Difference between revisions of "Os03g0181100"

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(Created page with "{{JaponicaGene| GeneName = Os03g0181100| Description = ZIM domain containing protein| Version = NM_001055703.1 GI:115451134 GeneID:4331834| Length = 937 bp| Definition = ...")
 
(Annotated Information)
 
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{{JaponicaGene|
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The rice '''''Os03g0181100''''' was reported as '''''TIFY11b''''' in 2012 <ref name="ref1" /> by researchers from Japan.  
GeneName = Os03g0181100|
 
Description = ZIM domain containing protein|
 
Version = NM_001055703.1 GI:115451134 GeneID:4331834|
 
Length = 937 bp|
 
Definition = Oryza sativa Japonica Group Os03g0181100, complete gene.|
 
Source = Oryza sativa Japonica Group
 
  
  ORGANISM  Oryza sativa Japonica Group
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==Annotated Information==
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
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[[File:131-Os03g0181100.png|right|thumb|327px|'''Figure 2.''' ''Grain Sizes for Transgenic Plants Overexpressing TIFY11b in Ripening Seeds (prolamin promoter) and in the Whole Plant Body (ubiquitin promoter) and Control Plants (vector control)..<ref name="ref1" />.'']]
            Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
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===Function===
            clade; Ehrhartoideae; Oryzeae; Oryza.
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* Overexpression of Rice '''''TIFY11b''''' Gene Increases Grain Size through Enhanced Accumulation of Carbohydrates in the Stem
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* '''''TIFY11b''''' is a novel grain-size increasing gene.
Chromosome = [[:category:Japonica Chromosome 3|Chromosome 3]]|
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===Expression===
AP = Chromosome 3:4227220..4228156|
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* Mature leaves (the 4th leaf from the top frag leaf) of TIFY11b-overexpressing lines were 1.09 to 1.18-fold longer than corresponding leaves of WT plants (Fig. 3A).  
CDS = 4227418..4227981|
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* Microscopic observation of the leaf surface revealed that it was filled with cells of similar sizes among the transgenic lines and WT plants (Fig. 3B, C), suggesting that the elongation caused by the overexpression of TIFY11b was due to an increase in the number, not the size, of the cells.
GCID = <gbrowseImage1>
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name=NC_008396:4227220..4228156
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You can also add sub-section(s) at will.
source=RiceChromosome03
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preset=GeneLocation
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==Labs working on this gene==
</gbrowseImage1>|
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* Hokuriku Research Center, National Agricultural Research Center, 1-2-1 Inada, Joetsu, Niigata 943-0193, Japan
GSID = <gbrowseImage2>
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* Division of Genome and Biodiversity Research, National Institute of Agrobiological Sciences, 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan
name=NC_008396:4227220..4228156
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* Division of Plant Sciences, National Institute of Agrobiological Sciences, 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan
source=RiceChromosome03
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preset=GeneLocation
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==References==
</gbrowseImage2>|
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<references>
CDNA = <cdnaseq>atggcgatggaggggaagagcaggaggttcgcggtggcgtgcggggtgctcagccagtacgtgagggcggagcagaagatggcggcggcggcgggggcggcaccggcgagggcggtgacgacgctgagcctgatgcctggggcggaggtggtcgtcgaggaggaggagcggagggaggttggggaggaggaggcggggccagcgacggcgccggccgcgccgctgaccatcttctacggtgggaggatggtcgtcttcgaggacttccccgcggacaaggcggcggaggtgatgcgcatggcctcctccgggatggcggcggcgccggctcagcgggagggcgccgcgctcgcggacatgcccatcatgaggaaggcgtcgctgcagcggttcttcgccaagcgcaaggaccgcctcgcggcgaccaccccctacgcccgcccgtcgccggcggagaccaaggcctccgagccggaggagaagaagacgcccacctcatggctggacctcgccgcctccgcctccgccgccgcgcgccgtgacagcctcaccatcgcgctgtga</cdnaseq>|
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* <ref name="ref1">
AA = <aaseq>MAMEGKSRRFAVACGVLSQYVRAEQKMAAAAGAAPARAVTTLSL                    MPGAEVVVEEEERREVGEEEAGPATAPAAPLTIFYGGRMVVFEDFPADKAAEVMRMAS                    SGMAAAPAQREGAALADMPIMRKASLQRFFAKRKDRLAATTPYARPSPAETKASEPEE                    KKTPTSWLDLAASASAAARRDSLTIAL</aaseq>|
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Hakata M, Kuroda M, Ohsumi A, Hirose T, Nakamura H, Muramatsu M, Ichikawa H,
DNA = <dnaseqindica>199..762#gcttcctcctccttccccaacttgcctccaattccaagttccaaccctccacctccctatataacacagctcttcccaccccgtcaaatcccacgactcaaaaccaccaaaactcaccaagcaaagcaccagcgaggaagaacaagaaggaaggtgaagagaagccgcgttttgtttctcgcgaaagtgtttgttgatatggcgatggaggggaagagcaggaggttcgcggtggcgtgcggggtgctcagccagtacgtgagggcggagcagaagatggcggcggcggcgggggcggcaccggcgagggcggtgacgacgctgagcctgatgcctggggcggaggtggtcgtcgaggaggaggagcggagggaggttggggaggaggaggcggggccagcgacggcgccggccgcgccgctgaccatcttctacggtgggaggatggtcgtcttcgaggacttccccgcggacaaggcggcggaggtgatgcgcatggcctcctccgggatggcggcggcgccggctcagcgggagggcgccgcgctcgcggacatgcccatcatgaggaaggcgtcgctgcagcggttcttcgccaagcgcaaggaccgcctcgcggcgaccaccccctacgcccgcccgtcgccggcggagaccaaggcctccgagccggaggagaagaagacgcccacctcatggctggacctcgccgcctccgcctccgccgccgcgcgccgtgacagcctcaccatcgcgctgtgatctgcgcggctttgaccaaaaacgacttaagacgcgcgcgcgctctcagcgcgcaagaggattgattcactttgctcatacccatggcgacgtagagtttttaccgcttttgctatacttctttgtaaaattcgatagggagattgaattgatgggaaaccccttgtgcctgttc</dnaseqindica>|
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Yamakawa H. Overexpression of a rice TIFY gene increases grain size through
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001055703.1 RefSeq:Os03g0181100]|
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enhanced accumulation of carbohydrates in the stem. Biosci Biotechnol Biochem.
}}
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2012;76(11):2129-34. Epub 2012 Nov 7. PubMed PMID: 23132589.
[[Category:Genes]]
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</ref>
[[Category:Japonica mRNA]]
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</references>
[[Category:Oryza Sativa Japonica Group]]
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[[Category:Japonica Genes]]
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[[Category:Japonica Chromosome 3]]
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==Structured Information==
[[Category:Chromosome 3]]
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    [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 3]]

Latest revision as of 15:32, 19 October 2016

The rice Os03g0181100 was reported as TIFY11b in 2012 [1] by researchers from Japan.

Annotated Information

Figure 2. Grain Sizes for Transgenic Plants Overexpressing TIFY11b in Ripening Seeds (prolamin promoter) and in the Whole Plant Body (ubiquitin promoter) and Control Plants (vector control)..[1].

Function

  • Overexpression of Rice TIFY11b Gene Increases Grain Size through Enhanced Accumulation of Carbohydrates in the Stem
  • TIFY11b is a novel grain-size increasing gene.

Expression

  • Mature leaves (the 4th leaf from the top frag leaf) of TIFY11b-overexpressing lines were 1.09 to 1.18-fold longer than corresponding leaves of WT plants (Fig. 3A).
  • Microscopic observation of the leaf surface revealed that it was filled with cells of similar sizes among the transgenic lines and WT plants (Fig. 3B, C), suggesting that the elongation caused by the overexpression of TIFY11b was due to an increase in the number, not the size, of the cells.

You can also add sub-section(s) at will.

Labs working on this gene

  • Hokuriku Research Center, National Agricultural Research Center, 1-2-1 Inada, Joetsu, Niigata 943-0193, Japan
  • Division of Genome and Biodiversity Research, National Institute of Agrobiological Sciences, 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan
  • Division of Plant Sciences, National Institute of Agrobiological Sciences, 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan

References

  1. 1.0 1.1 Hakata M, Kuroda M, Ohsumi A, Hirose T, Nakamura H, Muramatsu M, Ichikawa H, Yamakawa H. Overexpression of a rice TIFY gene increases grain size through enhanced accumulation of carbohydrates in the stem. Biosci Biotechnol Biochem. 2012;76(11):2129-34. Epub 2012 Nov 7. PubMed PMID: 23132589.


Structured Information