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| − | {{JaponicaGene|
| + | The rice '''''Os10g0402200''''' was reported as '''''OsORC3''''' in 2014 <ref name="ref1" /> by researchers from China. |
| − | GeneName = Os10g0402200|
| |
| − | Description = Origin recognition complex subunit 3, N-terminal domain containing protein|
| |
| − | Version = NM_001071085.1 GI:115481913 GeneID:4348571|
| |
| − | Length = 5532 bp|
| |
| − | Definition = Oryza sativa Japonica Group Os10g0402200, complete gene.|
| |
| − | Source = Oryza sativa Japonica Group
| |
| | | | |
| − | ORGANISM Oryza sativa Japonica Group
| + | ==Annotated Information== |
| − | Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
| + | [[File:127-Os10g0402200.png|right|thumb|327px|'''Figure 1.''' ''Phenotypic characterization of the orc3 mutant.<ref name="ref1" />.'']] |
| − | Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
| + | ===Gene Symbol=== |
| − | clade; Ehrhartoideae; Oryzeae; Oryza.
| + | *'''''Os10g0402200''''' '''''<=>''''' '''''OsORC3,ORC3''''' |
| − | |
| + | ===Function=== |
| − | Chromosome = [[:category:Japonica Chromosome 10|Chromosome 10]]|
| + | * '''''OsORC3''''' plays a crucial role in the emergence of lateral root primordia |
| − | AP = Chromosome 10:13958301..13963832|
| + | |
| − | CDS = 13958301..13958406,13958535..13958702,13958940..13959067,13959180..13959255,13959431..13959508<br>,13959690..13959769,13960116..13960185,13960435..13960592,13960930..13961020<br>,13961084..13961160,13961317..13961391,13961503..13961776,13962616..13962746<br>,13962859..13963028,13963118..13963292,13963428..13963676,13963782..13963832<br>|
| + | ===Phenotypic analysis=== |
| − | GCID = <gbrowseImage1>
| + | * When grown in hydroponic solution for 7 days at 34°C, the orc3 mutant showed normal primary root growth, but, in contrast to the wild-type (WT), lacked LRs (Figure 1a–e). Interestingly, LR development in the orc3 mutant was sensitive to temperature. |
| − | name=NC_008403:13958301..13963832
| + | * Below 26°C, plant growth and LR development were similar in the mutant and WT (Figure 1g–j); however, no LRs were visible at temperatures above 34°C, and LR number was reduced with increasing temperature when the temperature was increased from 26 to 34°C. |
| − | source=RiceChromosome10
| + | * Additionally, orc3 showed a significant reduction in plant stature and seed setting when grown on soil at 34°C/26°C (12 h day/12 h night) (Figure 1f,j–l). |
| − | preset=GeneLocation
| + | * However, the anthers and stigma developed normally, and pollen viability was not significantly different in the orc3 mutant compared with the WT at both 34°C/26°C and 30°C/22°C. |
| − | </gbrowseImage1>|
| + | |
| − | GSID = <gbrowseImage2>
| + | ===Expression=== |
| − | name=NC_008403:13958301..13963832
| + | * '''''OsORC3''''' was strongly expressed in regions of active cell proliferation, including the primary root tip, stem base, lateral root primordium, emerged lateral root primordium, lateral root tip, young shoot, anther and ovary. |
| − | source=RiceChromosome10
| + | |
| − | preset=GeneLocation
| + | You can also add sub-section(s) at will. |
| − | </gbrowseImage2>| | + | |
| − | CDNA = <cdnaseq>atggctgcgccgcccggtgaggctccgctcaccgccgccaccaacatcgagccgttctatgtcctccacaagggcggcgccgctgcctcgtcgtcctcctcgtcggctccctcgctgccgtcgtccggccgggcgcgccgccggatcgacgtttccgggctggcatctcccaaccccaaacccgggaagagatcccgcgacgacgacgccgctgaggacgacgacgacgacgagctgtacgagcggctccgcctcgacgccttccaccgcgtttggtccaagatccagtccaccatcaatgaggttcttcgggggatcagcctcaagctgttcgaccaggtgctgcgatgggtgcaggaatccttctccgcagtccgctccattgcgagaccttccgcagccgaggtgcggcagccataccctctcctcaccgatgtgatctgcaggaagataccgacggcttttgttctcaccaagaatgcggagttcgttgacgacatcacgacattccgggatcttgcagagtatcttgagtccaatggatgtcacctggccaagctgtcggcgactgaattatcggaaaaaaatggagttggttgttgcttcaggagcttgttgaggcagctactttcagatgttccagatgtagcggatatatttgcacttgcatcttggtactctgcagctgagaactatgatcagcctatagtcgtcgtaattgatgatttagagcaatgctctggtgatgtcctgggagagcttgtgatgatgctaagcgagtgggtgattaaaattcccatcttctttgtgatggggattgcaaccacccttgacgcaccaaggaaactactctcatcagaagatcttcaaagattagagccgtgcaagctgaccttggggtctccttctgatagaatgaacgcacttgttgaggctatccttgtcaaaccatgtgctggattctgtatcagtcatgaagttgcagttttccttagaaattactttttcaagcatgatgggaccataacatcttttattagtgctctcaagcttgcttgtagtaagcacttctctgtcgaacctctgagcttcttgtgcatgggaatgcttgaagaggatcgtgagaacttctggcatgataagtttaatgcactaccccaagaattgcggaaatatgcatctggtctcccgtcatgcacaagggaaaaggactcaaccaagtctggcgacaatatggttgacgggttgtctgagcttatgaatattcaaaaagattggagttcagttctcttgtgcttgtatgaagctggaaaacatggtaaagtgcaacttttggatattttctgtgaggctgtaaaccctgacctgcacactcagaaggcacccaatctaccaaatgagaagtcaggaactagtagaagatttatagatcaggtgatggatacaataaggtaccttccagtggaaacactattttgtcttctagaagtttggagcatccatctaaacgggatggataagataacaaacaaggtgaaagagcttcagtccaccacaatcagtacagacagtgtgaggatcacaaaggataagtggcctaggagatcaacaaatagtactggaaatagtacagtagcactgaatgataaagtggctatgctgttggatgatgttaccaggaaatttctggtctctgttgagtgtttaccttttcatgaaatcgtctgtttcaagaatgttagcattcttcaatctgctttaattggaaatccgagaagaatggtccagcttgatctagtcaagtcacacaaacatcttaaatgctcttgctgcaggaagaatggaattgctgtgttggcatccatgcatgatacatcaattatgtgcaatctagcccaagaatatggtgatgtaatcaaccttcatgactggtacatatctttcgatggcattatcaatagcgtgcattcaaaaatcaaaaggaaaccgcacacatctccctcgaaaaagaaatcaaaacccgttgctgcggagagtgaagccatgatccaagcaaggttttgcagagctgtcaccgagctacagatcaccggacttcttcggatgccgagcaagagaaggccagatcttgtgcagagaatcgcattcggcctttga</cdnaseq>|
| + | ==Labs working on this gene== |
| − | AA = <aaseq>MAAPPGEAPLTAATNIEPFYVLHKGGAAASSSSSSAPSLPSSGR ARRRIDVSGLASPNPKPGKRSRDDDAAEDDDDDELYERLRLDAFHRVWSKIQSTINEV LRGISLKLFDQVLRWVQESFSAVRSIARPSAAEVRQPYPLLTDVICRKIPTAFVLTKN AEFVDDITTFRDLAEYLESNGCHLAKLSATELSEKNGVGCCFRSLLRQLLSDVPDVAD IFALASWYSAAENYDQPIVVVIDDLEQCSGDVLGELVMMLSEWVIKIPIFFVMGIATT LDAPRKLLSSEDLQRLEPCKLTLGSPSDRMNALVEAILVKPCAGFCISHEVAVFLRNY FFKHDGTITSFISALKLACSKHFSVEPLSFLCMGMLEEDRENFWHDKFNALPQELRKY ASGLPSCTREKDSTKSGDNMVDGLSELMNIQKDWSSVLLCLYEAGKHGKVQLLDIFCE AVNPDLHTQKAPNLPNEKSGTSRRFIDQVMDTIRYLPVETLFCLLEVWSIHLNGMDKI TNKVKELQSTTISTDSVRITKDKWPRRSTNSTGNSTVALNDKVAMLLDDVTRKFLVSV ECLPFHEIVCFKNVSILQSALIGNPRRMVQLDLVKSHKHLKCSCCRKNGIAVLASMHD TSIMCNLAQEYGDVINLHDWYISFDGIINSVHSKIKRKPHTSPSKKKSKPVAAESEAM IQARFCRAVTELQITGLLRMPSKRRPDLVQRIAFGL</aaseq>|
| + | * The State Key Laboratory of Plant Physiology and Biochemistry, College of Life Sciences, Zhejiang University, 310058 Hangzhou, China |
| − | DNA = <dnaseqindica>5427..5532#5131..5298#4766..4893#4578..4653#4325..4402#4064..4143#3648..3717#3241..3398#2813..2903#2673..2749#2442..2516#2057..2330#1087..1217#805..974#541..715#157..405#1..51#atggctgcgccgcccggtgaggctccgctcaccgccgccaccaacatcgaggtgcgtttccatctctctctctctctctctcaggcggttgctgcccctctcgccggccggcgggcgccgctgctgctctgggattaacttccgttctccttgcagccgttctatgtcctccacaagggcggcgccgctgcctcgtcgtcctcctcgtcggctccctcgctgccgtcgtccggccgggcgcgccgccggatcgacgtttccgggctggcatctcccaaccccaaacccgggaagagatcccgcgacgacgacgccgctgaggacgacgacgacgacgagctgtacgagcggctccgcctcgacgccttccaccgcgtttggtccaagatccagtccaccatcaatgtgcaaactcaattcccccatattccatcgattcgtttactactcactcgcttaattcctcagcaattgcagaatctgacgagtgcgatttctcatcttgggattgatccaattttcgattgctcgtgtgggcaggaggttcttcgggggatcagcctcaagctgttcgaccaggtgctgcgatgggtgcaggaatccttctccgcagtccgctccattgcgagaccttccgcagccgaggtgcggcagccataccctctcctcaccgatgtgatctgcaggaagataccgacggcttttgttctcaccagtgagaatccgccatcaatttgttcagctggttggtaggtgtggcgaagaattgctcggtttgatggtttgggcttcttaattttgcagagaatgcggagttcgttgacgacatcacgacattccgggatcttgcagagtatcttgagtccaatggatgtcacctggccaagctgtcggcgactgaattatcggaaaaaaatggagttggttgttgcttcaggagcttgttgaggcagctactttcagatgttccagatgtgagtgacatggcctgctctcaagtcttttttagctgtactttacttgagagtttgagactggagtgcatagccttacttgttgtctgttctggttttgtcactcgaataggtagcggatatatttgcacttgcatcttggtactctgcagctgagaactatgatcagcctatagtcgtcgtaattgatgatttagagcaatgctctggtgatgtcctgggagagcttgtgatgatgctaaggtaaaatttatgtttcatagcattcaatgggtttaaacaactgcggttacatcaaacatgaagtacataaaagttgttttgaccacggttctataccttaatatggttgcttaacatatagcccctccgttctgaaatatttcttgttgtttagttcattttttaactagccaacgtcatacaaaaagaaacacagggagtatttgtttttatcttctctctctctctctagaaagagaggaaggatcctctcccatttctattatcagaagcaaaacagtgaccacaccatccagattacaagattaaggctaaaacagaccccaccttttagccctggatagcgtgatcccactattttcagctaaaaagtttcaagatgctaaaattttgaacgcaatcatgaagctaaactagagagcaactgctacattttcagattacagttcctaaatcacacataacaactcggtttcataaaccctccccggtttttgagccaaaacagcagcattttactttcataagcatccatgtcttctgtcttgccatcatgacacttccccttctatcccccttctagtcttctacttcagccttcttgtcatgcttcattataactgagatagcataaaagcataccaatttgttgtatgatatttttttctctgttttggtgtggaactcaccaatcccttgtttaatcctcttttagaagatattcttcttacaattaagaaaatgaacctggttttatctttcatttatatccttagtttcacctaataaaatttatagtcttgggtatgattttaacctgaatattctatctgttgcagcgagtgggtgattaaaattcccatcttctttgtgatggggattgcaaccacccttgacgcaccaaggaaactactctcatcagaagatcttcaaagattagagccgtgcaagctgaccttggggtctccttctgatagaatgaacgcacttgttgaggctatccttgtcaaaccatgtgctggattctgtatcagtcatgaagttgcagttttccttagaaattactttttcaagcatgatgggaccataacatcttttattagtgctctcaaggttggttcttcatgttaatcttaatctcttttcactgatgttaacaagttgttatttatgtttttccccttatttttgatggatgctagtactaaatcaaattttatgcagcttgcttgtagtaagcacttctctgtcgaacctctgagcttcttgtgcatgggaatgcttgaagaggatcgtgaggtctgttttattttcttccaaacataattcaatgttagctaattatgttcttctatcactaactggaaaataaatatttttaagtttccatatctttcggtacaaactaatatcttgtattgacatggatttatttctttctgtcttatcccacagaacttctggcatgataagtttaatgcactaccccaagaattgcggaaatatgcatctggtctcccgtcatgcacaaggtacaatactgactttaaagattttcaccagtaatatactttgtctaaaaatttccattgcagggaaaaggactcaaccaagtctggcgacaatatggttgacgggttgtctgagcttatgaatattcaaaaagattggagttcagttctcttggtaagttttctttgttctccagaactttcttatgtttctagaaaacagagttgcccagctattttttttctttaagactcagattttcaagttcatttgtctattgaccttgtgatgtctaaataaaagctaacgaaatgtggtttactcgtgatctaaacttgatgggtaccaacaaatgtgttaccatttgcaattagagacagtggaattctggattatcacttcctttgtacttatgaatacttggataatatcatgcaaagggcctttttttctgcttaagttatagagccataccatcgaataatgtatttcgtatgttgtgattatgcagtgcttgtatgaagctggaaaacatggtaaagtgcaacttttggatattttctgtgaggctgtaaaccctgacctgcacactcagaaggcacccaatctaccaaatgagaagtcaggaactagtagaagatttatagatcaggtgatggatacaataaggtatgttgatgggagttggtttcaggtttttggatgcgaagcttctgattcattgctctagattatctagcggcatttagtagggtattgttgattaatatccattgtagcttataattactatgggagcaaaggggaatttgggattgtaaaattttgggggcagcgacataatagtaccgactgatggaggtggaccctttactgtaatgcttagctcctcttgatgagtgtgttttattggatcaggtaccttccagtggaaacactattttgtcttctagaagtttggagcatccatctaaacgggatggataaggtatgcttattgctaatttttgtagaaaactttttggatatgctatgaactgccataccatatgggttcaagtttcagatggccactttacttggttgctgtctgcaatctttattcaaaacattctgaagggagataattgcttttggtcatttgatgttcgaagtaataccttttgtgtcgagatggcttgagcatttgtcacagtttttgttttgaccaagtcagataactcattcctagtttttaccagttgaaggcttctggcatagagcctagtgtactaaatgtactttttaaaactgtggtgtgactctagttgagaatgtgttcattctaatcccagataacaaacaaggtgaaagagcttcagtccaccacaatcagtacagacagtgtgaggatcacaaaggataagtggcctaggtacttcctgctttattccatatttcatttaaaaattttattagccaaacaaatattaagaatgccaaaacaagttgcaatagcataatgaggttgagtatctctagtggacgaatctgtactgcatttttcagtttcgattatctgaaactggctgaaaatcattttcatggcatatcaggagatcaacaaatagtactggaaatagtacagtagcactgaatgataaagtggctatgctgttggatgatgttaccaggtaaatgttattataagattgaatcaactaagtactattttaatcttatataacttactagatctatttattcagatgattagtacaattgaactgggattatctttctctattttgtttgcttttcaataacttaaagttctttcagcatctaatgcctagatatttcaaacaggaaatttctggtctctgttgagtgtttaccttttcatgaaatcgtctgtttcaagaatgttagcattcttcaatctgtaagtttttcctttacagaaagaaagccggtaccattatgtactacttacttacataataatctataactatcaaattaactgttttaaattctatcacatctcattgtaggctttaattggaaatccgagaagaatggtccagcttgatctagtcaagtcacacaaacatcttaaatgctcttgctgcaggaagaatggaattgctgtgttggcatccatgcatgatacatcaattatgtaagtcctggaaagtattcttattgagcggcgcatctggtggaaatagccatatggtgaaaacttaatcaattggcatactaagttctaatgtttggaatctaaagctcaaaataacagacgtcattctgttgacatagcatgccatgttaaccatcctttatcctgatgtgatcattaaacccattttttaatgtatttttatgctgacacgtattatcctttttaatcttgcaggtgcaatctagcccaagaatatggtgatgtaatcaaccttcatgactggtacatatctttcgatggcattatcaatagcgtgcattcaaaaatcaaaaggaaaccgcacacatctccctcgaaaaagaaatcaaaacccgttgctgcggagagtgaagccatgatccagtatccttgaactaacctttttattacaatttaatatactaaacgtccacaaatatatttgtacagatactagggcagcatttcttgtaatcattaaatccaggtaatccttgactcattggttccagagcaaggttttgcagagctgtcaccgagctacagatcaccggacttcttcggatgccgagcaagagaaggccagatcttgtgcagagaatcgcattcggcctttga</dnaseqindica>|
| + | |
| − | Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001071085.1 RefSeq:Os10g0402200]|
| + | ==References== |
| − | }}
| + | <references> |
| − | [[Category:Genes]] | + | * <ref name="ref1"> |
| − | [[Category:Japonica mRNA]]
| + | Chen X, Shi J, Hao X, Liu H, Shi J, Wu Y, Wu Z, Chen M, Wu P, Mao C. OsORC3 is |
| − | [[Category:Oryza Sativa Japonica Group]] | + | required for lateral root development in rice. Plant J. 2013 Apr;74(2):339-50. |
| − | [[Category:Japonica Genes]] | + | doi: 10.1111/tpj.12126. Epub 2013 Mar 16. PubMed PMID: 23346890. |
| − | [[Category:Japonica Chromosome 10]]
| + | </ref> |
| − | [[Category:Chromosome 10]]
| + | </references> |
| | + | |
| | + | |
| | + | ==Structured Information== |
| | + | [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 10]] |
