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| − | {{JaponicaGene|
| + | The rice '''''Os03g0700400''''' was reported as '''''LOX3''''' in 2013 <ref name="ref1" /> by researchers from China. |
| − | GeneName = Os03g0700400|
| |
| − | Description = Similar to Lipoxygenase 1 (EC 1.13.11.12)|
| |
| − | Version = NM_001057528.1 GI:115454784 GeneID:4333821|
| |
| − | Length = 4402 bp|
| |
| − | Definition = Oryza sativa Japonica Group Os03g0700400, complete gene.|
| |
| − | Source = Oryza sativa Japonica Group
| |
| | | | |
| − | ORGANISM Oryza sativa Japonica Group
| + | ==Annotated Information== |
| − | Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
| + | [[File:139-Os03g0700400.png|right|thumb|327px|'''Figure 1.''' ''Subcellular localization of Os03g0700400 in rice protoplasts.<ref name="ref1" />.'']] |
| − | Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
| + | ===Gene Symbol=== |
| − | clade; Ehrhartoideae; Oryzeae; Oryza.
| + | *'''''Os03g0700400''''' '''''<=>''''' '''''Lox3*, lox3(t), OsLOX3,LOX3''''' |
| − | |
| + | ===Function=== |
| − | Chromosome = [[:category:Japonica Chromosome 3|Chromosome 3]]|
| + | * The rice '''''sLOX3''''' encodes Rice Seed Lipoxygenase 3 protein. |
| − | AP = Chromosome 3:28850496..28854897|
| + | * '''''sLOX3''''' might negatively affect seed longevity by facilitating colonization of particular seed pathogens. |
| − | CDS = 28850496..28850685,28851084..28851382,28852069..28852306,28852564..28852899,28852988..28853073<br>,28853169..28853276,28853384..28853691,28853770..28854033,28854126..28854897<br>|
| + | |
| − | GCID = <gbrowseImage1>
| + | ===Expression === |
| − | name=NC_008396:28850496..28854897
| + | * The '''''sLOX3''''' gene was highly expressed in roots, moderately in embryos and very weakly in leaves, leaf sheaths and stems. |
| − | source=RiceChromosome03
| + | |
| − | preset=GeneLocation
| + | ===Subcellular localization=== |
| − | </gbrowseImage1>|
| + | * Subcellular localization analysis showed that '''''sLOX3''''' protein was localized into the cytosol. |
| − | GSID = <gbrowseImage2>
| + | |
| − | name=NC_008396:28850496..28854897
| + | You can also add sub-section(s) at will. |
| − | source=RiceChromosome03
| + | |
| − | preset=GeneLocation
| + | ==Labs working on this gene== |
| − | </gbrowseImage2>| | + | * State Key Laboratory for Crop Genetics & Germplasm Enhancement, Jiangsu Provincial Center of Plant Gene Engineering, Nanjing Agricultural University, Weigang 1, Nanjing 210095, China |
| − | CDNA = <cdnaseq>atgctgggagggatcatcgacaccatcacggggtcgtcgaagcagtcgcggctcaagggcacggtggtgctcatgcgcaagaacgtcctcgacctcaacgacttcggcgccaccgtcatcgacggcctcggcgagttcctcggcaagggcgtcacctgccagctcatcagctccaccgccgtcgacccaaacaacggcaaccgggggaaggtgggggcggaggcgagcctggagcagtggctgacgagcagcctgccgtcgctgacgacgggggagtcgcggttcggcgtgacgttcgactgggacgtcgacaagctcggcgtgccgggggccatcatcgtcaagaaccaccacagcaacgagttcttcctcaagaccatcaccctcgacgacgtccccggccgcgccggcgccgtcgtcttcctcgccaactcctgggtctaccccgccgacaagtaccgttacgaccgcgtcttcttcgccaacgatgcctacctgccgagccagatgccggcggcgctgaagccgtaccgcgacgacgagctccgcaacctgcgcggcgacgaccagcagggcccctacgaggagcacgaccgcgtctaccgctacgatgtctacaacgacctcggctcccccgactccggcaaccctcgccccatcctcggcggctcccccgacaccccctaccctcgccgcggccgcaccggccgcaaacccaccaccaccgatccggactcggagagtaggctgtcgctggtggagcagatctacgtgccgcgggacgagcggttcgggcacctgaagatggcggacttcctgggctactcgatcaaggcgatcgcggaggggatcgtgccggcgatccgcacgtacgtggacaccacccccggcgagttcgactcgttccaggacatcctcgacctgtacgagggtggcctcaagctccccgatgtccccgcgctggaggagctccgcaagcgattcccgctccagctcgtcaaggacctcctccctgccgccggcgactatatcctcaagctccccatgcctcagattatcaaacaggacaaggaggcgtggaggacagacgaggagttcgcgcgggaggtgctcgccggcgtgaacccgatgatgatcacgcgtctcacggaattccctccgaaaagtagtctcgatcctagcaagttcggcgaccacaccagcatgatcacggcggcgcacatcgggagcaacctcgagggcctcaccgtgcagcaggcgctggacagcaaccggctgtacattctggaccaccacgaccggttcatgccgttcctgatcgacgtcaacggcctggagggcaacttcatctacgcgaccaggacgctcttcttcctgcgaggggacggcacgctggcgccgctcgccatcgagctgagcgagcctatgatccagggcgacgtcaccgccgccaagagcaccgtgtacacgccggcgtccaccggcgtcgaggcctgggtgtggcagctcgccaaggcctacgtcgccgtcaacgactccggctggcaccaactgatcagccactggctgaacacgcacgctgtgatggagccgttcgtgatcgcgacgaaccggcagctcagcgtgacgcacccggtgcacaagctgctgagcccgcactaccgcgacacgatgaccatcaacgccctggcgcggcagacgctcatcaacgccggcggcatcttcgagatgaccgtcttccccggcaagtacgcgctctggatgtcgtccatggtgtacaagaactggaacttcaccgagcagggcctccccgccgatctcatcaaaaggggagtggcggtggaggacgcgacgagcccgtacaaggtgcggctgctgatcaaggactacccgtacgcggcggacgggctggagatctggcacgcgatcgagcagtgggtgggcgagtacctggcgatctactacaccgacgacggcgtgctccgaggcgacgcggagctgcaggcgtggtgggcggaggtgcgggaggtcgggcacggcgacctcaagggcgcggcgtggtggcccaggatggacgccgtgtcggagctccgcgacgcgtgcaccaccatcatctggatcgcgtcggcgctgcacgcggcggtcaacttcggccagtacccgtacgccggttacctcccgaaccggccgacggtgagccggcggcggatgccggagcccgggacggaggcgtacggcgagctggggcgcgacccggagcgggccttcatccgcaccatcaccagccagctccagaccatcatcggcatctcgctgatcgaggtcctgtccaagcactcctccgacgaggtgtacctcgggcagcgcgacacgccggcgtggacgtcggacgccagggcgctggaggcgttccggcggttcagcgaccggctggtggagatcgaagggaaggtggtgggcatgaacggcgacgcggggctcaagaaccgcaatggcccagccgagttcccatacatgctgctttaccccaacacctccgacgtcaccggcgccgccgccggcatcaccgccaagggcatccccaacagcatctcgatctga</cdnaseq>|
| + | * Institute of Crop Science, The National Key Facility for Crop Gene Resources and Genetic Improvement, Chinese Academy |
| − | AA = <aaseq>MLGGIIDTITGSSKQSRLKGTVVLMRKNVLDLNDFGATVIDGLG EFLGKGVTCQLISSTAVDPNNGNRGKVGAEASLEQWLTSSLPSLTTGESRFGVTFDWD VDKLGVPGAIIVKNHHSNEFFLKTITLDDVPGRAGAVVFLANSWVYPADKYRYDRVFF ANDAYLPSQMPAALKPYRDDELRNLRGDDQQGPYEEHDRVYRYDVYNDLGSPDSGNPR PILGGSPDTPYPRRGRTGRKPTTTDPDSESRLSLVEQIYVPRDERFGHLKMADFLGYS IKAIAEGIVPAIRTYVDTTPGEFDSFQDILDLYEGGLKLPDVPALEELRKRFPLQLVK DLLPAAGDYILKLPMPQIIKQDKEAWRTDEEFAREVLAGVNPMMITRLTEFPPKSSLD PSKFGDHTSMITAAHIGSNLEGLTVQQALDSNRLYILDHHDRFMPFLIDVNGLEGNFI YATRTLFFLRGDGTLAPLAIELSEPMIQGDVTAAKSTVYTPASTGVEAWVWQLAKAYV AVNDSGWHQLISHWLNTHAVMEPFVIATNRQLSVTHPVHKLLSPHYRDTMTINALARQ TLINAGGIFEMTVFPGKYALWMSSMVYKNWNFTEQGLPADLIKRGVAVEDATSPYKVR LLIKDYPYAADGLEIWHAIEQWVGEYLAIYYTDDGVLRGDAELQAWWAEVREVGHGDL KGAAWWPRMDAVSELRDACTTIIWIASALHAAVNFGQYPYAGYLPNRPTVSRRRMPEP GTEAYGELGRDPERAFIRTITSQLQTIIGISLIEVLSKHSSDEVYLGQRDTPAWTSDA RALEAFRRFSDRLVEIEGKVVGMNGDAGLKNRNGPAEFPYMLLYPNTSDVTGAAAGIT AKGIPNSISI</aaseq>|
| + | of Agricultural Sciences, Beijing 10081, China |
| − | DNA = <dnaseqindica>1..190#589..887#1574..1811#2069..2404#2493..2578#2674..2781#2889..3196#3275..3538#3631..4402#atgctgggagggatcatcgacaccatcacggggtcgtcgaagcagtcgcggctcaagggcacggtggtgctcatgcgcaagaacgtcctcgacctcaacgacttcggcgccaccgtcatcgacggcctcggcgagttcctcggcaagggcgtcacctgccagctcatcagctccaccgccgtcgacccaagtgagcacaccccccccccccctctcacccccttgcatctcttctcttggtcgatttacctctcttgttcatttttgtccatacaaacttaaacactgtatgggcggccattgcctagctagctcggtcctcttttgatgggacatggaaagaagagaccaacgtcgaggaaaaagacaaccagggcaggagtaccagatgctaacccaaagtacaaaagctaaaaagtaaaaaaaaaaagaagaagtagtacctcactttgaactagatgcctgaaactatagctggtgtcgcgaggtggtgacacgtagtataattaacagctggggcatgattagtcgttggtttggactaattaacgggaacggattgggcatgatcctctcatcggcgtgcagacaacggcaaccgggggaaggtgggggcggaggcgagcctggagcagtggctgacgagcagcctgccgtcgctgacgacgggggagtcgcggttcggcgtgacgttcgactgggacgtcgacaagctcggcgtgccgggggccatcatcgtcaagaaccaccacagcaacgagttcttcctcaagaccatcaccctcgacgacgtccccggccgcgccggcgccgtcgtcttcctcgccaactcctgggtctaccccgccgacaagtaccgttacgaccgcgtcttcttcgccaacgatgtgagttcttctctgctgcatactgtattatgctaccctgcatgtaaattacactattacagtaaccatttgccgttcttctttgtttggccagttcgtagatgctttatgtagtaagttgcttgattcacgtcgtttggtaggcgtccatagggaagatatttggttaggtgagaagtgaatggactttatgtaagttgtttatgtggtaggtgaagtggatttagtagcactgttcaaaaaaaagaagcagctctacaatggatatgcttcctgatgataacaacataaaagtggctatagtactagaaatctggaatagtccttggactcaggaaggcatgtgagttcacgtgagtcatcaactcatcatagttgccacagttcacagttcacacccatttagacggcattgtttcatggccccgagaagctttttcaacaagatcaacgacacagcactcgattttactttgcgaacacatgacacggtaaaagttttaaagtgaacagatagttgcctgcctcttgttcagcgtgcagccaggtgtccaaggccggtgccgtatcaagggactgatttgggcaatcaactaaccaattaagtaggagtaattagcgatgcgtattaatacgagtacgtgctataattaactttgtgatatattttctgcggcgacgcgcaggcctacctgccgagccagatgccggcggcgctgaagccgtaccgcgacgacgagctccgcaacctgcgcggcgacgaccagcagggcccctacgaggagcacgaccgcgtctaccgctacgatgtctacaacgacctcggctcccccgactccggcaaccctcgccccatcctcggcggctcccccgacaccccctaccctcgccgcggccgcaccggccgcaaacccaccaccaccggtacgcatcccccaaccaaaaattttacgattcttaaaaaaacattttaaggtctaaaaagttttttatacatttttacactagaatgtggcaccttcactcacatacctcccagttaggcccacctgtcatagtgaaacaccagaactggtccatgttcagctgcaatgtctcactgacggtgggcccggtttgtgtggttgaccgttgactttgactttgactgatgttttttgtacacgtatgcgtgcgtgcagatccggactcggagagtaggctgtcgctggtggagcagatctacgtgccgcgggacgagcggttcgggcacctgaagatggcggacttcctgggctactcgatcaaggcgatcgcggaggggatcgtgccggcgatccgcacgtacgtggacaccacccccggcgagttcgactcgttccaggacatcctcgacctgtacgagggtggcctcaagctccccgatgtccccgcgctggaggagctccgcaagcgattcccgctccagctcgtcaaggacctcctccctgccgccggcgactatatcctcaagctccccatgcctcagattatcaaacgtgagcgcaacctgtcatcgtagagacttttcatcagaatctttaggtgaaaactgacgatcgatgtaatgtttggctatgtatgcagaggacaaggaggcgtggaggacagacgaggagttcgcgcgggaggtgctcgccggcgtgaacccgatgatgatcacgcgtctcacggtgagtgatcagtgatgcgttcatgccaaattgatagtgaacacggctgctgcaacgtgaaatgtggcaaatttaactcgatgttgatcccgcaggaattccctccgaaaagtagtctcgatcctagcaagttcggcgaccacaccagcatgatcacggcggcgcacatcgggagcaacctcgagggcctcaccgtgcagcaggttggtttcgtacgtgcagattttgctatcaatcgtgacttgcaaacctgaattgttgctggcaaatggcaatagtgtgtggaaatttactgtgtcgcgatttgcaggcgctggacagcaaccggctgtacattctggaccaccacgaccggttcatgccgttcctgatcgacgtcaacggcctggagggcaacttcatctacgcgaccaggacgctcttcttcctgcgaggggacggcacgctggcgccgctcgccatcgagctgagcgagcctatgatccagggcgacgtcaccgccgccaagagcaccgtgtacacgccggcgtccaccggcgtcgaggcctgggtgtggcagctcgccaaggcctacgtcgccgtcaacgactccggctggcaccaactgatcagccactggtacgttcaaaaccagagcaatcgatcgcttcatcgacggagatttgtactcatcggttgttgttgttggttgatcaggctgaacacgcacgctgtgatggagccgttcgtgatcgcgacgaaccggcagctcagcgtgacgcacccggtgcacaagctgctgagcccgcactaccgcgacacgatgaccatcaacgccctggcgcggcagacgctcatcaacgccggcggcatcttcgagatgaccgtcttccccggcaagtacgcgctctggatgtcgtccatggtgtacaagaactggaacttcaccgagcagggcctccccgccgatctcatcaaaaggtagtagtattacacatctccattgatttttgtaaggcatcagtgggaagaatgtacaatttagtgcaaaatcgtgtgaattttttttgcaggggagtggcggtggaggacgcgacgagcccgtacaaggtgcggctgctgatcaaggactacccgtacgcggcggacgggctggagatctggcacgcgatcgagcagtgggtgggcgagtacctggcgatctactacaccgacgacggcgtgctccgaggcgacgcggagctgcaggcgtggtgggcggaggtgcgggaggtcgggcacggcgacctcaagggcgcggcgtggtggcccaggatggacgccgtgtcggagctccgcgacgcgtgcaccaccatcatctggatcgcgtcggcgctgcacgcggcggtcaacttcggccagtacccgtacgccggttacctcccgaaccggccgacggtgagccggcggcggatgccggagcccgggacggaggcgtacggcgagctggggcgcgacccggagcgggccttcatccgcaccatcaccagccagctccagaccatcatcggcatctcgctgatcgaggtcctgtccaagcactcctccgacgaggtgtacctcgggcagcgcgacacgccggcgtggacgtcggacgccagggcgctggaggcgttccggcggttcagcgaccggctggtggagatcgaagggaaggtggtgggcatgaacggcgacgcggggctcaagaaccgcaatggcccagccgagttcccatacatgctgctttaccccaacacctccgacgtcaccggcgccgccgccggcatcaccgccaagggcatccccaacagcatctcgatctga</dnaseqindica>|
| + | ==References== |
| − | Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001057528.1 RefSeq:Os03g0700400]|
| + | <references> |
| − | }}
| + | * <ref name="ref1"> |
| − | [[Category:Genes]] | + | Long, Qizhang, et al. "Molecular genetic characterization of rice seed lipoxygenase 3 and assessment of its effects on seed longevity." Journal of Plant Biology 56.4 (2013): 232-242. |
| − | [[Category:Japonica mRNA]]
| + | </ref> |
| − | [[Category:Oryza Sativa Japonica Group]] | + | </references> |
| − | [[Category:Japonica Genes]] | + | |
| − | [[Category:Japonica Chromosome 3]]
| + | |
| − | [[Category:Chromosome 3]]
| + | ==Structured Information== |
| | + | [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 3]] |
