Difference between revisions of "Os04g0674700"

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(Created page with "{{JaponicaGene| GeneName = Os04g0674700| Description = Similar to AMP-binding protein (Adenosine monophosphate binding protein 5 AMPBP5)| Version = NM_001060777.1 GI:115461...")
 
(Expression)
 
(5 intermediate revisions by 3 users not shown)
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{{JaponicaGene|
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Please input one-sentence summary here.
GeneName = Os04g0674700|
 
Description = Similar to AMP-binding protein (Adenosine monophosphate binding protein 5 AMPBP5)|
 
Version = NM_001060777.1 GI:115461283 GeneID:4337383|
 
Length = 1983 bp|
 
Definition = Oryza sativa Japonica Group Os04g0674700, complete gene.|
 
Source = Oryza sativa Japonica Group
 
  
  ORGANISM  Oryza sativa Japonica Group
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==Annotated Information==
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
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[[File:162-Os04g0674700.png|right|thumb|227px|'''Figure 5.''' ''Stomatal densities on the adaxial and abaxial surfaces of flag leaves of wild-type (WT) and slac1 mutant plants grown under 350 ppm or 700 ppm [CO 2 ].<ref name="ref1" />.'']]
            Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
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            clade; Ehrhartoideae; Oryzeae; Oryza.
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===Function===
|
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* '''''SLAC1'''''  is  a  stomatal anion channel protein controlling stomatal closure in response to environmental CO2.  
Chromosome = [[:category:Japonica Chromosome 4|Chromosome 4]]|
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* '''''SLAC1''''' function is conserved between  Arabidopsis and rice
AP = Chromosome 4:34844701..34846683|
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===Phenotypic analysis===
CDS = 34844827..34846302,34846389..34846589|
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GCID = <gbrowseImage1>
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* The '''''slac1''''' mutation caused an increase in stomatal conductance concomitant with lowered leaf temperatures, but did not  affect other observable morphological phenotypes of the mutant  plants.  
name=NC_008397:34844701..34846683
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* For example, stomatal density is a representative stomatal phenotype and is known to respond to various environmental factors, such as elevated [CO2] and drought stress, but stomatal density was not affected in the '''''slac1''''' mutant (Fig. 5).
source=RiceChromosome04
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preset=GeneLocation
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You can also add sub-section(s) at will.
</gbrowseImage1>|
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GSID = <gbrowseImage2>
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==Labs working on this gene==
name=NC_008397:34844701..34846683
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* Department of Biology, Faculty of Science, Kyushu University, Fukuoka 812–8581, Japan
source=RiceChromosome04
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* Faculty of Agriculture, Kyushu University, Fukuoka 812–8151, Japan
preset=GeneLocation
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</gbrowseImage2>|
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==References==
CDNA = <cdnaseq>atggacaagctcggcgccaacccggccaactcgtgcgcgctcacgccgctgggcttcctggagcgcgccgccaccgtgttcggcgactgcccgtccgtcgtctaccacgacaccgtcttcacgtggtcgcagacccaccgccgctgcctccgcctcgcctccgcgctcgtctcctccctcggcatctcccgcggcgacgtcgtgtccgtgctcctgccgaacgtgccggcgatgtacgagatgcacttcgccgtgccgatgagcggcgccgtgctgaacagcatcaacacgcggctcgacgcgcgcacggtgtccgtcctgctccgccactccggctccaagctcatcttcgtcgacccggcgctgctccccgtcctccgcgacgcgctccgcctcctcccggcggggcacacggccccgcgcgtcgtcctcgtcgaggatccccatgagaaggagttccctcccgcccccgccgccgcgctgacgtacgagaggctcgtcgagaagggggacccggagttcgcgtgggtgcggccggcgagcgagtgggacccgatgatcctcaactacacctccggcaccacgtcggcgcccaagggggtggtgcactgccaccgggggatcttcctcatcaccgtcgactcgctggtcgactgggcggtgccgccgcggccgacgtacctgtggacgctccccatgttccacgccaatggctggagcttcccatgggggatggccgtggtgggcggcaccaacgtctgcctccgccgcgtcgacgccgccgaggtgttcgacacaatcgcgcgccgcggcgtcaaccacctgtgcggcgcgcccgtcgtgctcaacatgctggcgaacgcgcccgagggcgtgcggaagccgctcccggggaaggtgcggatcctcacggccggcgcgccgccgccggccgccgtgctgtaccgcacggaggcgatcggcttcgaggtcagccacgggtacgggctgacggagaccgcgggtctggtgctctcgtgcgcgtggaagggcgagtgggacaagctcccggcctccgagcgcgcgcggctcaaggcgaggcagggcgtgcgcacgccggggatggccgaggtggacgtcgtggacggcgagaccggccgcagcgtgccccgcgacgggtcgaccatgggcgagatcgtgctccgcggcggctgcatcacgctgggctacctcaacgacgaggcggcgacgaaggcggcgatccgggacaacgggtggttctacaccggcgacgtcggggtgatgcacccggacgggtacgtggagatccgggaccggtccaaggacgtgatcatcagcggcggggagaacatcagcagcgtggaggtggagtccgtgctgtacggccacccggcggtgaacgaggcggcggtggtggcgcggccggacgagttctggggggagacgccgtgcgcgttcgtcagcctcaagcagggcggcggcgcggtgacggcggcggacgtggtcgcgtggagccgggagcgcatgccgcggtacatggtcccaaagacggtgatcttccgcgacgagttaccgaagacgtccaccgggaagatccagaagtacgtgctccggaatatcgccaaggagatggggcccaccacgggcaccaacaccaaacgcaacagtaaaatgtag</cdnaseq>|
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<references>
AA = <aaseq>MDKLGANPANSCALTPLGFLERAATVFGDCPSVVYHDTVFTWSQ                    THRRCLRLASALVSSLGISRGDVVSVLLPNVPAMYEMHFAVPMSGAVLNSINTRLDAR                    TVSVLLRHSGSKLIFVDPALLPVLRDALRLLPAGHTAPRVVLVEDPHEKEFPPAPAAA                    LTYERLVEKGDPEFAWVRPASEWDPMILNYTSGTTSAPKGVVHCHRGIFLITVDSLVD                    WAVPPRPTYLWTLPMFHANGWSFPWGMAVVGGTNVCLRRVDAAEVFDTIARRGVNHLC                    GAPVVLNMLANAPEGVRKPLPGKVRILTAGAPPPAAVLYRTEAIGFEVSHGYGLTETA                    GLVLSCAWKGEWDKLPASERARLKARQGVRTPGMAEVDVVDGETGRSVPRDGSTMGEI                    VLRGGCITLGYLNDEAATKAAIRDNGWFYTGDVGVMHPDGYVEIRDRSKDVIISGGEN                    ISSVEVESVLYGHPAVNEAAVVARPDEFWGETPCAFVSLKQGGGAVTAADVVAWSRER                    MPRYMVPKTVIFRDELPKTSTGKIQKYVLRNIAKEMGPTTGTNTKRNSKM</aaseq>|
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* <ref name="ref1">
DNA = <dnaseqindica>382..1857#95..295#tttcctcgcctccactccaaccaccccgcgatagctggagtcaccggcgttcacacaggcgacagctcgtgctccggcgatcgacgcggcggccatggacaagctcggcgccaacccggccaactcgtgcgcgctcacgccgctgggcttcctggagcgcgccgccaccgtgttcggcgactgcccgtccgtcgtctaccacgacaccgtcttcacgtggtcgcagacccaccgccgctgcctccgcctcgcctccgcgctcgtctcctccctcggcatctcccgcggcgacgtcgtgagcatccatcgatcctttttccttccacggtcatttcgtcgaacaccttcctcgtgttgctaagctaagctggattgagtcaggtgtccgtgctcctgccgaacgtgccggcgatgtacgagatgcacttcgccgtgccgatgagcggcgccgtgctgaacagcatcaacacgcggctcgacgcgcgcacggtgtccgtcctgctccgccactccggctccaagctcatcttcgtcgacccggcgctgctccccgtcctccgcgacgcgctccgcctcctcccggcggggcacacggccccgcgcgtcgtcctcgtcgaggatccccatgagaaggagttccctcccgcccccgccgccgcgctgacgtacgagaggctcgtcgagaagggggacccggagttcgcgtgggtgcggccggcgagcgagtgggacccgatgatcctcaactacacctccggcaccacgtcggcgcccaagggggtggtgcactgccaccgggggatcttcctcatcaccgtcgactcgctggtcgactgggcggtgccgccgcggccgacgtacctgtggacgctccccatgttccacgccaatggctggagcttcccatgggggatggccgtggtgggcggcaccaacgtctgcctccgccgcgtcgacgccgccgaggtgttcgacacaatcgcgcgccgcggcgtcaaccacctgtgcggcgcgcccgtcgtgctcaacatgctggcgaacgcgcccgagggcgtgcggaagccgctcccggggaaggtgcggatcctcacggccggcgcgccgccgccggccgccgtgctgtaccgcacggaggcgatcggcttcgaggtcagccacgggtacgggctgacggagaccgcgggtctggtgctctcgtgcgcgtggaagggcgagtgggacaagctcccggcctccgagcgcgcgcggctcaaggcgaggcagggcgtgcgcacgccggggatggccgaggtggacgtcgtggacggcgagaccggccgcagcgtgccccgcgacgggtcgaccatgggcgagatcgtgctccgcggcggctgcatcacgctgggctacctcaacgacgaggcggcgacgaaggcggcgatccgggacaacgggtggttctacaccggcgacgtcggggtgatgcacccggacgggtacgtggagatccgggaccggtccaaggacgtgatcatcagcggcggggagaacatcagcagcgtggaggtggagtccgtgctgtacggccacccggcggtgaacgaggcggcggtggtggcgcggccggacgagttctggggggagacgccgtgcgcgttcgtcagcctcaagcagggcggcggcgcggtgacggcggcggacgtggtcgcgtggagccgggagcgcatgccgcggtacatggtcccaaagacggtgatcttccgcgacgagttaccgaagacgtccaccgggaagatccagaagtacgtgctccggaatatcgccaaggagatggggcccaccacgggcaccaacaccaaacgcaacagtaaaatgtagcggcatctagccagcagatgtggcacttgctttttagcgtcgtcgtcgtcttcttcactcggacagagtcacagagcagaaatgtctggtgcaggcagaggctgatgcattccgcattgtcatggc</dnaseqindica>|
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Xu Y, Zhang S, Guo H, Wang S, Xu L, Li C, Qian Q, Chen F, Geisler M, Qi Y,
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001060777.1 RefSeq:Os04g0674700]|
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Jiang de A. OsABCB14 functions in auxin transport and iron homeostasis in rice
}}
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(Oryza sativa L.). Plant J. 2014 Jul;79(1):106-17. doi: 10.1111/tpj.12544. Epub
[[Category:Genes]]
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2014 Jun 13. PubMed PMID: 24798203.
[[Category:Japonica mRNA]]
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</ref>
[[Category:Oryza Sativa Japonica Group]]
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</references>
[[Category:Japonica Genes]]
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[[Category:Japonica Chromosome 4]]
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==Structured Information==
[[Category:Chromosome 4]]
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    [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 4]]

Latest revision as of 03:44, 22 October 2016

Please input one-sentence summary here.

Annotated Information

Figure 5. Stomatal densities on the adaxial and abaxial surfaces of flag leaves of wild-type (WT) and slac1 mutant plants grown under 350 ppm or 700 ppm [CO 2 ].[1].

Function

  • SLAC1 is a stomatal anion channel protein controlling stomatal closure in response to environmental CO2.
  • SLAC1 function is conserved between Arabidopsis and rice

Phenotypic analysis

  • The slac1 mutation caused an increase in stomatal conductance concomitant with lowered leaf temperatures, but did not affect other observable morphological phenotypes of the mutant plants.
  • For example, stomatal density is a representative stomatal phenotype and is known to respond to various environmental factors, such as elevated [CO2] and drought stress, but stomatal density was not affected in the slac1 mutant (Fig. 5).

You can also add sub-section(s) at will.

Labs working on this gene

  • Department of Biology, Faculty of Science, Kyushu University, Fukuoka 812–8581, Japan
  • Faculty of Agriculture, Kyushu University, Fukuoka 812–8151, Japan

References

  1. Xu Y, Zhang S, Guo H, Wang S, Xu L, Li C, Qian Q, Chen F, Geisler M, Qi Y, Jiang de A. OsABCB14 functions in auxin transport and iron homeostasis in rice (Oryza sativa L.). Plant J. 2014 Jul;79(1):106-17. doi: 10.1111/tpj.12544. Epub 2014 Jun 13. PubMed PMID: 24798203.

Structured Information