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| − | {{JaponicaGene|
| + | The rice '''''Os02g0152500''''' was reported as '''''OsVIL2''''' in 2013 <ref name="ref1" /> by researchers from Korea, the USA, China. |
| − | GeneName = Os02g0152500|
| |
| − | Description = Fibronectin, type III-like fold domain containing protein|
| |
| − | Version = NM_001052453.1 GI:115444276 GeneID:4328327|
| |
| − | Length = 5617 bp|
| |
| − | Definition = Oryza sativa Japonica Group Os02g0152500, complete gene.|
| |
| − | Source = Oryza sativa Japonica Group
| |
| | | | |
| − | ORGANISM Oryza sativa Japonica Group
| + | ==Annotated Information== |
| − | Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
| + | [[File:111-Os02g0152500.png|right|thumb|427px|'''Figure S2.''' ''Spikelet phenotypes of osvil2-1, osvil2-2 and osemf2b.<ref name="ref1" />.'']] |
| − | Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
| + | ===Gene Symbol=== |
| − | clade; Ehrhartoideae; Oryzeae; Oryza.
| + | *'''''Os02g0152500''''' '''''<=>''''' '''''OsVIL2,VIL2''''' |
| − | |
| + | ===Function=== |
| − | Chromosome = [[:category:Japonica Chromosome 2|Chromosome 2]]|
| + | * '''''OsVIL2''''' functions with PRC2 to induce flowering by repressing OsLFL1 in rice |
| − | AP = Chromosome 2:2876559..2882175|
| + | * '''''OsVIL2''''' contains a plant homeodomain (PHD) finger, which is a conserved motif of histone binding proteins. |
| − | CDS = 2877242..2878479,2878557..2878861,2879862..2880549,2881998..2882016|
| + | * '''''OsVIL2''''' is bound to native histone H3 in vitro. |
| − | GCID = <gbrowseImage1>
| + | * '''''OsVIL2''''' physically interacts with OsEMF2b, a component of polycomb repression complex 2 |
| − | name=NC_008395:2876559..2882175
| + | ===Expression=== |
| − | source=RiceChromosome02
| + | * The osvil2 mutants displayed several phenotypic alterations in their leaf angle, tiller number, floret development and flowering time when grown in a paddy field. Leaf angles were increased in the mutants, as previously observed (Zhao et al., 2010). |
| − | preset=GeneLocation
| + | * The mutants also had fewer tillers, with the number decreasing from an average of 17 (in the wild type, WT) to seven or eight (in osvil2). |
| − | </gbrowseImage1>|
| + | * In addition, the mutant displayed an abnormal floret structure: the palea was depressed and the number of empty glumes was reduced (Figure S2). Each mutant spikelet also had an extra lodicule (Figure S2). |
| − | GSID = <gbrowseImage2>
| + | |
| − | name=NC_008395:2876559..2882175
| + | You can also add sub-section(s) at will. |
| − | source=RiceChromosome02
| + | |
| − | preset=GeneLocation
| + | ==Labs working on this gene== |
| − | </gbrowseImage2>| | + | * Crop Biotech Institute, Kyung Hee University, Yongin 446-701, Korea |
| − | CDNA = <cdnaseq>atggatccaccctacgcaggagtacctattgatcctgctaaatgccgattgatgagtgtggatgaaaagcgggaacttgtccgtgaattatcgaagcggccagaaagtgctcctgacaaactgcagtcttggagtcgccgtgaaattgtagagattctttgtgctgatttaggaagggaaaggaagtacactggattatcgaagcagagaatgttggaatatctcttcagagttgtgactggcaaatcatctggtggtggcgttgtggagcatgtgcaagagaaggagcctacccctgaacccaacacagccaaccatcagtcccctgcgaaacggcagcgaaagagtgacaacccatcacgactaccaattgttgcaagcagtccaactacagaaatacccaggccagcaagtaatgctcgcttctgccacaatttagcttgcagagcgactcttaatccagaagataaattttgcagacgctgttcatgctgtatttgtttcaagtacgatgacaataaggatcctagcctctggttattctgtagttcagatcaacccttgcagaaagattcttgtgtattttcgtgccatcttgaatgtgctcttaaggatggaagaactggcatcatgcagagtgggcagtgcaagaaacttgatggtggttattactgcactcgctgtcggaaacagaatgatctgcttgggtcctggaagaaacaactggtgatagctaaagatgctcgccggttggatgtattgtgtcatcggatttttttgagtcataagattcttgtctccacggagaagtacttggttttgcatgaaattgttgacacagcgatgaagaaactggaggctgaggttggtcctatatctggagttgcaaatatgggtcgtggaattgtgagccggcttgctgttggtgctgaagttcagaaactttgtgctcgagcaatagaaaccatggagtctctgttttgtggatctccttctaacttgcaatttcaacgttcacggatgataccatcaaacttcgtaaagtttgaagctataacccaaacatctgtcactgtagttttggatttgggtcctatacttgctcaagatgtaacatgctttaatgtatggcacagagtggcagccacaggctcgttctcatcaagtccaactggcatcatacttgcaccattaaaaacgttagtggtcactcaacttgtgccagctacaagctatatattcaaggtagttgccttcagtaactacaaggagtttggatcgtgggaagccaaaatgaagacaagctgtcagaaggaagttgatctgaagggtttgatgccaggtgggtctgggctagaccaaaacaatgggagcccaaaggcaaacagtggtggtcagtctgatccttcttcagaaggtgtggactcaaataataacactgcggtgtatgctgatctcaataaatcaccagaaagtgattttgaatattgtgaaaatcctgagatacttgattcagacaaagcaagtcatcaccccaatgaacctacaaacaactcacagagtatgccgatggtcgtagctagggttacggaggtatctggattggaggaagctcctggactctcagcatcagctttggacgaggagcccaattcagcagttcaaacacaattacttagagaatcctcaaattcaatggagcagaaccagagaagcgaagttcctggatcacaggatgcatcaaatgctcctgctggaaatgaggtggtgattgttccacctcgatattctggctctattccaccaactgcacctagatatatggaaaatggtaaggatatcagtgggaggagcttgaaagcaaaacctggtgataacatccttcaaaatggctcttccaagcctgaaagggaaccagggaattcttcaaataaaagaacatcaggtaaatgtgaggaaatcggccacaaggatggatgcccagaagcatcttatgagtactgtgttaaggtggtcaggtggctggaatgtgagggttacattgagaccaacttcagagtgaagtttctgacttggtatagccttcgtgctacccctcatgacaggaagatagtcagcgtctacgtaaacactcttattgatgatcctgttagcctttctggccagcttgctgacactttctctgaggccatctacagcaaaaggccaccttctgttcgctccggtttctgcatggaactttggcattaa</cdnaseq>|
| + | * Department of Life Science, Pohang University of Science and Technology, Pohang 790-784, Korea |
| − | AA = <aaseq>MDPPYAGVPIDPAKCRLMSVDEKRELVRELSKRPESAPDKLQSW SRREIVEILCADLGRERKYTGLSKQRMLEYLFRVVTGKSSGGGVVEHVQEKEPTPEPN TANHQSPAKRQRKSDNPSRLPIVASSPTTEIPRPASNARFCHNLACRATLNPEDKFCR RCSCCICFKYDDNKDPSLWLFCSSDQPLQKDSCVFSCHLECALKDGRTGIMQSGQCKK LDGGYYCTRCRKQNDLLGSWKKQLVIAKDARRLDVLCHRIFLSHKILVSTEKYLVLHE IVDTAMKKLEAEVGPISGVANMGRGIVSRLAVGAEVQKLCARAIETMESLFCGSPSNL QFQRSRMIPSNFVKFEAITQTSVTVVLDLGPILAQDVTCFNVWHRVAATGSFSSSPTG IILAPLKTLVVTQLVPATSYIFKVVAFSNYKEFGSWEAKMKTSCQKEVDLKGLMPGGS GLDQNNGSPKANSGGQSDPSSEGVDSNNNTAVYADLNKSPESDFEYCENPEILDSDKA SHHPNEPTNNSQSMPMVVARVTEVSGLEEAPGLSASALDEEPNSAVQTQLLRESSNSM EQNQRSEVPGSQDASNAPAGNEVVIVPPRYSGSIPPTAPRYMENGKDISGRSLKAKPG DNILQNGSSKPEREPGNSSNKRTSGKCEEIGHKDGCPEASYEYCVKVVRWLECEGYIE TNFRVKFLTWYSLRATPHDRKIVSVYVNTLIDDPVSLSGQLADTFSEAIYSKRPPSVR SGFCMELWH</aaseq>|
| + | * Department of Horticulture and Landscape Architecture, Purdue University, West Lafayette, IN 47907, USA |
| − | DNA = <dnaseqindica>3697..4934#3315..3619#1627..2314#160..178#gagagataactagcagagcactcgcggaggcgaggagagagagagagagagagagaggttggaagaggaggggagagtccacgtgagtgagaggaggaggaggaggaggagatccctctcccgcgcgcatccgcccctctcgccgatccccaattcgccatggatccaccctacgcaggtcggtcagcgccgcccccgcatccgcggttttcgccttgttttttttttttgttgttgttgttgcgtgtgtgtggtggtggtgatggctcaggtctcgcggcggcgtcggggggagctcgatctgtttgttccggcgacgaatccgctgttccggcggtgtaattgcgggcttggtggtggaggaggaggaatttgtgggcgtggattttagggtgggaggcggtttttttttttttggggggggggtggtgtagtgttcgtcgagatttagactttttgtgtggatggatggatgggttagattatgcgcgcgtggattagattgcggcggtagagggtttgtactgttcattgattggtttgttgggttgatttggagctgtagctgatgcgtggtagaggggtggaggtggaagcgcgttggggagggtggatggcgatgccgctggtgtcagattcgccgctgcatgcggtgatgggtactcacattgcgccccctctctaccgggggaggtggcagcggagtggttcctgcggctttacgtcgttttcgtgggatttacgtccgcgggcgttggtagcagcagcctatcctcttttgggacgggaaaataatatggcgttaggctgtttgaggcctcctgttcgtgcgttgggtgttgcattggtgctgatttggtgggatcacggctgccgaaggcgggtttgtttgctgttagttgatggtaaggattggctgatacgtcgattatatcttctagaggagctgcgtctacttgcatgtcaaggttaccacgtttaggggttatatgattgatgatagtttctttgtttagtggtccaaaattagaaagactcatttctttttagttttctcgtttcccttagacagtctgtagagagttgactttctgcggctcgtgccagcttcgatagctctagttaacattgcgccttgtggtatcacaactgtgctttgtagttcacatttagtcctatacaatatggtacatgttgatgagcctttaattcttagattattgaccgaatcatcttttttttccgaggttaagacttattctgttgcaatgtgctataattataatttgacttctactccagtaagacagtgtgctactcacattaatttgattcagcatgtcgagaatttaatttcctttggaacgtcattcattgagtttttccttgcacgctaagttactcagtaccgtctcatagttgttctgaagaagagaaagaatgatgccttcaaaatatgtattcttctactggatctaatgaactttaaacctttccattctggactgtaaatatgaatgaacgtctaaatttccttcgttgtttgcttcttgtccgactggattttgtaactatttctgactttatcaaattgataataatagtttccagtgttctcttgtttaggagtacctattgatcctgctaaatgccgattgatgagtgtggatgaaaagcgggaacttgtccgtgaattatcgaagcggccagaaagtgctcctgacaaactgcagtcttggagtcgccgtgaaattgtagagattctttgtgctgatttaggaagggaaaggaagtacactggattatcgaagcagagaatgttggaatatctcttcagagttgtgactggcaaatcatctggtggtggcgttgtggagcatgtgcaagagaaggagcctacccctgaacccaacacagccaaccatcagtcccctgcgaaacggcagcgaaagagtgacaacccatcacgactaccaattgttgcaagcagtccaactacagaaatacccaggccagcaagtaatgctcgcttctgccacaatttagcttgcagagcgactcttaatccagaagataaattttgcagacgctgttcatgctgtatttgtttcaagtacgatgacaataaggatcctagcctctggttattctgtagttcagatcaacccttgcagaaagattcttgtgtattttcgtgccatcttgaatgtgctcttaaggatggaagaactggcatcatgcagagtgggcagtgcaagaaacttgatggtggttattactgcactcgctgtcggaaacagaatgatctgcttgggtattctccctaaacaactttattatttgcacagttttttttcctgttctgtaactatacgaaattatgttttaattattcctatgcctccagtttttactgccttaagtaatgttaccattatttattgcaacgataactactagaaatatgttagtttgacttttgtgagagttagctttgataatttgcatgcattcttgctttccagccactttgattaccttactgattctgtttttaggattcttcggtgaagatccttgtagtgtcatcatcattggtccaatcatatgatgcatatttctcaattgtgtcttaagaagtgggttggctgcttttgcccttcagcttcatgctttgagcttgtggtctgtgtgcttacttctgcattaagctgaattagtgttggattcttccttctccatctggagtaaatttgtttgctgggataaccctattttcataggttgcgagctgcgaaaacaggctttcgactgcattttggtgtctttgtgttgcattccatagggttcttgtagttcaagtttcagggtatgaaccaagttactaagccagtaaaacttggtgaggcactgaggccaggtggattcaatattttcaaggatgaatagatcatggagaaatgcttagactagtatatgcaaggagtctctaatttgtctgtgcatgtttataagccatttgagtaacctgggaaataggattcattttgaagttttgaactacaagacaagtgattaattgtctttctcaaaagaatctgcttggctattagtatcttgtagtagtaagttttgaaccagttatatgttatttagagttcaagattctttggccagtccagcacaatgcacttaagtaattcaatcaagtttactggcccattttccaaaactatgctcctttcaagagtttggatattgaaacagtaaattagcttgccgagcaatacttgactgtttaatgccttgttcaggtcctggaagaaacaactggtgatagctaaagatgctcgccggttggatgtattgtgtcatcggatttttttgagtcataagattcttgtctccacggagaagtacttggttttgcatgaaattgttgacacagcgatgaagaaactggaggctgaggttggtcctatatctggagttgcaaatatgggtcgtggaattgtgagccggcttgctgttggtgctgaagttcagaaactttgtgctcgagcaatagaaaccatggagtctctgttttgtggatctccttctaacttgcaatttcaacgtaagtttccacgtgcttcacgttagaccacatacatacaaatagtgttgaattctcatgcatatgtgcattttcaggttcacggatgataccatcaaacttcgtaaagtttgaagctataacccaaacatctgtcactgtagttttggatttgggtcctatacttgctcaagatgtaacatgctttaatgtatggcacagagtggcagccacaggctcgttctcatcaagtccaactggcatcatacttgcaccattaaaaacgttagtggtcactcaacttgtgccagctacaagctatatattcaaggtagttgccttcagtaactacaaggagtttggatcgtgggaagccaaaatgaagacaagctgtcagaaggaagttgatctgaagggtttgatgccaggtgggtctgggctagaccaaaacaatgggagcccaaaggcaaacagtggtggtcagtctgatccttcttcagaaggtgtggactcaaataataacactgcggtgtatgctgatctcaataaatcaccagaaagtgattttgaatattgtgaaaatcctgagatacttgattcagacaaagcaagtcatcaccccaatgaacctacaaacaactcacagagtatgccgatggtcgtagctagggttacggaggtatctggattggaggaagctcctggactctcagcatcagctttggacgaggagcccaattcagcagttcaaacacaattacttagagaatcctcaaattcaatggagcagaaccagagaagcgaagttcctggatcacaggatgcatcaaatgctcctgctggaaatgaggtggtgattgttccacctcgatattctggctctattccaccaactgcacctagatatatggaaaatggtaaggatatcagtgggaggagcttgaaagcaaaacctggtgataacatccttcaaaatggctcttccaagcctgaaagggaaccagggaattcttcaaataaaagaacatcaggtaaatgtgaggaaatcggccacaaggatggatgcccagaagcatcttatgagtactgtgttaaggtggtcaggtggctggaatgtgagggttacattgagaccaacttcagagtgaagtttctgacttggtatagccttcgtgctacccctcatgacaggaagatagtcagcgtctacgtaaacactcttattgatgatcctgttagcctttctggccagcttgctgacactttctctgaggccatctacagcaaaaggccaccttctgttcgctccggtttctgcatggaactttggcattaaagagaggggagctcgtaccgttctctttgtaggggagcatattttggtcccattctttcgtagcagatcgttgcattgattcttcattggaaatttcattgaagcggttaacttatacaatctgttcattgctctactttatttgctatgacagtaggtttaatttatccagcaacttatttctgttttttcacttaggagtccatagtttacagttctgttatccgtaccgccatgttggtacagagcatcaagagctgtgctcttttggtcagctttaggaacattctgaaattgccacaagtgtgtgggtacctgaagctctgttgctagctgctgtgagagggagggatgattctcaggatgtaccgggaaacattgggatgaagcaggcttcgtgtcgacactgacgaatccgagctaaccatgccttgtcaggataaatgatgatgtggtgctgtatctggggttgaaagaaatgcaaatgtgctgctgacttctatggggaatgggaggagtcctgatgtttttccttttcttaagacaatagatgcaaaatgtctgcactaatgttatgttcggtttagacccttgcttttactgtctcctactgcactttcttgccttctagttctaccgtttgagaagttaaatttatgtgcacatgcaaaaaggtttggacc</dnaseqindica>|
| + | * State Key Laboratory of Plant Genomics and Center for Plant Gene Research, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101, China |
| − | Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001052453.1 RefSeq:Os02g0152500]|
| + | * Department of Biochemistry, University of Wisconsin, Madison, WI 53706, USA |
| − | }}
| + | * Department of Plant Molecular Systems Biotechnology, Kyung Hee University, Yongin 446-701, Korea |
| − | [[Category:Genes]] | + | ==References== |
| − | [[Category:Japonica mRNA]]
| + | <references> |
| − | [[Category:Oryza Sativa Japonica Group]] | + | * <ref name="ref1"> |
| − | [[Category:Japonica Genes]]
| + | Yang J, Lee S, Hang R, Kim SR, Lee YS, Cao X, Amasino R, An G. OsVIL2 |
| − | [[Category:Japonica Chromosome 2]] | + | functions with PRC2 to induce flowering by repressing OsLFL1 in rice. Plant J. |
| − | [[Category:Chromosome 2]]
| + | 2013 Feb;73(4):566-78. doi: 10.1111/tpj.12057. Epub 2012 Dec 10. PubMed PMID: |
| | + | 23083333. |
| | + | </ref> |
| | + | </references> |
| | + | |
| | + | ==Structured Information== |
| | + | [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 2]] |
