Difference between revisions of "Os09g0529700"

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(Created page with "{{JaponicaGene| GeneName = Os09g0529700| Description = EAP30 family protein| Version = NM_001189023.1 GI:297727176 GeneID:9269587| Length = 2499 bp| Definition = Oryza sa...")
 
 
(2 intermediate revisions by 2 users not shown)
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{{JaponicaGene|
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The rice '''''Os09g0529700''''' was reported as '''''OsVPS22,VPS22''''' in 2013 <ref name="ref1" /> by researchers from China.  
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GeneName = Os09g0529700|
 
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Description = EAP30 family protein|
 
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Version = NM_001189023.1 GI:297727176 GeneID:9269587|
 
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Length = 2499 bp|
 
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Definition = Oryza sativa Japonica Group Os09g0529700, complete gene.|
 
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Source = Oryza sativa Japonica Group
 
  
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  ORGANISM  Oryza sativa Japonica Group
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==Annotated Information==
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            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
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[[File:117-Os09g0529700.png|right|thumb|427px|'''Figure 4.''' ''Morphology of the endosperm in the vps22 mutants and wild-type.<ref name="ref1" />.'']]
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            Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
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===Gene Symbol===
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            clade; Ehrhartoideae; Oryzeae; Oryza.
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*'''''Os09g0529700''''' '''''<=>''''' '''''OsVPS22,VPS22'''''
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|
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===Function===
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Chromosome = [[:category:Japonica Chromosome 9|Chromosome 9]]|
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* '''''OsVPS22''''' encodes a functional '''''VPS22''''' homolog in rice.
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AP = Chromosome 9:21576480..21578978|
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* '''''OsVPS22''''' may be required for seedling viability and grain filling in rice, thus providing a valuable resource for further exploration of the functions of the ESCRTing machinery in plants.
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CDS = 21577614..21577924,21578029..21578164,21578720..21578830,21578921..21578971|
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GCID = <gbrowseImage1>
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===Phenotypic analysis===
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name=NC_008402:21576480..21578978
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* The central portion of the dehusked seeds of mutants showed the endosperm with a dark central portion (Fig. 4B), whereas the wild-type control seeds showed a transparent normal endosperm on an illuminator (Fig. 4A).  
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source=RiceChromosome09
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* Notably, in the mutant endosperms, a dark central portion is commonly evident and is characteristic of a floury white-core endosperm.  
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preset=GeneLocation
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* Transverse section of the mature seeds of rice mutant further revealed that the central portion of the endosperm showed floury or floury-like phenotype (Fig. 4D), whereas the seeds of wild-type rice plants showed normal development (Fig. 4C).
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</gbrowseImage1>|
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GSID = <gbrowseImage2>
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You can also add sub-section(s) at will.
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name=NC_008402:21576480..21578978
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source=RiceChromosome09
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==Labs working on this gene==
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preset=GeneLocation
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* College of Agriculture, South China Agricultural University, Guangzhou 510642, China
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</gbrowseImage2>|
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* MOE Key Laboratory of Bio-resources and Eco-environment, College of Life Sciences, Sichuan University, Chengdu 610064, China
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CDNA = <cdnaseq>atgaggaggcgaccgggaatcgcgggcttgcagaacgcagcggctactcgtgaccaattccggctggttggggaaaatgtggccaaggtcaggaccgatgtcatgaaggagcagcttgcgacgtttcggacacagctcgaagaatttgcacgcaagcataagaatgatatccgtaaaaatccactatttagacaacagttccatgagatgtgtgcaaaagttggagtagacccgctggcttcgaataaaggagcttgggcagagcttctagggattggtgacttctactatgaattgggagttcagattgttgacatatgcatagcaaccagagcgaccaacggtggcttgattgacttgctagatctccgtaaactcctctgtcagaagaggaaagctgatcttggatcgttaacatcagatgattgtttgcgtgcgataagtaagctgaaggcaagtattttaaggaattctacagctacatttttttgggaatcctgtaattgcattcatgcaagttttacaagattgcattcgaatctatggccaataaaattttatttgatgtacttggacagatcgttaattcttctggtcctttgcctgtga</cdnaseq>|
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==References==
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AA = <aaseq>MRRRPGIAGLQNAAATRDQFRLVGENVAKVRTDVMKEQLATFRT                    QLEEFARKHKNDIRKNPLFRQQFHEMCAKVGVDPLASNKGAWAELLGIGDFYYELGVQ                    IVDICIATRATNGGLIDLLDLRKLLCQKRKADLGSLTSDDCLRAISKLKASILRNSTA                    TFFWESCNCIHASFTRLHSNLWPIKFYLMYLDRSLILLVLCL</aaseq>|
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<references>
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DNA = <dnaseqindica>1055..1365#815..950#149..259#8..58#aggaagcatgaggaggcgaccgggaatcgcgggcttgcagaacgcagcggctactcgtgtatgtggacatcttgcttgaatagcttataatgttttttttttctttttctgtggattctgagatgagtgtgctcttggaaaatttaaggaccaattccggctggttggggaaaatgtggccaaggtcaggaccgatgtcatgaaggagcagcttgcgacgtttcggacacagctcgaagaatttgcacgcaagcataaggtgattcctactcctgtattctagttgagttttacagaaaatattaccgacgctattcgtatgtcacaaattgaattacacatagcatgctttcacaatcttcttaatcttggggatcaggatatatcagtcattcttgcagactgactgaattcttacattttttttcaactgcccagcgcaaatgaaatgaatgttctaacaaacatgaaaacagtgaagttactgctattcacttgattaaagttgtctatcgaactgggaaatagggaacctaagtagcatactagtccatggtcaagtgctcaacatatactaaaactgaggaacggtagttaaagatggaaaatgtaccaaagaaaaggtgttggagttaccaaggtgccaattgatcttgtttcttgtgatagatttcacttgtctcatggcatctagttccaactgggttgacatttgcaatgtaacactgatgttctaggtgatcacaatagagctcaaatggcacagcatattccaactcttaagtaactttgtgtacatggtgtgctagtgcagaatgatatccgtaaaaatccactatttagacaacagttccatgagatgtgtgcaaaagttggagtagacccgctggcttcgaataaaggagcttgggcagagcttctagggattggtgacttctactatgaattgggttggtatacttaatttaagctaccttgtatgttttgatcctggaattttctgttattattggaccatttacgttctgcttggcatctgtgtctattgcaccaggagttcagattgttgacatatgcatagcaaccagagcgaccaacggtggcttgattgacttgctagatctccgtaaactcctctgtcagaagaggaaagctgatcttggatcgttaacatcagatgattgtttgcgtgcgataagtaagctgaaggcaagtattttaaggaattctacagctacatttttttgggaatcctgtaattgcattcatgcaagttttacaagattgcattcgaatctatggccaataaaattttatttgatgtacttggacagatcgttaattcttctggtcctttgcctgtgaactctcaggtccttggtagtggttttgaagtaatttctgttgggaagaaaaagcttgtgcgttctgttcctacagaactgaataaagatcacaatgggatacttgagctagctcaggtttgtaatcagcttttaatagtgtataataccacagtacacttaacaagtatgtggatgctgtcataaccttatcatgcttacactgaacaagtatgtggatggtgtataacctttggttggaagtcataaagccccctatgttccacataaacgcttatttcagtcaacatagagacatagtacaaaactaagttaaaccgaagctttcaagttgctgccttgctcaatctgtcaccttgccacaatataaccgtacctgtccagttataacattatttcacatgcaggctgaaggttttgtcaccgtagagcaagtcgagagaaagttctcgtggtcaactggccgtgccattgacgtccttgaaactttgctcaaggtaaatcctgctcctgcatttccactctttaagcaacctttgtgcttcatttctgtgcccaaagaaaagaaaaccggcttcctttgatgcaagttatgtattggtgaatggtgattagatctctctgttgaatccacgcttaagccattgcaggattaccttctttttgagctatccataatccatatataaataaagtacttttcgtatgtgcatctgtattgacacttttatgaacgtcaaattttttggcatctatatccaactctggtctctattacataaacaggaagggcttgcgatgatcgacgatgggcacagggatggcaagcgcagatactggttcccgtgcgtcactctcagctctgactctactggtgcggatgccaagtcatgacctgtgccgtgcctgttccactccgttgttgtcacctgtatccttttccattggttcatttctgtaggcactgaagcacatatggcatgccatttaccagtacagctctggaagaatcatgagatagcaatacacttttcagggctgggctgccggcaaaatttttacattgtgattcgtgcatcaggattctggatgtatttgtactagtgatctatactatactagctcttctttcacg</dnaseqindica>|
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* <ref name="ref1">
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Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001189023.1 RefSeq:Os09g0529700]|
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Zhang XQ, Hou P, Zhu HT, Li GD, Liu XG, Xie XM. Knockout of the VPS22
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}}
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component of the ESCRT-II complex in rice (Oryza sativa L.) causes chalky
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[[Category:Genes]]
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endosperm and early seedling lethality. Mol Biol Rep. 2013 May;40(5):3475-81.
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[[Category:Japonica mRNA]]
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doi: 10.1007/s11033-012-2422-1. Epub 2012 Dec 30. PubMed PMID: 23275199.
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[[Category:Oryza Sativa Japonica Group]]
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</ref>
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[[Category:Japonica Genes]]
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</references>
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[[Category:Japonica Chromosome 9]]
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[[Category:Chromosome 9]]
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==Structured Information==
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[[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 9]]

Latest revision as of 15:04, 18 October 2016

The rice Os09g0529700 was reported as OsVPS22,VPS22 in 2013 [1] by researchers from China.

Annotated Information

Figure 4. Morphology of the endosperm in the vps22 mutants and wild-type.[1].

Gene Symbol

  • Os09g0529700 <=> OsVPS22,VPS22

Function

  • OsVPS22 encodes a functional VPS22 homolog in rice.
  • OsVPS22 may be required for seedling viability and grain filling in rice, thus providing a valuable resource for further exploration of the functions of the ESCRTing machinery in plants.

Phenotypic analysis

  • The central portion of the dehusked seeds of mutants showed the endosperm with a dark central portion (Fig. 4B), whereas the wild-type control seeds showed a transparent normal endosperm on an illuminator (Fig. 4A).
  • Notably, in the mutant endosperms, a dark central portion is commonly evident and is characteristic of a floury white-core endosperm.
  • Transverse section of the mature seeds of rice mutant further revealed that the central portion of the endosperm showed floury or floury-like phenotype (Fig. 4D), whereas the seeds of wild-type rice plants showed normal development (Fig. 4C).

You can also add sub-section(s) at will.

Labs working on this gene

  • College of Agriculture, South China Agricultural University, Guangzhou 510642, China
  • MOE Key Laboratory of Bio-resources and Eco-environment, College of Life Sciences, Sichuan University, Chengdu 610064, China

References

  1. ↑ 1.0 1.1 Zhang XQ, Hou P, Zhu HT, Li GD, Liu XG, Xie XM. Knockout of the VPS22 component of the ESCRT-II complex in rice (Oryza sativa L.) causes chalky endosperm and early seedling lethality. Mol Biol Rep. 2013 May;40(5):3475-81. doi: 10.1007/s11033-012-2422-1. Epub 2012 Dec 30. PubMed PMID: 23275199.

Structured Information