|
|
| (4 intermediate revisions by 3 users not shown) |
| Line 1: |
Line 1: |
| − | {{JaponicaGene|
| + | The rice '''''Os04g0379900''''' was reported as '''''SLL1''''' in 2013 <ref name="ref1" /> by researchers from Japan. |
| − | GeneName = Os04g0379900|
| |
| − | Description = Similar to Acyl-[acyl-carrier-protein] desaturase, chloroplast precursor (EC 1.14.19.2) (Stearoyl-ACP desaturase)|
| |
| − | Version = NM_001059129.1 GI:115457987 GeneID:4335627|
| |
| − | Length = 4187 bp|
| |
| − | Definition = Oryza sativa Japonica Group Os04g0379900, complete gene.|
| |
| − | Source = Oryza sativa Japonica Group
| |
| | | | |
| − | ORGANISM Oryza sativa Japonica Group
| + | ==Annotated Information== |
| − | Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
| + | [[File:122-Os04g0379900.png|right|thumb|227px|'''Figure 1.''' ''Phenotype of the sll1 mutant..<ref name="ref1" />.'']] |
| − | Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
| + | ===Function=== |
| − | clade; Ehrhartoideae; Oryzeae; Oryza.
| + | * The '''''SLL1''''' gene encodes a member of the stearoyl-acyl carrier protein fatty acid desaturase family that is the key regulator of overall fatty acid desaturation in plants. |
| − | |
| + | * '''''SLL1''''' is important for the elongation of lateral roots in rice. |
| − | Chromosome = [[:category:Japonica Chromosome 4|Chromosome 4]]|
| + | * '''''SLL1''''' over-expressers produced significantly longer lateral roots compared to the wild-type, and thus SLL1 gene would be very useful for improving rice root architecture. |
| − | AP = Chromosome 4:18581169..18585355|
| + | ===Phenotypic analysis=== |
| − | CDS = 18581579..18582139,18582549..18583050,18585152..18585261|
| + | * We did not find any large difference in the division zone between the sll1 mutant and the wild-type (Fig. 1C), but we found that the cell length was much reduced in the sll1 mutant (Fig. 1D). |
| − | GCID = <gbrowseImage1>
| + | * To determine whether the number of lateral roots was altered in the sll1 mutant, we measured the lateral root density and found no significant difference in the lateral root density between the wild-type and the sll1 mutant (Fig. 1E). |
| − | name=NC_008397:18581169..18585355
| + | * This result suggests that the mutation only inhibited cell elongation in the lateral roots. |
| − | source=RiceChromosome04
| + | ===Expression=== |
| − | preset=GeneLocation
| + | * The '''''SLL1''''' gene was expressed at the lateral root tip, whereas SLL1 expression was not detected in the elongation zone of the crown roots. |
| − | </gbrowseImage1>|
| + | |
| − | GSID = <gbrowseImage2>
| + | You can also add sub-section(s) at will. |
| − | name=NC_008397:18581169..18585355
| + | |
| − | source=RiceChromosome04
| + | ==Labs working on this gene== |
| − | preset=GeneLocation
| + | * Graduate School of Bioagricultural Sciences, Nagoya University, Nagoya, Aichi 464-8601, Japan |
| − | </gbrowseImage2>| | + | ==References== |
| − | CDNA = <cdnaseq>atggcgttcgcggcgtcccacaccgcatcgccgtcctcctgcggcggtgtggcgcagaggaggagcaatgggatgtcgccggtggtggccatggcctccaccatcaacagggtcaagactgctaagaagccctacactcctccacgtgaagttcatctccaagtcaagcattcactgccaccccaaaagcgggagattttcgattcgcttcaaccttgggccaaagagaaccttttgaacctcctgaagccagttgagaagtcatggcagccacaggacttcctgccagacccttcttccgatgggttttatgatgaagtaaaagagctgcgggagagggctaaggagatccctgatgactactttgtttgcttagttggagacatggttactgaggaagctcttcctacctatcaaacaatgcttaacacccttgatggtgtccgagatgaaactggcgcaagcccaaccacctgggctgtttggacaagagcatggactgctgaagagaacaggcatggtgatcttcttaataagtacatgtaccttactggacgtgttgacatgaaacaaattgagaagacaatacaatacctgattgggtctgggatggatccaggaactgagaataatccctacttgggtttcctttacacatcatttcaagaaagagctacatttatatcccatggcaatactgcaaggcacgccaaggagtacggggaccttaagctggctcagatatgtgggacaatagcagctgatgagaagcgccatgagacagcttacaccaagatagtggagaagctcttcgagattgatcctgactacacagttcttgcatttgctgacatgatgaggaagaagatctcaatgcctgctcatctgatgtatgacggcaaggacgacaacttgttcgagcatttcagcgctgtggcacagcggctgggtgtctacactgcaagagactatgccgacatcctggagttcttggtccagaggtggaaagtcgcagatctcaccgggctgtccggagaagggagaagggctcaggatttcgtctgcacgttggcgccgagaatcaggcggctggatgaaagagcccaagcaagagctaagcaagcgcctgttattcctttcagctgggtttatgaccgcaaagtgcagctttga</cdnaseq>|
| + | <references> |
| − | AA = <aaseq>MAFAASHTASPSSCGGVAQRRSNGMSPVVAMASTINRVKTAKKP YTPPREVHLQVKHSLPPQKREIFDSLQPWAKENLLNLLKPVEKSWQPQDFLPDPSSDG FYDEVKELRERAKEIPDDYFVCLVGDMVTEEALPTYQTMLNTLDGVRDETGASPTTWA VWTRAWTAEENRHGDLLNKYMYLTGRVDMKQIEKTIQYLIGSGMDPGTENNPYLGFLY TSFQERATFISHGNTARHAKEYGDLKLAQICGTIAADEKRHETAYTKIVEKLFEIDPD YTVLAFADMMRKKISMPAHLMYDGKDDNLFEHFSAVAQRLGVYTARDYADILEFLVQR WKVADLTGLSGEGRRAQDFVCTLAPRIRRLDERAQARAKQAPVIPFSWVYDRKVQL</aaseq>|
| + | * <ref name="ref1"> |
| − | DNA = <dnaseqindica>3217..3777#2306..2807#95..204#cttctctaaccccctgctgttgctagcagaagtccaggtggacaagaacgcgaggaggggaagaatcatccccgagatctcgctgccgctgctcatggcgttcgcggcgtcccacaccgcatcgccgtcctcctgcggcggtgtggcgcagaggaggagcaatgggatgtcgccggtggtggccatggcctccaccatcaacaggtgaccggatccctctagtccctcctccctccctccctccctccccgtcgcgcgcgtgatcttggtttggtagggtgggttcttgcgcgcttcggggttcttcttggttcttgcttctctggggttggtgagatttgtgatctggcggtggatcaagtcaaatcgttggggggtgaaaaatgcatgttctgcgtgctccgtggtgtgttgtgggggattcatctcccacctcctcatcgagatcctgggggtcagaggtgttccaagattgatttgagcttgggttggtttgggttctctctgggggatgcttgattccagatttcctggcctctgatccgacccgagggtttcctccctgctcgtgatctcgatgggttcgtccgtgatccgctccggatttgatgatctgtccatttttttttctttttgcagctttgtgatatttggtttctgcatgtgccaccataagttgattatgttgatgattttgctgaaactattgcctgaaattgaccatggatgattatctaaagctttgatgcgatcttacccatttagatgtaaattattcctgtgcagttgcttctagcaattaaaaacttgtagtttagggcgattagggacttgttcgttcaaaaattggtccgttcaatttgtgtatcttcgacgcttttaaacaaaatcggtctgttgacctgaaattttcctggtgaatgatggctatgtgatggtgttgaactcttgaaactgggactgaatattaataacctgtcaatatcctctgcgagtaatcctttcgtcaggctaatccgctggttaaatagataagttatagagaattagagatgcatgtactgttgaattgttgagttgaaagcactgcttcttatggaaccaccatcaaccaactgagataggtgaaatggtaaaattaaagtgggttggtgatccagaatttttttttctccatgcttttcgcttagggtggatgcggggagaaagctgaaaactagtcgaatagctgttgagatctgaacatgttcaaatctgttgatggtgatagactgattctgaacatttaaggcctgctttgcaaccacctgtgtactccaccgctaacagtactgctttaggatttgtgtagcctcttctttctagagagcacagaagcaccttctatattcaatttgaattatgaatttaagaaattttcattttttttctgctgtttttaggtctgtgctgtagttttcttctactttactaataatttagaattatcaacaagaaagtaacgctagtgtaacaaaagggcagaaagaggatctgcgtcattgcctcccatgatttgataacagttatacatatgcggttcatgattatataccatgccaattatggagtgaattttgcattacgtttactgtttttgtttggtttatcaatcaatcaacactggatattatcatgtagagctcagagaacatggtagtttcaagcttgtcaatgtacctatcttggaaaatctcgaaatcgtagttactactaatgatattacttttgtccatctatcctgtcctaggcttttacctaggttgaaaaaatatttttgataaacactggtttgattaaactgtctatacaaacatcagacctttcttttcacatgaagatgaagatgaagttttttacgcaaaacgaggtggtattaacgtatgatcgattgagttttaattatgacaaactttaagaatagatttatatgatattttaaagcaactttcatatagaaagttttcataagaaacgtaccgtttagcagtttgaaaagcgtgccacgaaaattttaatcttcatccaactcttgttggagaaaagaacaggtgttaggtgtattttttgattttcttttcttggacaccgtaaaaaaattgcttcaaggactgaaaggattcccagcctagagatttggtggcagatggtttattatgagctggatacatcactctacctttctataagctttaattaaactactttcatatctattatgcgatatttcttctccattcttctaatttacttcaattttttgtagggtcaagactgctaagaagccctacactcctccacgtgaagttcatctccaagtcaagcattcactgccaccccaaaagcgggagattttcgattcgcttcaaccttgggccaaagagaaccttttgaacctcctgaagccagttgagaagtcatggcagccacaggacttcctgccagacccttcttccgatgggttttatgatgaagtaaaagagctgcgggagagggctaaggagatccctgatgactactttgtttgcttagttggagacatggttactgaggaagctcttcctacctatcaaacaatgcttaacacccttgatggtgtccgagatgaaactggcgcaagcccaaccacctgggctgtttggacaagagcatggactgctgaagagaacaggcatggtgatcttcttaataagtacatgtaccttactggacgtgttgacatgaaacaaattgagaagacaatacaatacctgattgggtctgggatggtaagagctaatatctatttaggcatgatgatattattttcctttttacttaagtttacaatgctattgtggataaccttgttatcaatagccatgtctccaatattcttaaaataatattttgagaactgagcgctattcattttattaaagcattggacaacataacctttcatgtacagttttacttctaaagcaagtaaaaacattgacttatatttacgtgcctacttgataaattgcttgcaccatgtcagtccatagaaaatgtgcttcattttttgtttttgaaggaaacatggttagatgattcactgcattttagaatcaaccgtggtatggttattcataaattaatttcattgttagccacgaatctaatttcacctcttgtacctaccttctgcaggatccaggaactgagaataatccctacttgggtttcctttacacatcatttcaagaaagagctacatttatatcccatggcaatactgcaaggcacgccaaggagtacggggaccttaagctggctcagatatgtgggacaatagcagctgatgagaagcgccatgagacagcttacaccaagatagtggagaagctcttcgagattgatcctgactacacagttcttgcatttgctgacatgatgaggaagaagatctcaatgcctgctcatctgatgtatgacggcaaggacgacaacttgttcgagcatttcagcgctgtggcacagcggctgggtgtctacactgcaagagactatgccgacatcctggagttcttggtccagaggtggaaagtcgcagatctcaccgggctgtccggagaagggagaagggctcaggatttcgtctgcacgttggcgccgagaatcaggcggctggatgaaagagcccaagcaagagctaagcaagcgcctgttattcctttcagctgggtttatgaccgcaaagtgcagctttgatcatgatcagtgagcaaccgagactgcatcctatatattggttctaagatatgaggttctctatatggaaaaaaatctaggttatctagctggggtagaatgcaattacctgtccatctgccctcacaaaatctgttgtcttttaagttgataacagtgtcgatgagtctggtgagaagctgatgtgagatgcaacagagtgaacttatgttgtattgatgtgagatgagtatggtgacatttatgtgtacttgcaggttttacatgacttgtataagttttaaagtaataatggagatttgtatacagacaagcgtgtgcactgtcgcatgattaagtagtctaaaatccagactatcttttgtgctctgaatttagcagtaataagattgatcggcttgttcgttttg</dnaseqindica>|
| + | Shelley IJ, Nishiuchi S, Shibata K, Inukai Y. SLL1, which encodes a member of |
| − | Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001059129.1 RefSeq:Os04g0379900]|
| + | the stearoyl-acyl carrier protein fatty acid desaturase family, is involved in |
| − | }}
| + | cell elongation in lateral roots via regulation of fatty acid content in rice. |
| − | [[Category:Genes]] | + | Plant Sci. 2013 Jun;207:12-7. doi: 10.1016/j.plantsci.2013.01.003. Epub 2013 Feb |
| − | [[Category:Japonica mRNA]]
| + | 15. PubMed PMID: 23602094. |
| − | [[Category:Oryza Sativa Japonica Group]] | + | |
| − | [[Category:Japonica Genes]]
| + | </ref> |
| − | [[Category:Japonica Chromosome 4]] | + | |
| − | [[Category:Chromosome 4]]
| + | </references> |
| | + | |
| | + | ==Structured Information== |
| | + | [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 4]] |
