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| − | {{JaponicaGene|
| + | The rice '''''Os04g0566400''''' was reported as '''''OsIDD10''''' in 2013 <ref name="ref1" /> by researchers from Korea. |
| − | GeneName = Os04g0566400|
| |
| − | Description = Zinc finger, C2H2-type domain containing protein|
| |
| − | Version = NM_001060115.1 GI:115459959 GeneID:4336689|
| |
| − | Length = 7089 bp|
| |
| − | Definition = Oryza sativa Japonica Group Os04g0566400, complete gene.|
| |
| − | Source = Oryza sativa Japonica Group
| |
| | | | |
| − | ORGANISM Oryza sativa Japonica Group
| + | ==Annotated Information== |
| − | Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
| + | ===Gene Symbol=== |
| − | Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
| + | *'''''Os04g0620000''''' '''<=>''' '''''OsIDD10,IDD10''''' |
| − | clade; Ehrhartoideae; Oryzeae; Oryza.
| + | ===Function=== |
| − | |
| + | * '''''IDD10''''' is a transcriptional activator involved in nitrogen regulatory circuits that control a broad spectrum of gene expression, which might influence root growth in rice. |
| − | Chromosome = [[:category:Japonica Chromosome 4|Chromosome 4]]|
| + | * '''''IDD10''''' directly activates many ammonium-inducible genes that participate in carbon, nitrogen, and phytohormone metabolic pathways. |
| − | AP = Chromosome 4:28807408..28814496|
| + | * '''''IDD10''''' is involved in at least some of the regulatory circuits that co-ordinate the transcriptional induction of N-linked genes, which eventually leads to root development. IDD10 could serve as important genetic material to explore the relationship between the regulation of ammonium-responsive genes and root development, a field that is largely unexplored. |
| − | CDS = 28808135..28808360,28809699..28810104,28812615..28813200|
| + | |
| − | GCID = <gbrowseImage1>
| + | You can also add sub-section(s) at will. |
| − | name=NC_008397:28807408..28814496
| + | |
| − | source=RiceChromosome04
| + | ==Labs working on this gene== |
| − | preset=GeneLocation
| + | * Division of Applied Life Science (BK21 Program); Plant Molecular Biology and Biotechnology Research Center (PMBBRC); Gyeongsang National University; Jinju, Korea |
| − | </gbrowseImage1>|
| + | |
| − | GSID = <gbrowseImage2>
| + | ==References== |
| − | name=NC_008397:28807408..28814496
| + | <references> |
| − | source=RiceChromosome04
| + | * <ref name="ref1"> |
| − | preset=GeneLocation
| + | Xuan YH, Priatama RA, Kumar V, Han CD. Regulatory role of indeterminate domain |
| − | </gbrowseImage2>| | + | 10 (IDD10) in ammonium-dependent gene expression in rice roots. Plant Signal |
| − | CDNA = <cdnaseq>atggcatcgaattcatcggctgcagctgcggcggcgttcttcgggattagcagggatggggaccagcatgaccagattaagccgctgatatcacaccaacagcaccagcaccagcagcagcagctggcagcgtcactgaccggcgtggcaacagcggcgcctactgcggcgtccagccaaggcgcaccgccggcggcgccaccggccaagaagaagagaaatctaccagcagacccggacgcggaggtgatagcgctgtcgcccaagacgctgctggcgacgaaccggttcgtgtgcgaggtgtgcaacaagggattccagcgggagcagaacctacagctgcaccggcgaggccacaacctgccgtggaagctgaagcagaagaacccggcgcaggcgcagcgccgccgcgtgtacctgtgcccggagccgacgtgcgtccaccacgacccggcccgcgccctcggcgacctcaccggcatcaagaagcacttctgccgcaagcacggcgagaagaagtggaagtgcgacaagtgctccaagcgctacgctgtccagtccgactggaaggcccactccaagatctgcggcacccgcgagtaccgctgcgactgcggcaccctcttctccaggagggacagcttcatcacgcacagggcgttctgcgacgcgctggcgcaggagagctccaggctgccgccgacgagcctcagcagcctcaccagccacctgtacggcgccagcaacgccgggaacatggcgctcagcctctcccaggtgggctcccacctcaccacctcgctccaggacggcggcggccaccaccaccacccgtcccccgagctgctccgcctcggcggcgcgggcggtggcggcggggccggcggcgggagcagcatcgccgcgcggctcgaccacctgctgtcgccgtcgggcgcgtctgccttccgccccccgcagccggcgttcttcctcaacgccgccgcggcggcggcggcgactgggcaggatttcggcgacgacgctggcaatgggcagcactcgttcctgcaggccaagccgttccatggcctcatgcagctgcccgacctccagggcatggcgccgggggccccggcgcgccgggacctaacctcttcaacctcggcttcttcgccaacaacggcaacagctcggggtctagccatgagcatgccagccagggctgatgagcaatga</cdnaseq>|
| + | Behav. 2013 May;8(5):e24139. doi: 10.4161/psb.24139. Epub 2013 Mar 7. PubMed |
| − | AA = <aaseq>MASNSSAAAAAAFFGISRDGDQHDQIKPLISHQQHQHQQQQLAA SLTGVATAAPTAASSQGAPPAAPPAKKKRNLPADPDAEVIALSPKTLLATNRFVCEVC NKGFQREQNLQLHRRGHNLPWKLKQKNPAQAQRRRVYLCPEPTCVHHDPARALGDLTG IKKHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKICGTREYRCDCGTLFSRRDSFITH RAFCDALAQESSRLPPTSLSSLTSHLYGASNAGNMALSLSQVGSHLTTSLQDGGGHHH HPSPELLRLGGAGGGGGAGGGSSIAARLDHLLSPSGASAFRPPQPAFFLNAAAAAAAT GQDFGDDAGNGQHSFLQAKPFHGLMQLPDLQGMAPGAPARRDLTSSTSASSPTTATAR GLAMSMPARADEQ</aaseq>|
| + | PMID: 23470720; PubMed Central PMCID: PMC3906431. |
| − | DNA = <dnaseqindica>728..953#2292..2697#5208..5793#aggggagagagaagagagagtgaggttgttgttgcatctatatgttttttggtttgtgaattttttaatatctctctgtgtgtgtttgtgtcatatatgagtttgtgggtgtgggtgtttgcgagcttttgttcgtatgcttttttacttgttttgagtgcaactgtttgtttggatttccctgtccactttgttcttttgttaatctgcggaagagtcctagagcggccgaggccttggagtttttctcggcttcttgtcgatttgtttgttgtttcagatcaattcattccaagtgaatacatatgagataggtatagccagccattactcctcagggatttttttgggggcgtctccttccgctctttccctttggttcttttcgtcctacctccttaatttgtcatctcgggggagcagaaatctttcctgatcttcctcccatggttgctgctttcctgctttgcctttgcttggttgcttgtgttgtgtgctgtgctgtgcagtggcgatgactgctttgctgctgctgttcttaattgctgcatgccatgtctcacttggaaagtatttttttgctttgctttgtttgtttgtttcagccaggggggaagaaggaaggaagaagaagaacactgctgccaatccgaggaacaatccaacgggggcaacagaaaaggaaattttctgctcctgcggttgagttggtaaaatttgggaggtgatggcatcgaattcatcggctgcagctgcggcggcgttcttcgggattagcagggatggggaccagcatgaccagattaagccgctgatatcacaccaacagcaccagcaccagcagcagcagctggcagcgtcactgaccggcgtggcaacagcggcgcctactgcggcgtccagccaaggcgcaccgccggcggcgccaccggccaagaagaagagaaatctaccaggcaatccatccaaccaacccaagtacccttttacgatttcagccatgcatgcatacatatctgttctccgagatcttgtctcgattgattggagtcttatcatttgttttctgacagtgaaagcatcttatcgatctcacaggcgcgcttgatgattttctttttctctctctatctagtctctatacttaattgttgcatctgttctttggtttcttgcttccgaaatatcattcctcatcagtgctgaattgcctgtttcttttttatgtagactgaattttgtgaactggttctttgtctttttgtttttttacccagttcgtacttcgtcatctatcttttccttattccatttcttcagtctggaatctggatcccttccctaccatgcatctaggcgtctaccagttcaataaaagcgaatagacatgaacaacttggctttcatcagtttgctcctagtacttcatttaaagctctgtactgtcacctgaaagaaagagaattaattcaggtgaagaatacagaaagtactccgtctttcatggttaaactattcttttttttcccttgtcaaggagtatcgatctcttgcgttttagttagatcaatcagtagtcccagaattcccagttcttccatgagaagttttaagagcatgggcatagttccatatatttcgcaagataaaacaaaatcagttcatttttcaagattccatgcatgtacatgagctgttatcctcttcagtagtatagatcaatattcttttttcttcccccaattatgagaagcaaataggagccatggcacacaatccatgtctattcccttgttctctatatctcttcaagcaaagttcttttttcctaaaatctcatgcaaatattcccttctccatggtctagtttgtctctacctctcagccccaccaacagaaagaaaaaaaaacatcttccccaaattaatccatcatcagtactagctcccaccaccattagttaatcatgcatgcctaacttataagcaaacaaatccaatatagataattgtcgtgagataattaagacccatacttgtgataatatatcccttcatcgcgactactgttcgatatgcctctttcctaatccacacaaaatgttgacgactgccactacctccattaactccatgcttgtgtgtaaaatggatgcattgtttaatttctttgcaaagtgtcacgcacatatacatatatctgaagcgaaatgtaatatacacattgatcatcaaggaattaatgagctgattaactgaactttgtgtgtcttagtactggtttttgattttcagcagacccggacgcggaggtgatagcgctgtcgcccaagacgctgctggcgacgaaccggttcgtgtgcgaggtgtgcaacaagggattccagcgggagcagaacctacagctgcaccggcgaggccacaacctgccgtggaagctgaagcagaagaacccggcgcaggcgcagcgccgccgcgtgtacctgtgcccggagccgacgtgcgtccaccacgacccggcccgcgccctcggcgacctcaccggcatcaagaagcacttctgccgcaagcacggcgagaagaagtggaagtgcgacaagtgctccaagcgctacgctgtccagtccgactggaaggcccactccaagatctgcggcacccgcgagtaccgctgcgactgcggcaccctcttctccaggtacccgatctccctctccttcatgctgcactgcaaatgctccatatatatacattgccgtcgtcagtgtgcgtcgccatatataggctttcgcatggcctctgatcgattcatcagatcacctgcttgctggatgtgttcggtgagcggagtaaagtagtaaacaagggtgtggccggctactgttgtgtagtgcgtttggtttgtttctttagggttagggtttttgtttgggcgtgcacagtgggtggcatggctgttagttcgttcgtgcgatcgagctagtggccgcgtctagctaagcctgaggaaggaggaggaagatgcaccggcgatggagaactgctcgcacgtgaaatggcattcttataaaaaaccattttttcttttcttctcctctctttttgtcctttggcatttgctcacaagaccctcatacttggcttttctctcccttgggaagctggaaccagcaactcttcttctctctctctctctctctagccaaaagcttggtatgtgtaagcattctgttacactgtcctgtgggcccgcatttatcatgggccagcgtgtcagtagcagtccagttgtaaggaggagcggcaatgcaggccggcttcctctctcctgtctacagttttctcttctcactctctctctactgaatcacttggctgccatgtaagcctagcttgttctcatgtgagttggctggctagctagatgtggcagaaccgttctttggccgtggcagtgagccaggcttggccaggggccacgcaccttttcatggatacgttgcaaacgcccggccctcacatatatctcatcactcatcaggcaccaactaggtgtaacttttaggaactcttcatttattgatggaattaaacaggcgtgttcaatgctggctagtggtcactcctacttcttctttcatgagtttggcaaaaaattctccaatagggagttgacacatttagaattagagtatcaacaggagttgcattgatgagccttcgtgttgagtttgttcactgtttctgcaaaaaggaatccattcatgcatgtgtgtgagtgattttgggttcctgaaaaggggcacaggaattctaggctcatgtagagttttttgttgttagtgtatgacctactttagcattcttttttcctagtaggagtagtaattgttttgtgaaaactatggtcatttcggacaggtgaatgagctctactttagcaatctttttcctaggagtagtagttgttttgtgagaactatggtaatttcggacaggtgaatgagctcgatcatatatagcatttcaagtggaattgatggaccccttgctatataggagtataatttttttagggatcttttaataccttgcatctataccctctcatcttcagattcttataaaatttctgggtggggcgcaaccaagcactggtttgaaccatttgttcaatttcatatcacagctcaattttttttatgttcatatgattttcaactgcaatcgtatcagtcctcaagctttttctttttccttgtgtgttggtttctagggaagtgagcttaccagcccacaaagttttctgatctccttggtgtgtgtgttggtgtgcatgacaacgtctgatgtctatgtcttcctggcttaaaacagtttccccttcctggctttctcttttgaagcttcctactagtgggaacctatgagcggcacatcacggcaagctaggatgagatttacctccttttttacgctccctttgattgacatgggtttctgggatcttgggctagcttttgtgcgtgggttgcatacctctctgcatgcatggatacctaacacccttgacaaaaagtggtactagttcgttcttctcctttttgaacaaacaagtatgaattgtcaaaccctatcctttactagtagtagcatcattaatgatttcaggaagtaatatgacatctttttttaacttagataatgtgagttaataatttgacgtggtgtggaacatttttaattaccagtagctacagaaaggggggaatgcatgcacagccctgtagaaagtaaagttactgttcaggttcatgaaaacaacagctgcaaacacaacattcagcggcacaggctcgcagcacccagttgcagcagtgcagcgctcacatgctgaccagaaaacaataacttaacccgagatgccgctcctcctcctcctcctcctcggtgtgcgcgccgcccatgcacggccgtctcttgcaagctgcggctgcagctgctactgctagcacctctcacatcaactttttactgttcacttttactgcacactcgagagctcgttgtcatgcatggcaatgtcacggcatgcagaggtcgagtagagggatcactggatcaagttgcactctaacctaagattttttttttctttttgttttgttttgctgaatgcttgtgtactcgtgtccatggcgcgtgcaggagggacagcttcatcacgcacagggcgttctgcgacgcgctggcgcaggagagctccaggctgccgccgacgagcctcagcagcctcaccagccacctgtacggcgccagcaacgccgggaacatggcgctcagcctctcccaggtgggctcccacctcaccacctcgctccaggacggcggcggccaccaccaccacccgtcccccgagctgctccgcctcggcggcgcgggcggtggcggcggggccggcggcgggagcagcatcgccgcgcggctcgaccacctgctgtcgccgtcgggcgcgtctgccttccgccccccgcagccggcgttcttcctcaacgccgccgcggcggcggcggcgactgggcaggatttcggcgacgacgctggcaatgggcagcactcgttcctgcaggccaagccgttccatggcctcatgcagctgcccgacctccagggcatggcgccgggggccccggcgcgccgggacctaacctcttcaacctcggcttcttcgccaacaacggcaacagctcggggtctagccatgagcatgccagccagggctgatgagcaatgaccagttcagctgtggtgcaggcggcggcggcggtctgacgcgtcggcggcgggatctccggcggtaacttcgttggtggcgaccatgtttctcctgcagagctctacaacgatcaagcggcgatgctgccgcagatgtcggcgaccggctctcctccagaaggcggcgcagatgggcgcgacgtcgagcgcgaacggcccgggctccatgttccgtggcttcgtcggctcgtcgccgcacatgcggccggcggcgcagcacatggaccagagcgacgcgcacctcaacgacctgatgaactccctcgccggcggcggcgtcaacgccgccgccatgttcggcggcaccaacggcggcggcgtccctggcgcggggatgtttgatccgaggctgtgcgacatcgagcacgaggtgaagttcagccagggcggcggaggcggaggcggcgccggcgccggcaccggcgacgggacgcgggatttcctcggcgtcggcggtggcggcatcgtccatggcatgtcgacgccgagaggagaccaccaccagagcagcagcgacatgagctccttggaggccgagatgaagtccgcatcgtccttcaacgggagaaggatgccatgaatccaccatgatcaagtcatcgatcgagcttacacaagccgtcaagctccgatcgatcggtagtagtaccaagtgagagtctgagacttgaagcaatgcaactgcaactctgggggattaacgcatgcgcgcatgaattggggaggagcaagctaaggttatagtatactcatcatatatagcctaatgtcgagttagcaactaagtttgatcgatcgcatgagctggtgtgcaagcatgcatgggataaaagctatactaagctagctcttcaagcatatcatgacctggaaaacttggggtttagtcaggaagagaggcgtcctctctgactaattaagtaattaaggctagtgcgagtggacgcgtgtgatgacccttgttgctctcggtggggttggtgttaatgccgttgctattgttcttgttgtttgttttcacctccttgtagttggatccttgttgggttaagtatagttccatagagccaataagaatgttcaatttgtagctagctcaatgggggaaagagagtggcttaatttcccctcgttctcttcctctcttttttttccctttcaatttcttgtttttattaattaattactgttccttgtagcaaaaaaaaccatatattgccctgcaaagtgcaattgatcatgttggctcaaatgc</dnaseqindica>|
| + | |
| − | Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001060115.1 RefSeq:Os04g0566400]|
| + | </ref> |
| − | }}
| + | |
| − | [[Category:Genes]] | + | </references> |
| − | [[Category:Japonica mRNA]]
| + | |
| − | [[Category:Oryza Sativa Japonica Group]] | + | ==Structured Information== |
| − | [[Category:Japonica Genes]]
| + | [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 4]] |
| − | [[Category:Japonica Chromosome 4]] | |
| − | [[Category:Chromosome 4]]
| |
