Difference between revisions of "Os04g0649100"

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(Created page with "{{JaponicaGene| GeneName = Os04g0649100| Description = Pathogenesis-related transcriptional factor and ERF domain containing protein| Version = NM_001187194.1 GI:297723518 ...")
 
 
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{{JaponicaGene|
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The rice '''''Os04g0649100''''' was reported as '''''SHAT1''''' in 2012 <ref name="ref1" /> by researchers from China and Japan.
GeneName = Os04g0649100|
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Description = Pathogenesis-related transcriptional factor and ERF domain containing protein|
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==Annotated Information==
Version = NM_001187194.1 GI:297723518 GeneID:9269072|
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===Gene Symbol===
Length = 2030 bp|
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*'''''Os04g0459000''''' '''''<=>''''' '''''shat1,SHAT1,OsSHAT1'''''
Definition = Oryza sativa Japonica Group Os04g0649100, complete gene.|
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Source = Oryza sativa Japonica Group
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* '''''OsSHAT1''''' gene  encodes an APETALA2 transcription factor.
 +
* '''''OsSHAT1''''' is required for seed shattering through specifyingabscission zone (AZ) development in rice.
 +
===Expression===
 +
* Genetic analyses revealed that the expression of '''''SHAT1''''' in AZ (Abscission Zone) was positively regulated by the trihelix transcription factor SH4. You can also add sub-section(s) at will.
 +
 
 +
==Labs working on this gene==
 +
* National Center for Gene Research, National Center for Plant Gene Research (Shanghai) and Institute of Plant Physiology and
 +
Ecology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai 200233, China
 +
* Plant Genome Center, Tsukuba, Ibaraki 305-0856, Japan
 +
* State Key Laboratory of Systematic and Evolutionary Botany, Key Laboratory of Plant Resources, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China
 +
* Zhejiang Academy of Agricultural Sciences, Hangzhou 310021, China
 +
* Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing 100029, China
 +
 
 +
==References==
 +
<references>
 +
* <ref name="ref1">
 +
Zhou Y, Lu D, Li C, Luo J, Zhu BF, Zhu J, Shangguan Y, Wang Z, Sang T, Zhou B,
 +
Han B. Genetic control of seed shattering in rice by the APETALA2 transcription
 +
factor shattering abortion1. Plant Cell. 2012 Mar;24(3):1034-48. doi:
 +
10.1105/tpc.111.094383. Epub 2012 Mar 9. PubMed PMID: 22408071; PubMed Central
 +
PMCID: PMC3336138.
 +
</ref>
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</references>
 +
 
 +
==Structured Information==
  
  ORGANISM  Oryza sativa Japonica Group
 
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
 
            Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
 
            clade; Ehrhartoideae; Oryzeae; Oryza.
 
|
 
Chromosome = [[:category:Japonica Chromosome 4|Chromosome 4]]|
 
AP = Chromosome 4:33471877..33473906|
 
CDS = 33471878..33472020,33472167..33472296|
 
GCID = <gbrowseImage1>
 
name=NC_008397:33471877..33473906
 
source=RiceChromosome04
 
preset=GeneLocation
 
</gbrowseImage1>|
 
GSID = <gbrowseImage2>
 
name=NC_008397:33471877..33473906
 
source=RiceChromosome04
 
preset=GeneLocation
 
</gbrowseImage2>|
 
CDNA = <cdnaseq>tatgtcctaatcgatcaccgtttcttcctctttcgttcgatcgttcgttcttgggcaatctcccgtaaatcatcttgtgggtttttggtgcactgcaggtacgtctacttggggctgttcgacaccgaggaggaagctgccagggcgtacgaccgcgctgccatcaagtgcaatggcaaggatgcggtgacgaacttcgatccaagcatttacgccggggagttcgagccgccgggtgggtgtgtcatgtgtgcgcttactgctcatggctag</cdnaseq>|
 
AA = <aaseq>YVLIDHRFFLFRSIVRSWAISRKSSCGFLVHCRYVYLGLFDTEE                    EAARAYDRAAIKCNGKDAVTNFDPSIYAGEFEPPGGCVMCALTAHG</aaseq>|
 
DNA = <dnaseqindica>2..144#291..420#gtatgtcctaatcgatcaccgtttcttcctctttcgttcgatcgttcgttcttgggcaatctcccgtaaatcatcttgtgggtttttggtgcactgcaggtacgtctacttggggctgttcgacaccgaggaggaagctgccaggtaaaattattgggccgcactgtgcgcgcgcgcggccattgttgttgaatgtcgagtgtggctgctgcgccgtttgcgagtttacgcttctgggttagatgggcgagcggtgatggtgattgatgtttcttgtctcttggccacagggcgtacgaccgcgctgccatcaagtgcaatggcaaggatgcggtgacgaacttcgatccaagcatttacgccggggagttcgagccgccgggtgggtgtgtcatgtgtgcgcttactgctcatggctaggctgttcgtttgtgagttgtgactgctcatccggacaaaatctgtcactgttttgcagcagcggccacgggtgatgccgccgagcacaacctggacctctcgcttgggagctcggcgggctccaagaggggcaacgttgacggtggcggggacgacgagatcaccggcggcggtggcggtggcgcgggctccgaccagcgcgtccctatggcgttcgaccttgactggcaaacggcggcggcgaggagcaccaaagctaaggtaaaaaaagaatggggactttgctttccgcatcagccgattgtcttctcatcacgtaataaaaaggcttaaaaattcctcgttttcttgtctagttcgaccagaactcgaaccatccccagatgcctccggtcctgcaggtcacccacctgccattcagtcccaggcatcatcaccaagtgggtagctcactatacaactccactccacttcgctccatttgctgctgaatttctcgcgtttggtttcaccggtatccgtgagctgatgaattcttgatgtctgtgctgctagttcttgagcaatggtgatccggggacagcgggaggcctgtcactgacgatcggcgcaggcatggccgggcactggcctccccagcagcagcaggggtggggcaacgccggcggcatgagctggccgcacccgccgcacccgccgccgccgccgaccaacgccgcggccgccgcaaccgctacagcagctgcagcatcatcacgattccctccctacattgcgacgcaagcctcaacctggctgcagaagaacgggttccattccctgacccggcccacctaagatgatcaaagatttaaaattcaagatcgctgcattcatcgtctcctcgtcgatcgatcatggcaaagatcgatggagagagagaggtgtgtgtcactgacgcagggaaaaactcaatgcagatttaccagcaagaacaagagctggatgctattcttttgctctaccttttttcttctctctttcttcttctctgtttcttgattgggcgagcgagatggagatggatctgatcatgaatgggacacaagtgggcatgtaaatgaggagctccctagaaggcgagagagattggccaagcgtcgcctcaagcagtgtaggagtatctatcttttgccgtttcgctcgctttctttccttcttttctttcaccatggccaacaacgatgactctgggtgtcaacatcacagctcattttgttcggtctcatgttgcatcattcactgcatgatgaccatgattcgggaaaatttgctccatgcacctccgcttggccgacaacacttgccctctagtaagcatccttaaacacccacggtttctactactattcatcgctttataaatcctacggagtgctagctttacgctactactactgtcatgtaatctatcatcatcaaaagagacgatcagattaacatatatgtcaactatttaagctttggctctttgctttccaagaaacgtaactgccgagatgtggagcatatagaagtattcgtccttctagatgttggtactaaagtaatgttctttcttttctccctct</dnaseqindica>|
 
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001187194.1 RefSeq:Os04g0649100]|
 
}}
 
 
[[Category:Genes]]
 
[[Category:Genes]]
 
[[Category:Japonica mRNA]]
 
[[Category:Japonica mRNA]]

Latest revision as of 03:11, 22 October 2016

The rice Os04g0649100 was reported as SHAT1 in 2012 [1] by researchers from China and Japan.

Annotated Information

Gene Symbol

  • Os04g0459000 <=> shat1,SHAT1,OsSHAT1
  • OsSHAT1 gene encodes an APETALA2 transcription factor.
  • OsSHAT1 is required for seed shattering through specifyingabscission zone (AZ) development in rice.

Expression

  • Genetic analyses revealed that the expression of SHAT1 in AZ (Abscission Zone) was positively regulated by the trihelix transcription factor SH4. You can also add sub-section(s) at will.

Labs working on this gene

  • National Center for Gene Research, National Center for Plant Gene Research (Shanghai) and Institute of Plant Physiology and

Ecology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai 200233, China

  • Plant Genome Center, Tsukuba, Ibaraki 305-0856, Japan
  • State Key Laboratory of Systematic and Evolutionary Botany, Key Laboratory of Plant Resources, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China
  • Zhejiang Academy of Agricultural Sciences, Hangzhou 310021, China
  • Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing 100029, China

References

  1. Zhou Y, Lu D, Li C, Luo J, Zhu BF, Zhu J, Shangguan Y, Wang Z, Sang T, Zhou B, Han B. Genetic control of seed shattering in rice by the APETALA2 transcription factor shattering abortion1. Plant Cell. 2012 Mar;24(3):1034-48. doi: 10.1105/tpc.111.094383. Epub 2012 Mar 9. PubMed PMID: 22408071; PubMed Central PMCID: PMC3336138.

Structured Information