Difference between revisions of "Os02g0833000"

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(Created page with "{{JaponicaGene| GeneName = Os02g0833000| Description = Similar to Serine/threonine-protein kinase PBS1 (EC 2.7.1.37) (AvrPphB susceptible protein 1)| Version = NM_001055167...")
 
(→‎Gene Symbol)
 
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{{JaponicaGene|
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The rice '''''Os02g0833000''''' was reported as '''''GnTI''''' in 2013 <ref name="ref1" /> by researchers from Korea.  
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GeneName = Os02g0833000|
 
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Description = Similar to Serine/threonine-protein kinase PBS1 (EC 2.7.1.37) (AvrPphB susceptible protein 1)|
 
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Version = NM_001055167.1 GI:115450061 GeneID:4331264|
 
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Length = 1286 bp|
 
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Definition = Oryza sativa Japonica Group Os02g0833000, complete gene.|
 
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Source = Oryza sativa Japonica Group
 
  
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  ORGANISM  Oryza sativa Japonica Group
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==Annotated Information==
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            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
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===Gene Symbol===
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            Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
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*'''''Os02g0833000''''' '''''<=>''''' '''''OsGnTI,GnTI'''''
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            clade; Ehrhartoideae; Oryzeae; Oryza.
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[[File:114-Os02g0833000 .png|right|thumb|327px|'''Figure 2.''' ''Developmental analysis of gnt1.<ref name="ref1" />.'']]
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|
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Chromosome = [[:category:Japonica Chromosome 2|Chromosome 2]]|
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===Function===
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AP = Chromosome 2:36708547..36709832|
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* Oryza sativa '''''GnTI''''' encodes enzymatically and functionally active protein
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CDS = 36708553..36709659|
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*  Loss of '''''GnTI''''' function resulted in decreased cell wall synthesis activity, which might be responsible for the brittle phenotype and reduced tensile strength in gnt1.
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GCID = <gbrowseImage1>
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* '''''GnTI''''' plays an important role in cellulose biosynthesis in the plant.
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name=NC_008395:36708547..36709832
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===Phenotypic analysis===
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source=RiceChromosome02
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preset=GeneLocation
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* Phenotypic analyses revealed that gnt1 shows defective post-seedling development and incomplete cell wall bio-synthesis, leading to symptoms such as failure in tiller formation, brittle leaves, reduced cell wall thickness, and decreased cellulose content.
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</gbrowseImage1>|
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* The developmental defects of gnt1 ultimately resulted in early lethality without transition to the reproductive stage.  
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GSID = <gbrowseImage2>
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* However, callus induced from gnt1 seeds could be maintained for periods, although it exhibited a low proliferation rate, small size, and hypersensitivity to salt stress.  
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name=NC_008395:36708547..36709832
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* Shoot regeneration and dark-induced leaf senescence assays indicated that the loss of GnTI function results in reduced sensitivity to cytokinin in rice.
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source=RiceChromosome02
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* Reduced expression of A-type O. sativa response regulators that are rapidly induced by cytokinins in gnt1 confirmed that cytokinin signaling is impaired in the mutant.
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preset=GeneLocation
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</gbrowseImage2>|
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You can also add sub-section(s) at will.
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CDNA = <cdnaseq>atgaaggaagggatgagctgcttctcgtggaaccccagcctgcggtgctggcatggcagcaatgacggcggcagcccgtgcagccaggccgcgcaggcggcgtcggcgggggcgggcggtgcgaagaagttcacgctggcgcagctgtcggcggccacggacgggttccacgagtccaacgttgtcggcgagggcgggttcggcagggtgtacagggggcgtctcgaggaaggcggccaagggctcgtggccgtgaagcagctctgccacggtggcgcgcagggaacccgcgagttcctggtggaatgcatgatgctcatgatgctgcaccaccccaacctcgtctccctcgtcggctactgcgccgacgccggcgagcgcctcctcgtctacgagttcctgccacgcggcagcctcgacgcgcacctcttcggcaggaggccgcaggagcccccgctggcgctggggtgggcggcgcgcgtcaggatcgcggtcggcgcggccagggggcttcgctacctgcacgaggtggtgacgccgccggtgatctaccgcgacctcaaggcgtccaacatcctgctcgacgacgacctcaaccccaggctgtcggactttggcctcgccaagctgggccccgtcggcgacgacacccacgtgtccacgcgcgtcatgggcacctacggctactgcgcgcccgactacgccatgagcggcaagctcaacgtcaagtccgacgtctacagcttcggcgtcgtgctcctcgagctcatcactggacgcagggccttcgacgccgcctcctccgactcggagtcggaggaccaccagcgcttcctcctcctccgggactgggcgcgcccctacctcgccggcgaccgcaagaggtgcttcgccctggccgacccggcgttgcagggccgctacccccgccgcgccttctaccagctcgccgtcgtcgcctcgctctgcctccgcgacaaccccaacctccgcccctccatgacagacgtcacccgagccctcgaccacgtcgcctcccagtcccagccatgggaagacaagcaaagagccaccaccaccacgcctcctcccaactcccaaccttaa</cdnaseq>|
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AA = <aaseq>MKEGMSCFSWNPSLRCWHGSNDGGSPCSQAAQAASAGAGGAKKF                    TLAQLSAATDGFHESNVVGEGGFGRVYRGRLEEGGQGLVAVKQLCHGGAQGTREFLVE                    CMMLMMLHHPNLVSLVGYCADAGERLLVYEFLPRGSLDAHLFGRRPQEPPLALGWAAR                    VRIAVGAARGLRYLHEVVTPPVIYRDLKASNILLDDDLNPRLSDFGLAKLGPVGDDTH                    VSTRVMGTYGYCAPDYAMSGKLNVKSDVYSFGVVLLELITGRRAFDAASSDSESEDHQ                    RFLLLRDWARPYLAGDRKRCFALADPALQGRYPRRAFYQLAVVASLCLRDNPNLRPSM                    TDVTRALDHVASQSQPWEDKQRATTTTPPPNSQP</aaseq>|
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==Labs working on this gene==
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DNA = <dnaseqindica>7..1113#agatgaatgaaggaagggatgagctgcttctcgtggaaccccagcctgcggtgctggcatggcagcaatgacggcggcagcccgtgcagccaggccgcgcaggcggcgtcggcgggggcgggcggtgcgaagaagttcacgctggcgcagctgtcggcggccacggacgggttccacgagtccaacgttgtcggcgagggcgggttcggcagggtgtacagggggcgtctcgaggaaggcggccaagggctcgtggccgtgaagcagctctgccacggtggcgcgcagggaacccgcgagttcctggtggaatgcatgatgctcatgatgctgcaccaccccaacctcgtctccctcgtcggctactgcgccgacgccggcgagcgcctcctcgtctacgagttcctgccacgcggcagcctcgacgcgcacctcttcggcaggaggccgcaggagcccccgctggcgctggggtgggcggcgcgcgtcaggatcgcggtcggcgcggccagggggcttcgctacctgcacgaggtggtgacgccgccggtgatctaccgcgacctcaaggcgtccaacatcctgctcgacgacgacctcaaccccaggctgtcggactttggcctcgccaagctgggccccgtcggcgacgacacccacgtgtccacgcgcgtcatgggcacctacggctactgcgcgcccgactacgccatgagcggcaagctcaacgtcaagtccgacgtctacagcttcggcgtcgtgctcctcgagctcatcactggacgcagggccttcgacgccgcctcctccgactcggagtcggaggaccaccagcgcttcctcctcctccgggactgggcgcgcccctacctcgccggcgaccgcaagaggtgcttcgccctggccgacccggcgttgcagggccgctacccccgccgcgccttctaccagctcgccgtcgtcgcctcgctctgcctccgcgacaaccccaacctccgcccctccatgacagacgtcacccgagccctcgaccacgtcgcctcccagtcccagccatgggaagacaagcaaagagccaccaccaccacgcctcctcccaactcccaaccttaattcctccatctgctcattctagctactagttgcctagctctctctctctctctctctcttggttggattcccatgttatgttcccccttaatttggaaggccatgggtgatttcactgattgattttcatcattttcttagttgctcttcatgtatatatattaacctttaac</dnaseqindica>|
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* Division of Applied Life Science (BK21 Program) and PMBBRC, Gyeongsang National University, 501 Jinju-daero, Jinju 660-701, Korea
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Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001055167.1 RefSeq:Os02g0833000]|
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* Division of Electron Microscopic Research, Korea Basic Science Institute, 113 Gwahangno, Yuseong-gu, Daejeon 305-333, Korea
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}}
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* Integrative Omics Research Center, Korea Research Institute of Bioscience and Biotechnology, Yuseong-gu, Daejeon 305- 806, Korea
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[[Category:Genes]]
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[[Category:Japonica mRNA]]
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==References==
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[[Category:Oryza Sativa Japonica Group]]
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<references>
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[[Category:Japonica Genes]]
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* <ref name="ref1">
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[[Category:Japonica Chromosome 2]]
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Fanata WI, Lee KH, Son BH, Yoo JY, Harmoko R, Ko KS, Ramasamy NK, Kim KH, Oh
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[[Category:Chromosome 2]]
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DB, Jung HS, Kim JY, Lee SY, Lee KO. N-glycan maturation is crucial for
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cytokinin-mediated development and cellulose synthesis in Oryza sativa. Plant J.  
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2013 Mar;73(6):966-79. doi: 10.1111/tpj.12087. Epub 2013 Feb 25. PubMed PMID:
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23199012.
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</ref>
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</references>
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==Structured Information==
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    [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 2]]

Latest revision as of 09:36, 18 October 2016

The rice Os02g0833000 was reported as GnTI in 2013 [1] by researchers from Korea.

Annotated Information

Gene Symbol

  • Os02g0833000 <=> OsGnTI,GnTI
Figure 2. Developmental analysis of gnt1.[1].

Function

  • Oryza sativa GnTI encodes enzymatically and functionally active protein
  • Loss of GnTI function resulted in decreased cell wall synthesis activity, which might be responsible for the brittle phenotype and reduced tensile strength in gnt1.
  • GnTI plays an important role in cellulose biosynthesis in the plant.

Phenotypic analysis

  • Phenotypic analyses revealed that gnt1 shows defective post-seedling development and incomplete cell wall bio-synthesis, leading to symptoms such as failure in tiller formation, brittle leaves, reduced cell wall thickness, and decreased cellulose content.
  • The developmental defects of gnt1 ultimately resulted in early lethality without transition to the reproductive stage.
  • However, callus induced from gnt1 seeds could be maintained for periods, although it exhibited a low proliferation rate, small size, and hypersensitivity to salt stress.
  • Shoot regeneration and dark-induced leaf senescence assays indicated that the loss of GnTI function results in reduced sensitivity to cytokinin in rice.
  • Reduced expression of A-type O. sativa response regulators that are rapidly induced by cytokinins in gnt1 confirmed that cytokinin signaling is impaired in the mutant.

You can also add sub-section(s) at will.

Labs working on this gene

  • Division of Applied Life Science (BK21 Program) and PMBBRC, Gyeongsang National University, 501 Jinju-daero, Jinju 660-701, Korea
  • Division of Electron Microscopic Research, Korea Basic Science Institute, 113 Gwahangno, Yuseong-gu, Daejeon 305-333, Korea
  • Integrative Omics Research Center, Korea Research Institute of Bioscience and Biotechnology, Yuseong-gu, Daejeon 305- 806, Korea

References

  1. ↑ 1.0 1.1 Fanata WI, Lee KH, Son BH, Yoo JY, Harmoko R, Ko KS, Ramasamy NK, Kim KH, Oh DB, Jung HS, Kim JY, Lee SY, Lee KO. N-glycan maturation is crucial for cytokinin-mediated development and cellulose synthesis in Oryza sativa. Plant J. 2013 Mar;73(6):966-79. doi: 10.1111/tpj.12087. Epub 2013 Feb 25. PubMed PMID: 23199012.

Structured Information