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| − | {{JaponicaGene|
| + | The rice '''''Os10g0122600''''' was reported as '''''OsSNDP1''''' in 2013 <ref name="ref1" /> by researchers from Korea. |
| − | GeneName = Os10g0122600|
| |
| − | Description = Cellular retinaldehyde binding/alpha-tocopherol transport family protein|
| |
| − | Version = NM_001070603.2 GI:297610047 GeneID:4348005|
| |
| − | Length = 3785 bp|
| |
| − | Definition = Oryza sativa Japonica Group Os10g0122600, complete gene.|
| |
| − | Source = Oryza sativa Japonica Group
| |
| | | | |
| − | ORGANISM Oryza sativa Japonica Group
| + | ==Annotated Information== |
| − | Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
| + | [[File:125-Os10g0122600.png|right|thumb|327px|'''Figure 1.''' ''Ds24419 shows a short-root-hair phenotype.<ref name="ref1" />.'']] |
| − | Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
| + | ===Gene Symbol=== |
| − | clade; Ehrhartoideae; Oryzeae; Oryza.
| + | *'''''Os10g0122600''''' '''''<=>''''' '''''OsSNDP1,SNDP1''''' |
| − | |
| + | ===Function=== |
| − | Chromosome = [[:category:Japonica Chromosome 10|Chromosome 10]]|
| + | * '''''OsSNDP1''''' encodes a Sec14-nodulin domain-containing protein. |
| − | AP = Chromosome 10:1426573..1430357|
| + | * '''''OsSNDP1''''' is involved in growth of root hairs. |
| − | CDS = 1426573..1426590,1426838..1426912,1427106..1427464,1427551..1427656,1428091..1428207<br>,1428319..1428420,1428520..1428613,1428697..1428746,1428833..1428934<br>,1429029..1429106,1429189..1429455,1429573..1429672,1429757..1430039<br>,1430312..1430357|
| + | * '''''OsSNDP1''''' plays a critical role in root hair elongation in rice |
| − | GCID = <gbrowseImage1>
| + | ===Phenotypic analysis=== |
| − | name=NC_008403:1426573..1430357
| + | * The lengths of root hairs at the root hair maturation region were compared between wild type and 5-day-old seedlings of the mutant (Fig. 1a, b), and the root hairs of mutants were only 16 % as long as those of wild type plants. |
| − | source=RiceChromosome10
| + | * Mutant root hairs did not become fully elongated even if roots were grown for a longer time, which implies that shortening of root hairs was not due to a slow growth rate. |
| − | preset=GeneLocation
| + | * Under the same growth conditions, the length of primary roots was similar between mutants and wild type (Table 1 and Online Resource 1). |
| − | </gbrowseImage1>| | + | * Therefore, the mutants showed a defect that was specific to root hair development. |
| − | GSID = <gbrowseImage2>
| + | |
| − | name=NC_008403:1426573..1430357 | + | You can also add sub-section(s) at will. |
| − | source=RiceChromosome10
| + | |
| − | preset=GeneLocation
| + | ==Labs working on this gene== |
| − | </gbrowseImage2>|
| + | * Division of Applied Life Science (BK21 Program), Plant Molecular Biology and Biotechnology Research Center (PMBBRC), Gyeongsang National University, Jinju 660-701, Korea |
| − | CDNA = <cdnaseq>atgacagaagtcctgtcgagaccgctcgaacaccgtctaagctctgcaaccttagacggtcactatgaagagaagaggaaatccaatgttgaatactcagaggatgagaagaaagccaaaatcatgtcactgaagaagaaggcaatgagttcttcacaaaaattaaggcattcaatgaagaaggggaggaggagtagcaaggtcatgtccatctcaattgccgatgaacgtgatcctgaagaggtgcaggctgtagatgccttccgtcagctccttatacttgaagagttgctaccatctcagcatgatgattaccacatgatgctaaggtttttgaaggcaagaaagtttgatgttgagaaggcaaagcaaatgtgggctgacatgttgcggtggagaaaggaatttggtgcagataccattcttgaggattttgaatttgaagaagctggcaaggtggcagaatgctatcctcaaggttatcatggggttgataaggaaggaaggcctgtctacattgaacgacttggacagatcgatgtcaataggctaatgcaggtcaccacaatggatcgttttatcaagaaccatgttagggagtttgagaagaactttgctgttaagttcccagcttgctcaattgctaccaagtgccacattgatcagagcacaacaattcttgatgtgcaaggggtggggatgaaacaattcagcaaagctgcaagagaccttattggtcagcttcaaaagattgatggtgataactaccctgagacactgtgtcgaatgttcatcattaatgctgggccgggattccgacttctttggagcacagtgaagagtttccttgacccaaagaccacagcaaagattcatgtgttgggcaacaagtaccagagcaagcttcttgaggtgattgatgctagtgagctgccggagttttttggtggaacttgccaatgtgaaggtggttgtatgaaggctgacaagggcccctggaaggatgatgaagtcatgaagatggttcaaagcggggttgggtggtgtggaaatctcaatttgaatcatctagaggctgaggagaaaatgatgatttgtgaagatgacaccatgtacaccaagaagcaggagtctttcaaagatgaagggcgcactttgtcaagaaaaatatctcgtgcccgaattgaacatcctacactgtcgcctgtttgtgaggaacttcctcctatgatgcttcctaccccaggatcaccttattcttgtgatgttccaatggtagagaaggccatagatgccatttgccagagtaagggatcacgagatgagaatgtcgcaataaccaaagccattgtaaatgcctctaacggatccaaccctccactctttgggggtgtcatggctcttgtcatgagcattgcaacaatgctccgtgttagccgcaacatgccaaagaaggtacttggtgctacccttggggcacaaagtacatccaaaatccaagcacaacagctatccaagatatcaatggaggctgtgtcagcagctgaatatgcttcttctacaaagcgcctatctgatatcgaggagaaggtcattgcgattctcaccaagcctgcagaaatgccagctgataaggaggagatgctaaagactgccgtcagccgtgttagtgcattggaggaggagcttgccgcgaccaagaaggccttgcaggagactcttgagcgacaagaggagatcatggcatacattgagaagaaaaagaagaagaaaagcaagcgtttgtttcgttggtaa</cdnaseq>|
| + | * Department of Plant Sciences, University of Oxford, South Parks Road, Oxford OX1 3RB, UK |
| − | AA = <aaseq>MTEVLSRPLEHRLSSATLDGHYEEKRKSNVEYSEDEKKAKIMSL KKKAMSSSQKLRHSMKKGRRSSKVMSISIADERDPEEVQAVDAFRQLLILEELLPSQH DDYHMMLRFLKARKFDVEKAKQMWADMLRWRKEFGADTILEDFEFEEAGKVAECYPQG YHGVDKEGRPVYIERLGQIDVNRLMQVTTMDRFIKNHVREFEKNFAVKFPACSIATKC HIDQSTTILDVQGVGMKQFSKAARDLIGQLQKIDGDNYPETLCRMFIINAGPGFRLLW STVKSFLDPKTTAKIHVLGNKYQSKLLEVIDASELPEFFGGTCQCEGGCMKADKGPWK DDEVMKMVQSGVGWCGNLNLNHLEAEEKMMICEDDTMYTKKQESFKDEGRTLSRKISR ARIEHPTLSPVCEELPPMMLPTPGSPYSCDVPMVEKAIDAICQSKGSRDENVAITKAI VNASNGSNPPLFGGVMALVMSIATMLRVSRNMPKKVLGATLGAQSTSKIQAQQLSKIS MEAVSAAEYASSTKRLSDIEEKVIAILTKPAEMPADKEEMLKTAVSRVSALEEELAAT KKALQETLERQEEIMAYIEKKKKKKSKRLFRW</aaseq>|
| + | * Genomics Division, Department of Agricultural Biotechnology, National Academy of Agricultural Science (NAAS), RDA, Suwon, Korea |
| − | DNA = <dnaseqindica>3768..3785#3446..3520#2894..3252#2702..2807#2151..2267#1938..2039#1745..1838#1612..1661#1424..1525#1252..1329#903..1169#686..785#319..601#1..46#atgacagaagtcctgtcgagaccgctcgaacaccgtctaagctctggtaagtaaagcaaataatggtcacaaccatttcttattgtttaaagtggattattaagctctaatactatctttttttttattaaaaactcattatattcccttatgtctcaaagtataaacattattttcagatgaagtgtatgccttttccccaatgacattcttctacttcactatcacagaattaatttctaacttaactgttcagaaaatatttagaatttggtatattacaatatacatgactgactaacatacacgatgtgtcagcaaccttagacggtcactatgaagagaagaggaaatccaatgttgaatactcagaggatgagaagaaagccaaaatcatgtcactgaagaagaaggcaatgagttcttcacaaaaattaaggcattcaatgaagaaggggaggaggagtagcaaggtcatgtccatctcaattgccgatgaacgtgatcctgaagaggtgcaggctgtagatgccttccgtcagctccttatacttgaagagttgctaccatctcagcatgatgattaccacatgatgctaaggtgtataatctgaaaatagcacttcatgttgttatttagtttcaaatgtgaaaacaagtattactaaaattcgagattacacaggtttttgaaggcaagaaagtttgatgttgagaaggcaaagcaaatgtgggctgacatgttgcggtggagaaaggaatttggtgcagataccattcttgaggtaattgcatctatcaaataggttaaggttaaactatatttggactaatccttttatggttgatacatacctttgtttataagcagttgacacatttttcatcaaattctatctcaggattttgaatttgaagaagctggcaaggtggcagaatgctatcctcaaggttatcatggggttgataaggaaggaaggcctgtctacattgaacgacttggacagatcgatgtcaataggctaatgcaggtcaccacaatggatcgttttatcaagaaccatgttagggagtttgagaagaactttgctgttaagttcccagcttgctcaattgctaccaagtgccacattgatcagagcacaacaattcttgatgtgcaaggggtggtatgtatgtgcgatatttggataattcattaaattattgcacttttactatttataatctaagagaaaaatgcatttttaggggatgaaacaattcagcaaagctgcaagagaccttattggtcagcttcaaaagattgatggtgataactaccctgaggtaatgccctcaatgtaaaatatattggttgtaattctgcaaaaatttgtactagatttattaatattcttacttcatgtaattgtttgcctagacactgtgtcgaatgttcatcattaatgctgggccgggattccgacttctttggagcacagtgaagagtttccttgacccaaagaccacagcaaagattcatgttagtgttcttccaatacattgtctaggagtgctcaacttgaagattgattattgataatctgtgacttctgtgcatttctttaggtgttgggcaacaagtaccagagcaagcttcttgaggtgattgatgctaggtagaacacccgatgctctaagttaaccatcatatttgaagacaatgttcaccattttaatgttattaatttccgttgtccagtgagctgccggagttttttggtggaacttgccaatgtgaaggtggttgtatgaaggctgacaagggcccctggaaggatgatgaagtcatgaaggtgactgctccaatctgatcctttatccttgaacaaattcttaaattacagttgataagggaaaaggaactcaaaatttctatgctatattatgtttagatggttcaaagcggggttgggtggtgtggaaatctcaatttgaatcatctagaggctgaggagaaaatgatgatttgtgaagatgacaccatgtacaccaaggtagcaaagatattacccgctctttgcagtaacacattcatatttaagtatttctaaatgcattggatcataatacttagacatctgttattttatttgtgtaaaataaagaagcaggagtctttcaaagatgaagggcgcactttgtcaagaaaaatatctcgtgcccgaattgaacatcctacactgtcgcctgtttgtgaggaacttcctcctatgatgcttcctgtgagttacgctttatctccgatgaatttccactattgttctagaaaaagaaatgccactattgtcctactaacaatgacatctttgtactttaacaaatttgtagtgttttttctttgcgcaaacaaaattgtagttagtgttgaaccatacggctaaaaggatttctcatgccttgtggatgaaacaccagaatgaaaaaaaatgagtcttaacttataagcttaagcgggttcgtcacttgataatgcagttgataagcacgaacaagtaacttcatgatgatatttcatttccagggaaactgtaaaacctcaatttttcccaagattagtcatcatataaattttcattcttgtggtgtattggttcacatatttcttttataaattcctaagcttagtcctaatatagaaggagtttttgtaatgcagaccccaggatcaccttattcttgtgatgttccaatggtagagaaggccatagatgccatttgccagagtaagggatcacgagatgagaatgtcgcaataaccaaaggttaaccattaaacaatcttgtgacctaatattattactcttttgttagtctttaactgacagattggacaatccttttcttgtagccattgtaaatgcctctaacggatccaaccctccactctttgggggtgtcatggctcttgtcatgagcattgcaacaatgctccgtgttagccgcaacatgccaaagaaggtacttggtgctacccttggggcacaaagtacatccaaaatccaagcacaacagctatccaagatatcaatggaggctgtgtcagcagctgaatatgcttcttctacaaagcgcctatctgatatcgaggagaaggtcattgcgattctcaccaagcctgcagaaatgccagctgataaggaggagatgctaaagactgccgtcagccgtgttagtgcattggaggaggagcttgccgcgaccaagaaggtgagtttgtttgcaccttactgatgataagaacattattattacattaccaaagtttatgttttaattcctgtgtatacatcttaatcccatagatcggtattattaaatgtgttgagactaacaaattatatgttgttctactattcttactaaaccatttctaaaacacgcctgttatatgttcttttaggccttgcaggagactcttgagcgacaagaggagatcatggcatacattgagaagaaaaagaagaagaaaagcaaggtaacccaaaaaaagggaaagtaaaaggcatccttttgctgtagtattgttgtgacccttaattactaaacatttttccccttgtcactgacccatgcactaaaatatacgagatttccaccaaataatttgtgttgcttgttctctttatgaactcatctactaaatatttatgctcaaaaaaagttttcccttcctattctttgatttcataaagttaacattgccactgaaatttcacttgcagcgtttgtttcgttggtaa</dnaseqindica>|
| + | * Rice Breeding and Cultivation Division, Department of Rice and Winter Cereal Crop (NICS), RDA, Iksan, Korea |
| − | Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001070603.2 RefSeq:Os10g0122600]|
| + | ==References== |
| − | }}
| + | <references> |
| − | [[Category:Genes]] | + | * <ref name="ref1"> |
| − | [[Category:Japonica mRNA]]
| + | Huang J, Kim CM, Xuan YH, Park SJ, Piao HL, Je BI, Liu J, Kim TH, Kim BK, Han |
| − | [[Category:Oryza Sativa Japonica Group]] | + | CD. OsSNDP1, a Sec14-nodulin domain-containing protein, plays a critical role in |
| − | [[Category:Japonica Genes]] | + | root hair elongation in rice. Plant Mol Biol. 2013 May;82(1-2):39-50. doi: |
| − | [[Category:Japonica Chromosome 10]]
| + | 10.1007/s11103-013-0033-4. Epub 2013 Mar 1. PubMed PMID: 23456248. |
| − | [[Category:Chromosome 10]]
| + | </ref> |
| | + | </references> |
| | + | |
| | + | |
| | + | ==Structured Information== |
| | + | [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 10]] |
