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| − | Please input one-sentence summary here.
| + | The rice '''''Os04g0566400''''' was reported as '''''OsIDD10''''' in 2013 <ref name="ref1" /> by researchers from Korea. |
| | | | |
| | ==Annotated Information== | | ==Annotated Information== |
| | + | ===Gene Symbol=== |
| | + | *'''''Os04g0620000''''' '''<=>''' '''''OsIDD10,IDD10''''' |
| | ===Function=== | | ===Function=== |
| − | Please input function information here.
| + | * '''''IDD10''''' is a transcriptional activator involved in nitrogen regulatory circuits that control a broad spectrum of gene expression, which might influence root growth in rice. |
| − | | + | * '''''IDD10''''' directly activates many ammonium-inducible genes that participate in carbon, nitrogen, and phytohormone metabolic pathways. |
| − | ===Expression===
| + | * '''''IDD10''''' is involved in at least some of the regulatory circuits that co-ordinate the transcriptional induction of N-linked genes, which eventually leads to root development. IDD10 could serve as important genetic material to explore the relationship between the regulation of ammonium-responsive genes and root development, a field that is largely unexplored. |
| − | Please input expression information here.
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| − | | |
| − | ===Evolution===
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| − | Please input evolution information here.
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| | | | |
| | You can also add sub-section(s) at will. | | You can also add sub-section(s) at will. |
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| | ==Labs working on this gene== | | ==Labs working on this gene== |
| − | Please input related labs here.
| + | * Division of Applied Life Science (BK21 Program); Plant Molecular Biology and Biotechnology Research Center (PMBBRC); Gyeongsang National University; Jinju, Korea |
| | | | |
| | ==References== | | ==References== |
| − | Please input cited references here.
| + | <references> |
| | + | * <ref name="ref1"> |
| | + | Xuan YH, Priatama RA, Kumar V, Han CD. Regulatory role of indeterminate domain |
| | + | 10 (IDD10) in ammonium-dependent gene expression in rice roots. Plant Signal |
| | + | Behav. 2013 May;8(5):e24139. doi: 10.4161/psb.24139. Epub 2013 Mar 7. PubMed |
| | + | PMID: 23470720; PubMed Central PMCID: PMC3906431. |
| | + | |
| | + | </ref> |
| | + | |
| | + | </references> |
| | | | |
| | ==Structured Information== | | ==Structured Information== |
| − | {{JaponicaGene|
| + | [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 4]] |
| − | GeneName = Os04g0566400|
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| − | Description = Zinc finger, C2H2-type domain containing protein|
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| − | Version = NM_001060115.1 GI:115459959 GeneID:4336689|
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| − | Length = 7089 bp|
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| − | Definition = Oryza sativa Japonica Group Os04g0566400, complete gene.|
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| − | Source = Oryza sativa Japonica Group
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| − | | |
| − | ORGANISM Oryza sativa Japonica Group
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| − | Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
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| − | Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
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| − | clade; Ehrhartoideae; Oryzeae; Oryza.
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| − | |
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| − | Chromosome = [[:category:Japonica Chromosome 4|Chromosome 4]]|
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| − | AP = Chromosome 4:28807408..28814496|
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| − | CDS = 28808135..28808360,28809699..28810104,28812615..28813200|
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| − | GCID = <gbrowseImage1>
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| − | name=NC_008397:28807408..28814496
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| − | source=RiceChromosome04
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| − | preset=GeneLocation
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| − | </gbrowseImage1>|
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| − | GSID = <gbrowseImage2>
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| − | name=NC_008397:28807408..28814496
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| − | source=RiceChromosome04
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| − | preset=GeneLocation
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| − | </gbrowseImage2>|
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| − | CDNA = <cdnaseq>atggcatcgaattcatcggctgcagctgcggcggcgttcttcgggattagcagggatggggaccagcatgaccagattaagccgctgatatcacaccaacagcaccagcaccagcagcagcagctggcagcgtcactgaccggcgtggcaacagcggcgcctactgcggcgtccagccaaggcgcaccgccggcggcgccaccggccaagaagaagagaaatctaccagcagacccggacgcggaggtgatagcgctgtcgcccaagacgctgctggcgacgaaccggttcgtgtgcgaggtgtgcaacaagggattccagcgggagcagaacctacagctgcaccggcgaggccacaacctgccgtggaagctgaagcagaagaacccggcgcaggcgcagcgccgccgcgtgtacctgtgcccggagccgacgtgcgtccaccacgacccggcccgcgccctcggcgacctcaccggcatcaagaagcacttctgccgcaagcacggcgagaagaagtggaagtgcgacaagtgctccaagcgctacgctgtccagtccgactggaaggcccactccaagatctgcggcacccgcgagtaccgctgcgactgcggcaccctcttctccaggagggacagcttcatcacgcacagggcgttctgcgacgcgctggcgcaggagagctccaggctgccgccgacgagcctcagcagcctcaccagccacctgtacggcgccagcaacgccgggaacatggcgctcagcctctcccaggtgggctcccacctcaccacctcgctccaggacggcggcggccaccaccaccacccgtcccccgagctgctccgcctcggcggcgcgggcggtggcggcggggccggcggcgggagcagcatcgccgcgcggctcgaccacctgctgtcgccgtcgggcgcgtctgccttccgccccccgcagccggcgttcttcctcaacgccgccgcggcggcggcggcgactgggcaggatttcggcgacgacgctggcaatgggcagcactcgttcctgcaggccaagccgttccatggcctcatgcagctgcccgacctccagggcatggcgccgggggccccggcgcgccgggacctaacctcttcaacctcggcttcttcgccaacaacggcaacagctcggggtctagccatgagcatgccagccagggctgatgagcaatga</cdnaseq>|
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| − | AA = <aaseq>MASNSSAAAAAAFFGISRDGDQHDQIKPLISHQQHQHQQQQLAA SLTGVATAAPTAASSQGAPPAAPPAKKKRNLPADPDAEVIALSPKTLLATNRFVCEVC NKGFQREQNLQLHRRGHNLPWKLKQKNPAQAQRRRVYLCPEPTCVHHDPARALGDLTG IKKHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKICGTREYRCDCGTLFSRRDSFITH RAFCDALAQESSRLPPTSLSSLTSHLYGASNAGNMALSLSQVGSHLTTSLQDGGGHHH HPSPELLRLGGAGGGGGAGGGSSIAARLDHLLSPSGASAFRPPQPAFFLNAAAAAAAT GQDFGDDAGNGQHSFLQAKPFHGLMQLPDLQGMAPGAPARRDLTSSTSASSPTTATAR GLAMSMPARADEQ</aaseq>|
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| − | DNA = <dnaseqindica>728..953#2292..2697#5208..5793#aggggagagagaagagagagtgaggttgttgttgcatctatatgttttttggtttgtgaattttttaatatctctctgtgtgtgtttgtgtcatatatgagtttgtgggtgtgggtgtttgcgagcttttgttcgtatgcttttttacttgttttgagtgcaactgtttgtttggatttccctgtccactttgttcttttgttaatctgcggaagagtcctagagcggccgaggccttggagtttttctcggcttcttgtcgatttgtttgttgtttcagatcaattcattccaagtgaatacatatgagataggtatagccagccattactcctcagggatttttttgggggcgtctccttccgctctttccctttggttcttttcgtcctacctccttaatttgtcatctcgggggagcagaaatctttcctgatcttcctcccatggttgctgctttcctgctttgcctttgcttggttgcttgtgttgtgtgctgtgctgtgcagtggcgatgactgctttgctgctgctgttcttaattgctgcatgccatgtctcacttggaaagtatttttttgctttgctttgtttgtttgtttcagccaggggggaagaaggaaggaagaagaagaacactgctgccaatccgaggaacaatccaacgggggcaacagaaaaggaaattttctgctcctgcggttgagttggtaaaatttgggaggtgatggcatcgaattcatcggctgcagctgcggcggcgttcttcgggattagcagggatggggaccagcatgaccagattaagccgctgatatcacaccaacagcaccagcaccagcagcagcagctggcagcgtcactgaccggcgtggcaacagcggcgcctactgcggcgtccagccaaggcgcaccgccggcggcgccaccggccaagaagaagagaaatctaccaggcaatccatccaaccaacccaagtacccttttacgatttcagccatgcatgcatacatatctgttctccgagatcttgtctcgattgattggagtcttatcatttgttttctgacagtgaaagcatcttatcgatctcacaggcgcgcttgatgattttctttttctctctctatctagtctctatacttaattgttgcatctgttctttggtttcttgcttccgaaatatcattcctcatcagtgctgaattgcctgtttcttttttatgtagactgaattttgtgaactggttctttgtctttttgtttttttacccagttcgtacttcgtcatctatcttttccttattccatttcttcagtctggaatctggatcccttccctaccatgcatctaggcgtctaccagttcaataaaagcgaatagacatgaacaacttggctttcatcagtttgctcctagtacttcatttaaagctctgtactgtcacctgaaagaaagagaattaattcaggtgaagaatacagaaagtactccgtctttcatggttaaactattcttttttttcccttgtcaaggagtatcgatctcttgcgttttagttagatcaatcagtagtcccagaattcccagttcttccatgagaagttttaagagcatgggcatagttccatatatttcgcaagataaaacaaaatcagttcatttttcaagattccatgcatgtacatgagctgttatcctcttcagtagtatagatcaatattcttttttcttcccccaattatgagaagcaaataggagccatggcacacaatccatgtctattcccttgttctctatatctcttcaagcaaagttcttttttcctaaaatctcatgcaaatattcccttctccatggtctagtttgtctctacctctcagccccaccaacagaaagaaaaaaaaacatcttccccaaattaatccatcatcagtactagctcccaccaccattagttaatcatgcatgcctaacttataagcaaacaaatccaatatagataattgtcgtgagataattaagacccatacttgtgataatatatcccttcatcgcgactactgttcgatatgcctctttcctaatccacacaaaatgttgacgactgccactacctccattaactccatgcttgtgtgtaaaatggatgcattgtttaatttctttgcaaagtgtcacgcacatatacatatatctgaagcgaaatgtaatatacacattgatcatcaaggaattaatgagctgattaactgaactttgtgtgtcttagtactggtttttgattttcagcagacccggacgcggaggtgatagcgctgtcgcccaagacgctgctggcgacgaaccggttcgtgtgcgaggtgtgcaacaagggattccagcgggagcagaacctacagctgcaccggcgaggccacaacctgccgtggaagctgaagcagaagaacccggcgcaggcgcagcgccgccgcgtgtacctgtgcccggagccgacgtgcgtccaccacgacccggcccgcgccctcggcgacctcaccggcatcaagaagcacttctgccgcaagcacggcgagaagaagtggaagtgcgacaagtgctccaagcgctacgctgtccagtccgactggaaggcccactccaagatctgcggcacccgcgagtaccgctgcgactgcggcaccctcttctccaggtacccgatctccctctccttcatgctgcactgcaaatgctccatatatatacattgccgtcgtcagtgtgcgtcgccatatataggctttcgcatggcctctgatcgattcatcagatcacctgcttgctggatgtgttcggtgagcggagtaaagtagtaaacaagggtgtggccggctactgttgtgtagtgcgtttggtttgtttctttagggttagggtttttgtttgggcgtgcacagtgggtggcatggctgttagttcgttcgtgcgatcgagctagtggccgcgtctagctaagcctgaggaaggaggaggaagatgcaccggcgatggagaactgctcgcacgtgaaatggcattcttataaaaaaccattttttcttttcttctcctctctttttgtcctttggcatttgctcacaagaccctcatacttggcttttctctcccttgggaagctggaaccagcaactcttcttctctctctctctctctctagccaaaagcttggtatgtgtaagcattctgttacactgtcctgtgggcccgcatttatcatgggccagcgtgtcagtagcagtccagttgtaaggaggagcggcaatgcaggccggcttcctctctcctgtctacagttttctcttctcactctctctctactgaatcacttggctgccatgtaagcctagcttgttctcatgtgagttggctggctagctagatgtggcagaaccgttctttggccgtggcagtgagccaggcttggccaggggccacgcaccttttcatggatacgttgcaaacgcccggccctcacatatatctcatcactcatcaggcaccaactaggtgtaacttttaggaactcttcatttattgatggaattaaacaggcgtgttcaatgctggctagtggtcactcctacttcttctttcatgagtttggcaaaaaattctccaatagggagttgacacatttagaattagagtatcaacaggagttgcattgatgagccttcgtgttgagtttgttcactgtttctgcaaaaaggaatccattcatgcatgtgtgtgagtgattttgggttcctgaaaaggggcacaggaattctaggctcatgtagagttttttgttgttagtgtatgacctactttagcattcttttttcctagtaggagtagtaattgttttgtgaaaactatggtcatttcggacaggtgaatgagctctactttagcaatctttttcctaggagtagtagttgttttgtgagaactatggtaatttcggacaggtgaatgagctcgatcatatatagcatttcaagtggaattgatggaccccttgctatataggagtataatttttttagggatcttttaataccttgcatctataccctctcatcttcagattcttataaaatttctgggtggggcgcaaccaagcactggtttgaaccatttgttcaatttcatatcacagctcaattttttttatgttcatatgattttcaactgcaatcgtatcagtcctcaagctttttctttttccttgtgtgttggtttctagggaagtgagcttaccagcccacaaagttttctgatctccttggtgtgtgtgttggtgtgcatgacaacgtctgatgtctatgtcttcctggcttaaaacagtttccccttcctggctttctcttttgaagcttcctactagtgggaacctatgagcggcacatcacggcaagctaggatgagatttacctccttttttacgctccctttgattgacatgggtttctgggatcttgggctagcttttgtgcgtgggttgcatacctctctgcatgcatggatacctaacacccttgacaaaaagtggtactagttcgttcttctcctttttgaacaaacaagtatgaattgtcaaaccctatcctttactagtagtagcatcattaatgatttcaggaagtaatatgacatctttttttaacttagataatgtgagttaataatttgacgtggtgtggaacatttttaattaccagtagctacagaaaggggggaatgcatgcacagccctgtagaaagtaaagttactgttcaggttcatgaaaacaacagctgcaaacacaacattcagcggcacaggctcgcagcacccagttgcagcagtgcagcgctcacatgctgaccagaaaacaataacttaacccgagatgccgctcctcctcctcctcctcctcggtgtgcgcgccgcccatgcacggccgtctcttgcaagctgcggctgcagctgctactgctagcacctctcacatcaactttttactgttcacttttactgcacactcgagagctcgttgtcatgcatggcaatgtcacggcatgcagaggtcgagtagagggatcactggatcaagttgcactctaacctaagattttttttttctttttgttttgttttgctgaatgcttgtgtactcgtgtccatggcgcgtgcaggagggacagcttcatcacgcacagggcgttctgcgacgcgctggcgcaggagagctccaggctgccgccgacgagcctcagcagcctcaccagccacctgtacggcgccagcaacgccgggaacatggcgctcagcctctcccaggtgggctcccacctcaccacctcgctccaggacggcggcggccaccaccaccacccgtcccccgagctgctccgcctcggcggcgcgggcggtggcggcggggccggcggcgggagcagcatcgccgcgcggctcgaccacctgctgtcgccgtcgggcgcgtctgccttccgccccccgcagccggcgttcttcctcaacgccgccgcggcggcggcggcgactgggcaggatttcggcgacgacgctggcaatgggcagcactcgttcctgcaggccaagccgttccatggcctcatgcagctgcccgacctccagggcatggcgccgggggccccggcgcgccgggacctaacctcttcaacctcggcttcttcgccaacaacggcaacagctcggggtctagccatgagcatgccagccagggctgatgagcaatgaccagttcagctgtggtgcaggcggcggcggcggtctgacgcgtcggcggcgggatctccggcggtaacttcgttggtggcgaccatgtttctcctgcagagctctacaacgatcaagcggcgatgctgccgcagatgtcggcgaccggctctcctccagaaggcggcgcagatgggcgcgacgtcgagcgcgaacggcccgggctccatgttccgtggcttcgtcggctcgtcgccgcacatgcggccggcggcgcagcacatggaccagagcgacgcgcacctcaacgacctgatgaactccctcgccggcggcggcgtcaacgccgccgccatgttcggcggcaccaacggcggcggcgtccctggcgcggggatgtttgatccgaggctgtgcgacatcgagcacgaggtgaagttcagccagggcggcggaggcggaggcggcgccggcgccggcaccggcgacgggacgcgggatttcctcggcgtcggcggtggcggcatcgtccatggcatgtcgacgccgagaggagaccaccaccagagcagcagcgacatgagctccttggaggccgagatgaagtccgcatcgtccttcaacgggagaaggatgccatgaatccaccatgatcaagtcatcgatcgagcttacacaagccgtcaagctccgatcgatcggtagtagtaccaagtgagagtctgagacttgaagcaatgcaactgcaactctgggggattaacgcatgcgcgcatgaattggggaggagcaagctaaggttatagtatactcatcatatatagcctaatgtcgagttagcaactaagtttgatcgatcgcatgagctggtgtgcaagcatgcatgggataaaagctatactaagctagctcttcaagcatatcatgacctggaaaacttggggtttagtcaggaagagaggcgtcctctctgactaattaagtaattaaggctagtgcgagtggacgcgtgtgatgacccttgttgctctcggtggggttggtgttaatgccgttgctattgttcttgttgtttgttttcacctccttgtagttggatccttgttgggttaagtatagttccatagagccaataagaatgttcaatttgtagctagctcaatgggggaaagagagtggcttaatttcccctcgttctcttcctctcttttttttccctttcaatttcttgtttttattaattaattactgttccttgtagcaaaaaaaaccatatattgccctgcaaagtgcaattgatcatgttggctcaaatgc</dnaseqindica>|
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| − | Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001060115.1 RefSeq:Os04g0566400]|
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| − | }}
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| − | [[Category:Genes]] | |
| − | [[Category:Japonica mRNA]]
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| − | [[Category:Oryza Sativa Japonica Group]] | |
| − | [[Category:Japonica Genes]] | |
| − | [[Category:Japonica Chromosome 4]]
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| − | [[Category:Chromosome 4]]
| |
