Difference between revisions of "Os04g0649100"

From RiceWiki
Jump to: navigation, search
 
(9 intermediate revisions by 3 users not shown)
Line 1: Line 1:
Please input one-sentence summary here.
+
The rice '''''Os04g0649100''''' was reported as '''''SHAT1''''' in 2012 <ref name="ref1" /> by researchers from China and Japan.  
  
 
==Annotated Information==
 
==Annotated Information==
===Function===
+
===Gene Symbol===
Please input function information here.
+
*'''''Os04g0459000''''' '''''<=>''''' '''''shat1,SHAT1,OsSHAT1'''''
  
 +
* '''''OsSHAT1''''' gene  encodes an APETALA2 transcription factor.
 +
* '''''OsSHAT1''''' is required for seed shattering through specifyingabscission zone (AZ) development in rice.
 
===Expression===
 
===Expression===
Please input expression information here.
+
* Genetic analyses revealed that the expression of '''''SHAT1''''' in AZ (Abscission Zone) was positively regulated by the trihelix transcription factor SH4. You can also add sub-section(s) at will.
 
 
===Evolution===
 
Please input evolution information here.
 
 
 
You can also add sub-section(s) at will.
 
  
 
==Labs working on this gene==
 
==Labs working on this gene==
Please input related labs here.
+
* National Center for Gene Research, National Center for Plant Gene Research (Shanghai) and Institute of Plant Physiology and
 +
Ecology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai 200233, China
 +
* Plant Genome Center, Tsukuba, Ibaraki 305-0856, Japan
 +
* State Key Laboratory of Systematic and Evolutionary Botany, Key Laboratory of Plant Resources, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China
 +
* Zhejiang Academy of Agricultural Sciences, Hangzhou 310021, China
 +
* Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing 100029, China
  
 
==References==
 
==References==
Please input cited references here.
+
<references>
 +
* <ref name="ref1">
 +
Zhou Y, Lu D, Li C, Luo J, Zhu BF, Zhu J, Shangguan Y, Wang Z, Sang T, Zhou B,
 +
Han B. Genetic control of seed shattering in rice by the APETALA2 transcription
 +
factor shattering abortion1. Plant Cell. 2012 Mar;24(3):1034-48. doi:
 +
10.1105/tpc.111.094383. Epub 2012 Mar 9. PubMed PMID: 22408071; PubMed Central
 +
PMCID: PMC3336138.
 +
</ref>
 +
</references>
  
 
==Structured Information==
 
==Structured Information==
{{JaponicaGene|
 
GeneName = Os04g0649100|
 
Description = Pathogenesis-related transcriptional factor and ERF domain containing protein|
 
Version = NM_001187194.1 GI:297723518 GeneID:9269072|
 
Length = 2030 bp|
 
Definition = Oryza sativa Japonica Group Os04g0649100, complete gene.|
 
Source = Oryza sativa Japonica Group
 
  
  ORGANISM  Oryza sativa Japonica Group
 
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
 
            Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
 
            clade; Ehrhartoideae; Oryzeae; Oryza.
 
|
 
Chromosome = [[:category:Japonica Chromosome 4|Chromosome 4]]|
 
AP = Chromosome 4:33471877..33473906|
 
CDS = 33471878..33472020,33472167..33472296|
 
GCID = <gbrowseImage1>
 
name=NC_008397:33471877..33473906
 
source=RiceChromosome04
 
preset=GeneLocation
 
</gbrowseImage1>|
 
GSID = <gbrowseImage2>
 
name=NC_008397:33471877..33473906
 
source=RiceChromosome04
 
preset=GeneLocation
 
</gbrowseImage2>|
 
CDNA = <cdnaseq>tatgtcctaatcgatcaccgtttcttcctctttcgttcgatcgttcgttcttgggcaatctcccgtaaatcatcttgtgggtttttggtgcactgcaggtacgtctacttggggctgttcgacaccgaggaggaagctgccagggcgtacgaccgcgctgccatcaagtgcaatggcaaggatgcggtgacgaacttcgatccaagcatttacgccggggagttcgagccgccgggtgggtgtgtcatgtgtgcgcttactgctcatggctag</cdnaseq>|
 
AA = <aaseq>YVLIDHRFFLFRSIVRSWAISRKSSCGFLVHCRYVYLGLFDTEE                    EAARAYDRAAIKCNGKDAVTNFDPSIYAGEFEPPGGCVMCALTAHG</aaseq>|
 
DNA = <dnaseqindica>2..144#291..420#gtatgtcctaatcgatcaccgtttcttcctctttcgttcgatcgttcgttcttgggcaatctcccgtaaatcatcttgtgggtttttggtgcactgcaggtacgtctacttggggctgttcgacaccgaggaggaagctgccaggtaaaattattgggccgcactgtgcgcgcgcgcggccattgttgttgaatgtcgagtgtggctgctgcgccgtttgcgagtttacgcttctgggttagatgggcgagcggtgatggtgattgatgtttcttgtctcttggccacagggcgtacgaccgcgctgccatcaagtgcaatggcaaggatgcggtgacgaacttcgatccaagcatttacgccggggagttcgagccgccgggtgggtgtgtcatgtgtgcgcttactgctcatggctaggctgttcgtttgtgagttgtgactgctcatccggacaaaatctgtcactgttttgcagcagcggccacgggtgatgccgccgagcacaacctggacctctcgcttgggagctcggcgggctccaagaggggcaacgttgacggtggcggggacgacgagatcaccggcggcggtggcggtggcgcgggctccgaccagcgcgtccctatggcgttcgaccttgactggcaaacggcggcggcgaggagcaccaaagctaaggtaaaaaaagaatggggactttgctttccgcatcagccgattgtcttctcatcacgtaataaaaaggcttaaaaattcctcgttttcttgtctagttcgaccagaactcgaaccatccccagatgcctccggtcctgcaggtcacccacctgccattcagtcccaggcatcatcaccaagtgggtagctcactatacaactccactccacttcgctccatttgctgctgaatttctcgcgtttggtttcaccggtatccgtgagctgatgaattcttgatgtctgtgctgctagttcttgagcaatggtgatccggggacagcgggaggcctgtcactgacgatcggcgcaggcatggccgggcactggcctccccagcagcagcaggggtggggcaacgccggcggcatgagctggccgcacccgccgcacccgccgccgccgccgaccaacgccgcggccgccgcaaccgctacagcagctgcagcatcatcacgattccctccctacattgcgacgcaagcctcaacctggctgcagaagaacgggttccattccctgacccggcccacctaagatgatcaaagatttaaaattcaagatcgctgcattcatcgtctcctcgtcgatcgatcatggcaaagatcgatggagagagagaggtgtgtgtcactgacgcagggaaaaactcaatgcagatttaccagcaagaacaagagctggatgctattcttttgctctaccttttttcttctctctttcttcttctctgtttcttgattgggcgagcgagatggagatggatctgatcatgaatgggacacaagtgggcatgtaaatgaggagctccctagaaggcgagagagattggccaagcgtcgcctcaagcagtgtaggagtatctatcttttgccgtttcgctcgctttctttccttcttttctttcaccatggccaacaacgatgactctgggtgtcaacatcacagctcattttgttcggtctcatgttgcatcattcactgcatgatgaccatgattcgggaaaatttgctccatgcacctccgcttggccgacaacacttgccctctagtaagcatccttaaacacccacggtttctactactattcatcgctttataaatcctacggagtgctagctttacgctactactactgtcatgtaatctatcatcatcaaaagagacgatcagattaacatatatgtcaactatttaagctttggctctttgctttccaagaaacgtaactgccgagatgtggagcatatagaagtattcgtccttctagatgttggtactaaagtaatgttctttcttttctccctct</dnaseqindica>|
 
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001187194.1 RefSeq:Os04g0649100]|
 
}}
 
 
[[Category:Genes]]
 
[[Category:Genes]]
 
[[Category:Japonica mRNA]]
 
[[Category:Japonica mRNA]]

Latest revision as of 03:11, 22 October 2016

The rice Os04g0649100 was reported as SHAT1 in 2012 [1] by researchers from China and Japan.

Annotated Information

Gene Symbol

  • Os04g0459000 <=> shat1,SHAT1,OsSHAT1
  • OsSHAT1 gene encodes an APETALA2 transcription factor.
  • OsSHAT1 is required for seed shattering through specifyingabscission zone (AZ) development in rice.

Expression

  • Genetic analyses revealed that the expression of SHAT1 in AZ (Abscission Zone) was positively regulated by the trihelix transcription factor SH4. You can also add sub-section(s) at will.

Labs working on this gene

  • National Center for Gene Research, National Center for Plant Gene Research (Shanghai) and Institute of Plant Physiology and

Ecology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai 200233, China

  • Plant Genome Center, Tsukuba, Ibaraki 305-0856, Japan
  • State Key Laboratory of Systematic and Evolutionary Botany, Key Laboratory of Plant Resources, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China
  • Zhejiang Academy of Agricultural Sciences, Hangzhou 310021, China
  • Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing 100029, China

References

  1. Zhou Y, Lu D, Li C, Luo J, Zhu BF, Zhu J, Shangguan Y, Wang Z, Sang T, Zhou B, Han B. Genetic control of seed shattering in rice by the APETALA2 transcription factor shattering abortion1. Plant Cell. 2012 Mar;24(3):1034-48. doi: 10.1105/tpc.111.094383. Epub 2012 Mar 9. PubMed PMID: 22408071; PubMed Central PMCID: PMC3336138.

Structured Information