Difference between revisions of "Os09g0513000"

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(Created page with "{{JaponicaGene| GeneName = Os09g0513000| Description = Similar to TGB12K interacting protein 3| Version = NM_001070182.1 GI:115480106 GeneID:4347554| Length = 3113 bp| De...")
 
 
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{{JaponicaGene|
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Please input one-sentence summary here.
GeneName = Os09g0513000|
 
Description = Similar to TGB12K interacting protein 3|
 
Version = NM_001070182.1 GI:115480106 GeneID:4347554|
 
Length = 3113 bp|
 
Definition = Oryza sativa Japonica Group Os09g0513000, complete gene.|
 
Source = Oryza sativa Japonica Group
 
  
  ORGANISM  Oryza sativa Japonica Group
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==Annotated Information==
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
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===Gene Symbol===
            Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
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*'''''Os09g0513000''''' '''''<=>''''' '''''OsXB25,XB25'''''
            clade; Ehrhartoideae; Oryzeae; Oryza.
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[[File:113-Os09g0513000.png|right|thumb|227px|'''Figure 6.''' ''XB25 is induced by Xoo infection in an Xa21-indpendent manner.<ref name="ref1" />.'']]
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===Function===
Chromosome = [[:category:Japonica Chromosome 9|Chromosome 9]]|
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* The XA21 binding protein '''''XB25''''' is required for maintaining XA21-mediated disease resistance.
AP = Chromosome 9:20614752..20617864|
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* '''''XB25''''' physically interacts, in vitro, with the transmembrane domain of XA21 through its N–terminal binding to transmembrane and positively charged domain (BTMP) repeats. In addition, '''''XB25''''' associates with XA21 in planta.
CDS = 20614916..20614991,20615544..20615662,20615776..20615985,20616070..20616218,20616296..20616467<br>,20617031..20617123,20617230..20617369,20617460..20617559|
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* The downregulation of '''''Xb25''''' results in reduced levels of XA21 and compromised XA21-mediated disease resistance at the adult stage.
GCID = <gbrowseImage1>
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* '''''XB25''''' is required for maintaining XA21-mediated disease resistance.
name=NC_008402:20614752..20617864
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===Expression===
source=RiceChromosome09
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* Xoo infection can alter the expression of a large number of rice genes.  
preset=GeneLocation
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* The researchers monitored Xb25 transcript levels and the '''''XB25''''' abundance in both TP309 and the XA21-expressing line 4021–3 after PXO99 A inoculation.
</gbrowseImage1>|
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* As shown in Figure 6, both RNA transcript and protein levels of '''''XB25''''' are increased 12 h after inoculation in both TP309 and 4021–3 lines, indicating that the expression of '''''Xb25''''' is induced by pathogen inoculation in an Xa21-inde-pendent manner. This elevated expression continues for at least 3 days.
GSID = <gbrowseImage2>
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name=NC_008402:20614752..20617864
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You can also add sub-section(s) at will.
source=RiceChromosome09
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preset=GeneLocation
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==Labs working on this gene==
</gbrowseImage2>|
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* Department of Plant Pathology, University of Florida, Gainesville, FL 32611, USA
CDNA = <cdnaseq>gtaggggcttctccccagtccccaccacacgcgcgtgcgtggccgacgagcaccccaggttcggatcggatggaagaccagaagaaaaatgcaaaaccagaggggtcttctggctcgcaaaggggagctcccccggcacctgatgcaggccttcccaatccttttgatttttctcagtttagcaacttgctcaatgatccatctataaaggagatggcagagcagattgcaagcgaccctgtgttcacccagatggcagagcagctgcagaagagtgctcatgtgaccggggaacagggtggccctgcattggatcctcagcagtacatggaaacaatgacacaagtcatgcaaaaccctcaattcatgtcaatggcagaacgtcttgggaatactcttatgcaggatcctggaatgtccagtatgctcgagagtttgactagtccttctcataaggagctgcttgaagagcggatgtcccgtattaaagaagatccctctttgaaggggattcttgatgagatagagagtggtggtccatctgctatggtgaagtactggaatgaccctgaagttcttcaaaagattggtcaggctatgtcaattaattttccaggagatgctgctacttccactacattgtctggacctgaagaaactgaagaggatggtggagatgatgatgagtccattgtccatcatactgccagtgttggcgatgcggagggtctgaagaaagctttagaggatggagcagacatggatgaagaagacgctgagggaagaagggccttacattttgcgtgtggttacggtgagttgaaatgcgcagagatccttctggaggcaggtgctgctgtaaacgcactggataagaacaagaacaccccactgcattacgctgctggatatggtcggaaagaatgtgtggatcttctgctgaagcatggcgctgctgtcacgccccagaatctggacgggaagacccccatcgaggtggccaagctgaacaaccaggatgaggtcctcaaggtgctcgagatggacgctttcctataa</cdnaseq>|
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* Integrated Plant Genetics, Inc, Alachua, FL 32608, USA.
AA = <aaseq>VGASPQSPPHARAWPTSTPGSDRMEDQKKNAKPEGSSGSQRGAP                    PAPDAGLPNPFDFSQFSNLLNDPSIKEMAEQIASDPVFTQMAEQLQKSAHVTGEQGGP                    ALDPQQYMETMTQVMQNPQFMSMAERLGNTLMQDPGMSSMLESLTSPSHKELLEERMS                    RIKEDPSLKGILDEIESGGPSAMVKYWNDPEVLQKIGQAMSINFPGDAATSTTLSGPE                    ETEEDGGDDDESIVHHTASVGDAEGLKKALEDGADMDEEDAEGRRALHFACGYGELKC                    AEILLEAGAAVNALDKNKNTPLHYAAGYGRKECVDLLLKHGAAVTPQNLDGKTPIEVA                    KLNNQDEVLKVLEMDAFL</aaseq>|
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* UT Southwestern Medical Center at Dallas, 5323 Harry Hines Blvd, Dallas, TX 75390, USA.
DNA = <dnaseqindica>165..240#793..911#1025..1234#1319..1467#1545..1716#2280..2372#2479..2618#2709..2808#aagttctcatcgagggttttcctctctctctctcgcatcgcatccatcccctcgtgtcgccgccggcggaggctgcggcgagccttcaccccccacccgcccaccgccggcgagccacggcgtgggcgacctcctctcctctcccgatcccctctcgcccttaggtaggggcttctccccagtccccaccacacgcgcgtgcgtggccgacgagcaccccaggttcggatcggatggaaggtatgatgatgatttgttctcgtctcggtgatctccctcctcgtcgtccttctccggcgcgtcgctttcgtgagtagatcggagatccgttcgggggttgggggtttgatttggggtttagtgaacaccctccccaatcccacgtagccgcatcgttaggtccgcctcccagtgattatctagattgagatttcgatcttgcagtttatggtgtacagtatttagagtgacaggtcgaggtgaaaggaaattgaatctcccttgctgctgtcgtgagatttaacttgcgtgtggacaggtctaggtgaagggaattcaacttcacctgctgatattataagatctagctttgggtattgctgctttataagaattattagctttttattttttttcatatcaatcaattcgaagtccttcactggtaaagattcttaactcttgagtagtgcttgtgatctggcttatgcgagtagtttgcatcaagcaatgaataaattattctatagcctctgataagctcctctttgtctgcccaattacctttttcagaccagaagaaaaatgcaaaaccagaggggtcttctggctcgcaaaggggagctcccccggcacctgatgcaggccttcccaatccttttgatttttctcagtttagcaacttgctcaatgtaagttcttttttttttcgcgcagctaaaagcatgatatgtgctctctttttgtgcatcacttatgtttaactgtactattcttacgtacacaactgtaatgtgatgtgcaggatccatctataaaggagatggcagagcagattgcaagcgaccctgtgttcacccagatggcagagcagctgcagaagagtgctcatgtgaccggggaacagggtggccctgcattggatcctcagcagtacatggaaacaatgacacaagtcatgcaaaaccctcaattcatgtcaatggcagaacgtcttgggaatactcttatgcaggtatcatgttatgtttccagagtcatcaccagaaaaaattttcagaatgtttcttcgcttcaagttttctgctacgcatgacaggatcctggaatgtccagtatgctcgagagtttgactagtccttctcataaggagctgcttgaagagcggatgtcccgtattaaagaagatccctctttgaaggggattcttgatgagatagagagtggtggtccatctgctatggtgaagtaggtgttgtatgctagtatttagatataactgtggcttttaaatttgctgagatggtttgcctcacttatttcaggtactggaatgaccctgaagttcttcaaaagattggtcaggctatgtcaattaattttccaggagatgctgctacttccactacattgtctggacctgaagaaactgaagaggatggtggagatgatgatgagtccattgtccatcatactgccagtgttggcgatgcggaggtaatgaagttcgataataactataggacgtgacttctgtttttactttgctctgagttgatctgaaacttgtgctggtatctatccgtattagtcttcacgactatgtgtagctatgctgcccatcaatgtagcaggttgtttacccgacctatcactatacaacaaagcttgcttctccaactaagcatatgactaaaccatgcttttcctagatagttctataacataacctggcttcttgttcttaaagctttgtggaccacctgcttattgtgtttattatccatacaccgtttgcctttatttggtgccaattctacacaaatgctacgtagaaaaatgacttctgtttgttgaatctgatatacgcggggtttaaatcagggcaggtttctcatttggctgccctttttcgttcttaatgttcctgatctttgcactagatatggtcgctcttgatgtcaatctcttatttatgtttgagcctgaggaaatatattaaatcattgtactactcatttgctgcaagtacttctttatacaacataatgactcaacagggtctgaagaaagctttagaggatggagcagacatggatgaagaagacgctgagggaagaagggccttacattttgcgtgtggttacggtgaggtatgtggaactgctgaatggtttagaatagaaatgaatcacgtaacacagattaaatacggatgtttgtagcaataaccaattgggtgaacttgtctgttttcagttgaaatgcgcagagatccttctggaggcaggtgctgctgtaaacgcactggataagaacaagaacaccccactgcattacgctgctggatatggtcggaaagaatgtgtggatcttctgctgaagcatggcgctgctgtgtaagtttaaaccagctatttcatctaaaaccgagtcgatttgatgccctgctagtttgtgcctaacttgatgaaaattgatgaccccagcacgccccagaatctggacgggaagacccccatcgaggtggccaagctgaacaaccaggatgaggtcctcaaggtgctcgagatggacgctttcctataaagaaaccaatgccaaatctcacgctcatcatcaccggctcgtcgctttacagttcagatttttactgcatacccaaatcatcatcgactcttttagctttggttttggtgtggtggtggtacattcgttgaatcgttgctatgtttggtgctccgatttgtaatctgtttcacttccccgttacactgcatcactccgtttcatcctttgtattcctatgttgctgagtctggtgttgcagacgttgctcctgtttttctcagcgttttcgtgtcagattggtagtttatatagataagagatgc</dnaseqindica>|
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* Department of Microbiology, University of Florida, Gainesville, FL 32611, USA.
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001070182.1 RefSeq:Os09g0513000]|
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==References==
}}
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<references>
[[Category:Genes]]
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* <ref name="ref1">
[[Category:Japonica mRNA]]
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Jiang Y, Chen X, Ding X, Wang Y, Chen Q, Song WY. The XA21 binding protein
[[Category:Oryza Sativa Japonica Group]]
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XB25 is required for maintaining XA21-mediated disease resistance. Plant J. 2013
[[Category:Japonica Genes]]
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Mar;73(5):814-23. doi: 10.1111/tpj.12076. Epub 2013 Feb 12. PubMed PMID:
[[Category:Japonica Chromosome 9]]
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23206229.
[[Category:Chromosome 9]]
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</ref>
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</references>
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==Structured Information==
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[[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 9]]

Latest revision as of 09:23, 18 October 2016

Please input one-sentence summary here.

Annotated Information

Gene Symbol

  • Os09g0513000 <=> OsXB25,XB25
Figure 6. XB25 is induced by Xoo infection in an Xa21-indpendent manner.[1].

Function

  • The XA21 binding protein XB25 is required for maintaining XA21-mediated disease resistance.
  • XB25 physically interacts, in vitro, with the transmembrane domain of XA21 through its N–terminal binding to transmembrane and positively charged domain (BTMP) repeats. In addition, XB25 associates with XA21 in planta.
  • The downregulation of Xb25 results in reduced levels of XA21 and compromised XA21-mediated disease resistance at the adult stage.
  • XB25 is required for maintaining XA21-mediated disease resistance.

Expression

  • Xoo infection can alter the expression of a large number of rice genes.
  • The researchers monitored Xb25 transcript levels and the XB25 abundance in both TP309 and the XA21-expressing line 4021–3 after PXO99 A inoculation.
  • As shown in Figure 6, both RNA transcript and protein levels of XB25 are increased 12 h after inoculation in both TP309 and 4021–3 lines, indicating that the expression of Xb25 is induced by pathogen inoculation in an Xa21-inde-pendent manner. This elevated expression continues for at least 3 days.

You can also add sub-section(s) at will.

Labs working on this gene

  • Department of Plant Pathology, University of Florida, Gainesville, FL 32611, USA
  • Integrated Plant Genetics, Inc, Alachua, FL 32608, USA.
  • UT Southwestern Medical Center at Dallas, 5323 Harry Hines Blvd, Dallas, TX 75390, USA.
  • Department of Microbiology, University of Florida, Gainesville, FL 32611, USA.

References

  1. Jiang Y, Chen X, Ding X, Wang Y, Chen Q, Song WY. The XA21 binding protein XB25 is required for maintaining XA21-mediated disease resistance. Plant J. 2013 Mar;73(5):814-23. doi: 10.1111/tpj.12076. Epub 2013 Feb 12. PubMed PMID: 23206229.


Structured Information