcagatcaggagaactcgatctgaactctaggtaa</cdnaseq>|
| + | You can also add sub-section(s) at will. |
| − | AA = <aaseq>MCGFNTFRLFDRFMTSEVTDTILCIVHTRLLPYHVVADYEAEED DRILDSDTTGQIPSRLQQWDHNILVKIAEFTTTFEKQVLAYNIMTKKRAIGEFRSEER LMLEQALLMEEKQAMMGLRAEIESREKAGREAAEAKMRMAMAEQARAEAQAHSEMIGH GPLRAHAAASQGEDGPSHEMMQEQGEDGWGNAQRDDEDPSEDFLNDENEPENGNSDMQ EDWRRSGELDLNSR</aaseq>|
| + | |
| − | DNA = <dnaseqindica>6673..7371#acggattttgcccgaaactgaagctccaccaccgtttcccccacagatctcactcctcgctgctcccccgccatggacgacgccgcgaaccccaccccgacttcctcctcctcctccgccgccgccgcagccgcggccgccgcggcgcagcaccagcagcttcagcgccagatcttcctcatgcagcaggcccaggcgcagtcgcagtcgcagggccacgccccgacgccgcagcagctgtcgcagcaggccatgtcccgcttcccctccaacatcgacgcccacctccgcccgctcggccccatccgcttccagcagcccccgcagccgcagccgcagccgcctcagcctccgccacagccgcaaccgcagcagcagcagccgcactccggggccccgtcgccgtcgcagtcgcaggcgtccccccagcagcagcagcagcagcaggcggcggcgatggcggcggctgcggcgagggtgcggagccccgaggtggagatggcgctgcaggacgcgatgcgggtgtgcaaccccgacatcaagacgcccttccagtccctcgaggacgccgtcaacaggtgggggaatcgcaccaaatttctctgcatcttttttttttcttatatacgttattatccacgattttgctggtaatcctcatccatttgatttcgctgcgtcagctgaaattggggtgctttaaatttttaactgtatactgatttaggctacgcgttccggatgaatttgttgccaattcgggctcgaggcttgcccggatcgtttcccattttttgggtttcgattattagaatttgggagcgtcttagaaattttaacattaatcttcattccttgttaaacaaatcagacaaaattctcccaaaaggtgaatagtaggggcattaggggattggaggatcaggacaacattttggcctgtatgtcttttcttttccacagagcagattgttaatgctgtatgtggttcatgagtgaaactcgtggtccaatttaggaccagtttagcacgaattgcaggtgacatgcttttcggcatatgtgcctctggttattttctattgatggggattttgtttatttaaggtgacatacttttagcttttggtcatatactaaccagtaattgcaagctggtttcttcgtgtagtaacttgagtgattgtatggattgctttatcttagcagattgttatcttagatgttttaactccagttattcttaacccacataagatttttaactgttttagtcattcttaacttcttttccctgatccattccattttagtgactgaaaaattcttgtttcagcattctgctcaaaatgcttaatgagcatacaagcaaagaatgtagtcagagcaaccagaagttatgcagcataaactaagttgaataaactaaactgcattcagtattttttaagatagcaaattttcctccttgtttctattcggtgataaatgcaaaggtccataatacttttactagcttttccaaataatcgctgaccatggttgagtggaataaatggtatgcatctgctgttaaggtcaatactttatttagcagtattttctttgctagtagaaaactcttttattttgctcggatcttactatattgtataatgatttaggtagaactatggaagggcatattgtattgggaacatttataggaaccctattgcattccaagagatgtatgaggcacaatgaccaccctacaatgagagcttcctgttcattctttgcatggagctttgcgcactaacatggttttcaaaatgtaacaatgaccactaatttcttttacaacgtatttataaaacctaactccattacaaaagtactttctgtaacaaatctacacatacaattttcatttttcttgcttacaatccaaatatttgaaaagatatacatgtatgaagttttgacttaggacatgtccaaattgacatatttttttcactggaaggggtataccttatatatctttgtatgatttcttagaaaaatatgactgcacctattagtgcgaatattttcttgagaaaaagagttgcttctgggtactggggccaatttatgtaccaacaagtttgttctgtatgaaactactctttatgagaaaaactgggaaaaaagattttaatgttaggatgtctgtgcaaaaattattaagtattatataaatatgttttgagaacacaaatattctaactgtctgtggacgataggactaactgcatacaattactacttgagttccttcaaatttttagtgcacatattaaccagatctttttctattatctttttatggtatagttgggcacacagtatacacgcttctagatttgtttccttttgatatatgtggttgcctctggcattcaaggtgttaaattcacagcaaccatttttcttccagaccataaaaagcttaatacttggaccataagtttaatagtgtaacctctgaaaattggttggctgcctgccacaggagttctatttgttaacatgcatgatggaaggcagatcagtcctagttttggtagtttttcaataacagggttgtaatcatctattttgttaaatataatttgcgttgtttaaaaacaatgggaattacagggtggcatatttccaattttaagaatctgggtggcatgaaacgccgtgttttgaagtggcgtgtaccacattttctgtttagatattaccatttttaccaatgttatagtcatgtttaaaatactaaatcggcactgttttgattagcggagcacataaaaaagattactaccttccattcggacccacacggttttgacccaaaaggtatctgcgtagtcacatccaactggcaagtttaggactggtgtatcctttccaaaaaagtttaggactggtttaacaaattttgcccgaaacaaaagccccaccatttcccccagatcttctcctctagccaatccacctccgcccccaccatggacgccgccgcgaactccaccccgacctcctcggcatccaccgtggcgcagaaccagctgcaccagcgccagatcttcctcatgcagcaggcccaggcccaggcgcaggcgcaggggcaagggcacacaccgacgctgcagcagctgtcgcagcaggccatgtccttcttcccctccaacatcgatgcccacctgcccctgcctggcccggactccaccccgacctcctcggcatccaccgtggctcagaaccagctgcaccagtgccagatcttcctcatgcagcaggcccaggcgcaggcgcaggcgcaggggcaagggtacacaccgacgccgcagcagctgtcgcagcaggccatgtccttcttcccctccaacatcgatgcccacctgcccctgcctggcccgatccgcttccagcaacccctgccccagcagccaccaccgccgcagcagcagatccactcctggggcccgtcgctgttgcagtcgtgggcgtccctccagcagcagcagcaggcggcagtggcagccgtggcaagggtgcagagccctgaggttgagatggctctgcaggacgtgatgcaggtgtgcaaccccgacatcaagacacccttccagtccatcgaggatgccgtgaacaggtggggaaccgtatcgaagttttttcctttttcttccattatccatgatatcgcctataatcttgatcagtacggtttcgcttgcttggctgaaattagggtatttttattttttacctgtactgattccagcattagcattcgagatgaatttgttgcctattcttgcttgtttggattgtttgccgtttctggggttccaattgatgattaaaaattgggaacatctaagaaatgttaagtaatttccattttatttggtggattgtgcatgttgttacatgctaatgcttggaactctggaaaaacacatcaaacaaaattgtccaaaaaagtgaatactaggactggagaaccagggcaacgttttttcctggtcaaggtcttgttgtgcatatttcagaaaacaaaatcaagagtaaacacatacaaggtctatataaacagacagcacaatcaaaaaattctatgagcacaggcagatatagcagttcccttttcccgatggttcaaattaaatgaatataaacaaatacagctccactgtttaatgcttagcaacctgttgaagctaacagcaaggcaggttcagaatttcaggtatattactgtagaacaaaactggatataccaaaagtgatcaacaaggcaaattcccacaaaagcagctaaaaggttaacaaaaattatttgcagtcgcgcacatactacaggagacaatgacaaagatcctcctcttagccctcccttcacaagcttgacctaatctaccgaattggcaagcatgtatctaaacaatcaatttcataccctggatgtggatcatgagtgaaactcacattgcaaagattaggaccagtatagcacgaattgctggttatcttttagggctatagtccttgattagttttgattcatatatatttaatattttattaatgtggcatactttagtttctggacttatattaagttgtaattacgactagattttccatgagtggtttcatggattgctttatcgtaggtttgctatagaatgtttgtgctactgataaggatgtctttgcaacttctccagtcatccttaacctttctttttcataatccattctttttttctgtgactaattttcttctactgattctgttattataagcaaagcatgaagtccaagcaatcatgagttatgcaacataaatgaagttgaatagacaaaaccacatactcattctttaagatggcaattttttccttctttccattcagtgataaatgctaacgttcacagtactgttactagtttttccaagtaattctgtcagtggtcaggtggattaggtggcgtgcatctcttattaaggtcaatactttatttacttcattgcgactatttttatattttactccaaaatcataaaaaagtgttaatacttgaatcataagttagttgtgtaacttttgaaagtttgttggctgacaactgctgaaattctgtttgtagtttcagtatctgtttttccaatgctggccgttttcttgatctgaaaggtttagtactttcttgttgtaaccaatccttagggttttgctgatcatattatactgtttcgtcgtgtgtctgagggatgataatatatacgtaccaagaagatggcattaggatcatcggaaatgaggggtggaaatgaaaaggggggttcgggggatctcctatccctgttatgacttaggaggaaaaggaagagaagtgggttttgatttgggatttgggacaaaaatgagttcttttttcatgattctaaagcctaaacacaatggaatgtgtgtttggttgggtggttgggctgtggaaaaagagcatcagcacctttttactcacctattgagcattagcgtgatgtctctgctgttgacacccattcactgggcctgttgctctgtgggttgttctgttgtcggtagccatcggctgaagacccaccttcatgaatcatccccttgagttcattttgactctgagatactcgccatctgatttcctaggcgagatggcgtgaagaattgatacaggatcgtcgtttctttgccagctgcgcatccattcagccggtcgtattcctaattaatgttgctgctaatctcgactgctctcgctccttgatctggtcttcttttctgtgatttccttttacttttattttccgaaccaaaataagtggagtgattacaaaatatgggaagagaattaaacatcaacacctatagacccagactgccaaacccagtcttttgtatcctactccatatgcttttcctaaacccatcacctatccaaatgtcactaaagagtgattagtatagcaggagtgaagccctatttcctcatggcatatgggcctacaactcttaacactgcataatacattaaacaactgataagtctgataaatcatttagtaaagaatattacactaacagttatgtcaaaacaaaaatctgttgacctgtaaattcttctgggccattatcccaacaatagccttgtatgctttgaaggggtagcctcgtgatagaagaaagacactcttcactggtgatatcacatgcaaggatgcaaaggagtgcagccaagagtgttgtgatgaaatagctcatcgaatcatgatcaaacattttagttgtgatgcagaaattctttatgtgctgagtatggtgggggtccccaatgtgggtagaccatctcacctgtctcatccaattctctttttcctgtatgggtgcacttcatcaactgtcagtgaaaatacaactatgggaatcaatgattttcactttacatgtcagagaattcaattatataaatccttctgacaggataatgttaacaaccattctttcaagaacatttttcatcttagatattttcaaatatgccatgtttgagcataagttctgaattggcagataacttggattgagtttatttgctcaaatgtgcggtttcaatacttttagattatttgatcgcttcatgacatctgaagttactgataccatcttatgtattgtgcatactaggctactaccctaccatgtggttgctgactatgaggctgaagaagatgacagaatccttgacagtgatacaactggacagattccttcgcgcctgcagcaatgggatcataacattctggtcaaaattgctgagttcacaactacttttgagaaacaagttttggcgtacaatataatgaccaagaaaagagccatcggcgagttcagatcagaggagcggctcatgctggagcaggctttgttaatggaggaaaagcaagctatgatggggctaagagcagagatagaatcaagggagaaagcaggtcgtgaggctgctgaagctaagatgcgtatggcaatggctgaacaagctcgagcggaggcccaagcgcactcggagatgataggtcatggccctttgagggcccatgctgcagcgtcccaaggcgaagatggccctagtcatgagatgatgcaagagcaaggtgaagatggatggggaaatgctcaaagggacgatgaagatccatctgaagatttccttaatgatgaaaatgaacctgagaatgggaactctgatatgcaagaggactggcgcagatcaggagaactcgatctgaactctaggtaagattggtgagctggctgagattgtgggggaaaaataagaaccatgaaagtaggtgaaggcatgcgttacatctgccaataacttttatctctagttaagtacttaactggttgtatgatccgaggttaagttagctgcctttgtggctgtaagctcgtgattttaagctacctgttagctgccctgttgttaaacagcgtgcagaatgttgtgatagcctcttttgtttcacttcactctgtttttttaagatgcgttgttaggatgttg</dnaseqindica>|
| + | ==Labs working on this gene== |
| − | Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001073274.2 RefSeq:Os12g0465700]|
| + | * Graduate School of Agricultural and Life Sciences, University of Tokyo, Tokyo, 113-8657, Japan |
| − | }}
| + | * RIKEN Plant Science Center, Tsurumi, Yokohama, 230-0045, Japan |
| − | [[Category:Genes]] | + | |
| − | [[Category:Japonica mRNA]]
| + | ==References== |
| − | [[Category:Oryza Sativa Japonica Group]] | + | <references> |
| − | [[Category:Japonica Genes]]
| + | * <ref name="ref1"> |
| − | [[Category:Japonica Chromosome 12]] | + | Itoh J, Hibara K, Kojima M, Sakakibara H, Nagato Y. Rice DECUSSATE controls |
| − | [[Category:Chromosome 12]]
| + | phyllotaxy by affecting the cytokinin signaling pathway. Plant J. 2012 |
| | + | Dec;72(6):869-81. PubMed PMID: 22889403. |
| | + | </ref> |
| | + | </references> |
| | + | |
| | + | ==Structured Information== |
| | + | [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 12]] |
