Difference between revisions of "Os06g0225000"

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(Created page with "{{JaponicaGene| GeneName = Os06g0225000| Description = Similar to NTGB3 (Fragment)| Version = NM_001063728.1 GI:115467187 GeneID:4340541| Length = 3868 bp| Definition = O...")
 
 
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{{JaponicaGene|
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The rice '''''Os06g0225000''''' was reported as '''''OsSar1d''''' in 2013 <ref name="ref1" /> by researchers from China and Japan.  
GeneName = Os06g0225000|
 
Description = Similar to NTGB3 (Fragment)|
 
Version = NM_001063728.1 GI:115467187 GeneID:4340541|
 
Length = 3868 bp|
 
Definition = Oryza sativa Japonica Group Os06g0225000, complete gene.|
 
Source = Oryza sativa Japonica Group
 
  
  ORGANISM  Oryza sativa Japonica Group
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==Annotated Information==
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
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[[File:140-Os01g0338000.png|right|thumb|327px|'''Figure 2.''' ''Subcellular localization of Sar1 in rice protoplasts.<ref name="ref1" />.'']]
            Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
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===Function===
            clade; Ehrhartoideae; Oryzeae; Oryza.
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* '''''Sar1''''', a small GTPase, acts as a molecular switch to regulate the assembly of coat protein complex II, which exports secretory protein from the ER to the Golgi apparatus.
|
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* There are four putative Sar1 genes ('''''OsSar1a, OsSar1b, OsSar1c, OsSar1d''''') in rice.
Chromosome = [[:category:Japonica Chromosome 6|Chromosome 6]]|
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* '''''OsSar1a/b/c''''' play a crucial role in storage proteins exiting from the ER, with functional redundancy in rice endosperm, and glutelin and α-globulin transported together from the ER to the Golgi apparatus by a pathway mediated by coat protein complex II.
AP = Chromosome 6:6474162..6478029|
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CDS = 6474211..6474342,6474745..6474876,6477640..6477960|
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GCID = <gbrowseImage1>
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===Subcellular localization===
name=NC_008399:6474162..6478029
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* '''''OsSar1''''' was fused with mCherry (OsSar1–mCherry) and co-expressed with yellow fluorescent protein (YFP)–AtSec24, which labels ERES 2009), in rice protoplast cells. The punctate structures labelled with OsSar1–mCherry coincided with YFP–AtSec24 fluorescence (Fig. 2B), and the distribution pattern of the four Sar1 proteins was similar.  
source=RiceChromosome06
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* These data indicated that the '''''OsSar1''''' isoforms were distributed at ERES, at the ER, and in the cytosol.
preset=GeneLocation
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</gbrowseImage1>|
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You can also add sub-section(s) at will.
GSID = <gbrowseImage2>
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name=NC_008399:6474162..6478029
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==Labs working on this gene==
source=RiceChromosome06
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* Key Laboratory of Plant Molecular Physiology, Institute of Botany, the Chinese Academy of Sciences, Beijing 100093, China
preset=GeneLocation
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* Faculty of Agriculture, Kyushu University, Fukuoka 812–8581, Japan
</gbrowseImage2>|
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==References==
CDNA = <cdnaseq>atgtcgtttctgctggattggttctacgacgtgctggcgtcgatcgggctgtggcagaaggaggccaagatcctcttcctcggcctcgacaacgccggcaaaaccaccctcttctacatgctctcacaagagaatctggcggtgcaccagccgacgcagcacccgacgtcggaggagctgagcatcgggcggatcaggttcaaggcgttcgacctcggcggccaccggatcgctcgccgcgtctggagggactactacgcccaggttgatgcagtagtttacgtggtggacgctgccgacaggtgccggttcgccgagtcgaagatggagctggacgccctcctgtctgacgacgcgctcgctggcgtgccgttcctcgtcctcgggaacaagatagacatcccgtacgcggtgcccgagcaggagctgtgctactacctcgggctcaccggcctcaccaccggcaagggcaatgtcaaccttgcaggaaccggagtgcggccggtcgaggtcttcatgtgcagcgtcgtccgccggatgggctacggcgatggcttcaggtggatgtcacagtacatcaagtag</cdnaseq>|
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<references>
AA = <aaseq>MSFLLDWFYDVLASIGLWQKEAKILFLGLDNAGKTTLFYMLSQE                    NLAVHQPTQHPTSEELSIGRIRFKAFDLGGHRIARRVWRDYYAQVDAVVYVVDAADRC                    RFAESKMELDALLSDDALAGVPFLVLGNKIDIPYAVPEQELCYYLGLTGLTTGKGNVN                    LAGTGVRPVEVFMCSVVRRMGYGDGFRWMSQYIK</aaseq>|
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* <ref name="ref1">
DNA = <dnaseqindica>50..181#584..715#3479..3799#atcaaatcaacaacaggaagaagagaagaagaacataacatacctggagatgtcgtttctgctggattggttctacgacgtgctggcgtcgatcgggctgtggcagaaggaggccaagatcctcttcctcggcctcgacaacgccggcaaaaccaccctcttctacatgctctcacaagaggtataggctcccatcggatggcctaatcaaccgaagaaaatgccaaattttaaatttttaaacttaattttgagattgattttaagatattttcaacgtagtttttttttcagcattggcttttaagtcaccatgaacacatatataaaaattttacctacaaatctatttttattatctaataagccgttttagcttattaagaaaaaagccaaacgatagggcctatatagatcgatcgctcgctgcacatatgtttgatttgcaaaggccacatatgtttgatttgcaaaggctgatggtgatgatatcaaaagctactcctagattcatatatgcctgtgctcatgagtgttcattgtgtggtgatggctggttgggctgtgttgtgtttgtgtgcagaatctggcggtgcaccagccgacgcagcacccgacgtcggaggagctgagcatcgggcggatcaggttcaaggcgttcgacctcggcggccaccggatcgctcgccgcgtctggagggactactacgcccaggttggtttttttgctttctttgctcccctcctagtcctagtcaccgaaatcgctaattagctgcacgcggttcagtttccgggcccatacatttatctattttttacaattttttaatgcatatatgcacaaagtttatatgtacatatataaacttttttatatatacatataaagttatagattttttatatgttcaaagtatatacatactagaaaaaatgcatgtgcgttgcaacggctgaagattattttaatcttattattgttatacggtttagttaaggtgaaattcactgtgtgaattcgtttggatctatatttttctagaaaatcataagctgcaattagaaatttgatcatctcaaattagcatgcgagtttttttaaaaagatttcttatatgactctttctgtatttctaaaagtgaactagcttaaaacccgactcaaatacggatatgcatttccaaaagcgaacgaacttaaaaaccgactcatacacggatgacgtatcaaaataccggcaaaaacatcttcaatttttataatagtagaattagagacataaattttctatatactagcataatgcccatactttgtaacgggattaaaaagagaatcatatggtattacatattcacatggggaaacttaacatggctatatcattatgtgaaaaaaatttggaaaaaaaacccctcaaatttatcctcaaatcaaatcctacatttcaaattttgatgtagttactatttctctctagttgaaataaaagcttctcttagggcctctttgtttaggcttaggcttattggtttagatttttaagtcagcttattggcttatatgatttataagccagtggatttaatgtcttaagtttagtggtggagtcatacatctaccttatataagctgaaaaagcttctccaacctagcttttggcttaatagtgttagagtggcttatggcttaaaaaagccaaacaaaaaactgcttgtttatttaggcttagactttttggcttataagttggcttataagcctaaacaaagagggcctagtactctcttcttcttttaaagagtacaaatagcagggtttaccttaccgccggggccggggttaccgcaccccggcggcaagcacggttaccgcgcggtaaccgcggtaaccgtgaaaaaccgtacaaaaccgtgcaaaatttatcaaaaaatcaaattattttttaaatttatttgtatttaaggaggttaccgcggtatttatattaccgtacccccgcggtaagcccggtaaccgcggtaacccgcggtaaggtaaaccctgacaaatagggacttacatgtaattgataggggtggtggtggcagaaaatctgccactaccattgcttccttttaagtggtatagatacatctacaaagttagtttatacatatgtataacatattcgggaccgaaaaaaggggcggaggtgggctgggaccgcaaccgtgtgtcgtcaaccgcccattagccacatgaccaaagattcaacgtatctctaaataaattaatttgtgtatatataaataatatttttaaattttaaacttattcttaatggtatttgtaccaaaaaaatattgtataagttatctttatatagctaaacttttataaataataccatggtacttgataaataataatctttatctaacccaaagttatctaaatttaataaattaagcacctctattatatttattatttggtaaattaataacaaatagaatacttatactgatggacttaaggtatacataaaaaagacgtaaatattagggaaggacctaatatcaaataaatagaaggggtaaggcttcgaaccctagtcgtctaacccaccaccttgtgaagatattcataagatccctgggtgtttctcaaaaggtatacataggatataatcactccttttttcttaagcggggcctcaccgtggcctttgggcatcgccttcttcggacatcgacttgacggggattcatcgtcaagagatgggtgcaccacatgagtgaccagcgaagtatcccctcccggtggcagcgattgtgtgagccccctggcgactggaggaagcttacttttaatatttggcgccgataataaccttggtggaatctgaacaaaaaaaaagaataataatgtaggttagtactagtaccttattaagggatgacagattgacagtcatatatattagtgcataacccaactctgcatattgttacaacaaaacaaagaaaaaactgatagtggtatcaattgcgggaggaactgtaccatgtttctttagtcgtacagccagcatgtgtatattcatgactgaccaacaagtttttcttctttttttttctaaggcgggcaaaaggtttgccttttatactgatagagtaggagaaaatggactatttacaggactgaccaacaagtttatttcctttgaaactcataatgaacagggattgagttgggcgcttgcctgagaattcatgctagtatgaacacagcttcccaatcagccagtacacagtaatcacagtggtggcgccagctcatgcatactttgtcaattgtcacatgctgttgcatatcttgtcaatagccaaataccacctgtttttccagcatttgtagctacttccctcttcaaagtctgaagtgagccacttttgctgcttcttcataagcttcatgtctgcttgacaggttgatgcagtagtttacgtggtggacgctgccgacaggtgccggttcgccgagtcgaagatggagctggacgccctcctgtctgacgacgcgctcgctggcgtgccgttcctcgtcctcgggaacaagatagacatcccgtacgcggtgcccgagcaggagctgtgctactacctcgggctcaccggcctcaccaccggcaagggcaatgtcaaccttgcaggaaccggagtgcggccggtcgaggtcttcatgtgcagcgtcgtccgccggatgggctacggcgatggcttcaggtggatgtcacagtacatcaagtagaacatggtagagactcagagcatgtatctatatgcctcttgtatcaattaatcaagacatttcatatga</dnaseqindica>|
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Tian L, Dai LL, Yin ZJ, Fukuda M, Kumamaru T, Dong XB, Xu XP, Qu le Q. Small
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001063728.1 RefSeq:Os06g0225000]|
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GTPase Sar1 is crucial for proglutelin and α-globulin export from the endoplasmic
}}
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reticulum in rice endosperm. J Exp Bot. 2013 Jul;64(10):2831-45. doi:
[[Category:Genes]]
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10.1093/jxb/ert128. Epub 2013 May 16. PubMed PMID: 23682119; PubMed Central
[[Category:Japonica mRNA]]
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PMCID: PMC3697955.
[[Category:Oryza Sativa Japonica Group]]
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</ref>
[[Category:Japonica Genes]]
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</references>
[[Category:Japonica Chromosome 6]]
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[[Category:Chromosome 6]]
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 +
==Structured Information==
 +
    [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 6]]

Latest revision as of 11:43, 20 October 2016

The rice Os06g0225000 was reported as OsSar1d in 2013 [1] by researchers from China and Japan.

Annotated Information

Figure 2. Subcellular localization of Sar1 in rice protoplasts.[1].

Function

  • Sar1, a small GTPase, acts as a molecular switch to regulate the assembly of coat protein complex II, which exports secretory protein from the ER to the Golgi apparatus.
  • There are four putative Sar1 genes (OsSar1a, OsSar1b, OsSar1c, OsSar1d) in rice.
  • OsSar1a/b/c play a crucial role in storage proteins exiting from the ER, with functional redundancy in rice endosperm, and glutelin and α-globulin transported together from the ER to the Golgi apparatus by a pathway mediated by coat protein complex II.


Subcellular localization

  • OsSar1 was fused with mCherry (OsSar1–mCherry) and co-expressed with yellow fluorescent protein (YFP)–AtSec24, which labels ERES 2009), in rice protoplast cells. The punctate structures labelled with OsSar1–mCherry coincided with YFP–AtSec24 fluorescence (Fig. 2B), and the distribution pattern of the four Sar1 proteins was similar.
  • These data indicated that the OsSar1 isoforms were distributed at ERES, at the ER, and in the cytosol.

You can also add sub-section(s) at will.

Labs working on this gene

  • Key Laboratory of Plant Molecular Physiology, Institute of Botany, the Chinese Academy of Sciences, Beijing 100093, China
  • Faculty of Agriculture, Kyushu University, Fukuoka 812–8581, Japan

References

  1. 1.0 1.1 Tian L, Dai LL, Yin ZJ, Fukuda M, Kumamaru T, Dong XB, Xu XP, Qu le Q. Small GTPase Sar1 is crucial for proglutelin and α-globulin export from the endoplasmic reticulum in rice endosperm. J Exp Bot. 2013 Jul;64(10):2831-45. doi: 10.1093/jxb/ert128. Epub 2013 May 16. PubMed PMID: 23682119; PubMed Central PMCID: PMC3697955.


Structured Information