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| − | Please input one-sentence summary here.
| + | The rice '''''Os05g0553700''''' was reported as '''''OsSYP71''''' in 2012 <ref name="ref1" /> by researchers from China. |
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| | ==Annotated Information== | | ==Annotated Information== |
| | + | ===Gene Symbol=== |
| | + | *'''''Os05g0553700''''' '''''<=>''''' '''''OsSYP71,SYP71''''' |
| | ===Function=== | | ===Function=== |
| − | Please input function information here.
| + | * '''''OsSYP71''''' encodes Qc-SNARE protein in rice which belong to the superfamily of SNAREs (soluble N-ethylmaleimide‐sensitive factor attachment protein receptors). |
| − | | + | * SNAREs function as important components of the vesicle trafficking machinery in eukaryotic cells. |
| − | ===Expression===
| + | * '''''OsSYP71''''' is an oxidative stress and rice blast response gene. |
| − | Please input expression information here.
| + | * Qc-SNAREs play an important role in rice response to environmental stresses, and '''''OsSYP71''''' is useful in engineering crop plants with enhanced tolerance to oxidative stress and resistance to rice blast. |
| − | | |
| − | ===Evolution===
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| − | Please input evolution information here.
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| | You can also add sub-section(s) at will. | | You can also add sub-section(s) at will. |
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| | ==Labs working on this gene== | | ==Labs working on this gene== |
| − | Please input related labs here.
| + | * State Key Laboratory of Crop Genetics and Germplasm Enhancement, College of Agriculture, Nanjing Agricultural University, Nanjing 210095, China |
| | | | |
| | ==References== | | ==References== |
| − | Please input cited references here.
| + | <references> |
| | + | * <ref name="ref1"> |
| | + | Bao YM, Sun SJ, Li M, Li L, Cao WL, Luo J, Tang HJ, Huang J, Wang ZF, Wang JF, |
| | + | Zhang HS. Overexpression of the Qc-SNARE gene OsSYP71 enhances tolerance to |
| | + | oxidative stress and resistance to rice blast in rice (Oryza sativa L.). Gene. |
| | + | 2012 Aug 10;504(2):238-44. doi: 10.1016/j.gene.2012.05.011. Epub 2012 May 11. |
| | + | PubMed PMID: 22583826. |
| | + | |
| | + | </ref> |
| | + | </references> |
| | | | |
| | ==Structured Information== | | ==Structured Information== |
| − | {{JaponicaGene|
| + | [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 5]] |
| − | GeneName = Os05g0553700|
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| − | Description = Similar to Syntaxin 71 (AtSYP71)|
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| − | Version = NM_001062799.2 GI:297604881 GeneID:4339549|
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| − | Length = 3511 bp|
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| − | Definition = Oryza sativa Japonica Group Os05g0553700, complete gene.|
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| − | Source = Oryza sativa Japonica Group
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| − | | |
| − | ORGANISM Oryza sativa Japonica Group
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| − | Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
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| − | Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
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| − | clade; Ehrhartoideae; Oryzeae; Oryza.
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| − | |
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| − | Chromosome = [[:category:Japonica Chromosome 5|Chromosome 5]]|
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| − | AP = Chromosome 5:27611836..27615346|
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| − | CDS = 27611979..27612134,27612236..27612364,27613236..27613401,27614094..27614179,27614290..27614358<br>,27614454..27614498,27614602..27614664,27614753..27614829,27615030..27615195<br>|
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| − | GCID = <gbrowseImage1>
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| − | name=NC_008398:27611836..27615346
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| − | source=RiceChromosome05
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| − | preset=GeneLocation
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| − | </gbrowseImage1>|
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| − | GSID = <gbrowseImage2>
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| − | name=NC_008398:27611836..27615346
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| − | source=RiceChromosome05
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| − | preset=GeneLocation
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| − | </gbrowseImage2>|
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| − | CDNA = <cdnaseq>atgagcgtgatcgacatcctcacgcgggtggactccatctgcaagaagtacgacaagtacgacgtcgagaggctcaacggcgccaacgtcgccggcgaggaccccttcgcccgcctctacggctccatcgacgccgacatcaacgaatgcgtcgagaaagcggaggcggcgaagcaggagaagaaccgcgccacggtggtcgcgctcaacgcggagatccggcgaaccaaggccaagctcgtcgaggaggacctgcccaagctgcagcgcctcgcgctgaagaaggtcaaagggctcacaaaagaggaactcgcgacccgtagtgatctggttgctgccttacccgatagaatacaatcaataccagatggtagttcaagtgcaaagaaaaatgggacttggggcgcctcaggatcccgtactggtggagccattaagtttgacacttctgatggcaactttgatgatgagtactttaagggaacagaagaatcaaatcagtttcgtcgggaatatgagatgcgcaaaatgaaacaggatgaaggtttggatattatcggtgaagggctggaaactctgaaaaacatggcatctgatatgaatgaggaactggataggcaagttcccttgatggatgaaatggacgagaaggtggatagagccaacacagatttgaagaataccaacgtcagactaaaagagaccgttcttcagctgagatctagtcgcaacttctgcattgatatcgtcctgctctgtgttattcttggtattgcggcttatctttacaatgttctaaaaaaagtgagaccggactgtgccatggatctattttccacgtcttccggtgatggatggatgagtttcgacgtgtccacgagctgttccctttatttttatctcatctgtgtaatagtagtatggtgttcttccgggacttgcgaacatccttgttga</cdnaseq>|
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| − | AA = <aaseq>MSVIDILTRVDSICKKYDKYDVERLNGANVAGEDPFARLYGSID ADINECVEKAEAAKQEKNRATVVALNAEIRRTKAKLVEEDLPKLQRLALKKVKGLTKE ELATRSDLVAALPDRIQSIPDGSSSAKKNGTWGASGSRTGGAIKFDTSDGNFDDEYFK GTEESNQFRREYEMRKMKQDEGLDIIGEGLETLKNMASDMNEELDRQVPLMDEMDEKV DRANTDLKNTNVRLKETVLQLRSSRNFCIDIVLLCVILGIAAYLYNVLKKVRPDCAMD LFSTSSGDGWMSFDVSTSCSLYFYLICVIVVWCSSGTCEHPC</aaseq>|
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| − | DNA = <dnaseqindica>144..299#401..529#1401..1566#2259..2344#2455..2523#2619..2663#2767..2829#2918..2994#3195..3360#accgtgcgctgcttcggtttgctcgggcggagaaaggaagggcagcgtcgcggttgcttgcttcctcccgaatcctcgcctcgatctcgctcgcgggcgggcggagggatcgtgatcgggatcgggatcgggggcgcgcgaagatgagcgtgatcgacatcctcacgcgggtggactccatctgcaagaagtacgacaagtacgacgtcgagaggctcaacggcgccaacgtcgccggcgaggaccccttcgcccgcctctacggctccatcgacgccgacatcaacgaatgcgtcgaggtctggatgcgaattcccttcctcctctctgtctccgcgtccgatttggtggttggctggctcctcccctcgatctgaatctggggggcactttgtttcagaaagcggaggcggcgaagcaggagaagaaccgcgccacggtggtcgcgctcaacgcggagatccggcgaaccaaggccaagctcgtcgaggaggacctgcccaagctgcagcgcctcgcgctgaagaaggttactgatctatacactcccccttcttagtttgggtgaatcatgctagatctgcggatactgtggcccgaggactcggtctctccttgttttagtgtagtactcgtagtagcttccaccttaccgcggatggtggatgtctaaatttaggatgactgtaaggaggctctcgtcgttgaggaagtgatttgcatgggccatttgatgttgatggaatggaatttaggattggtggactatgtttgattttttggggggaaatttggggtttcgactgtctgggactagacttttctaaattttactatgaacgagtcaagacttttcattggattgctagaatgaacactaatcgggtgaaactggggtctagatagtctcacagaggaactcaccacatagtcgtgtggttacacattgtattctgtaattggcgtcaaatatgctgtgcacaatccatatgaggtctcttcatcgtttcagtagcctgtgtttattaaagactagatttatttattttaattaggctattgggtaaaggtgatgcagttgatgttaagccttccaatattttctgttgacccagaacttaatgtactctacattttaacttgacattgccatagtgttaactttgtaagattgttgttcccttgctaaagatttctgtccacgccacctgcatgtttgcactaggcaatgtgatgtccttgacactctttcttcatacatgcctgtgttggttatactatatttttaaaacatgcttttacattattcaattatatgatatctataaattgtacataacagtttttcacctagaattttgaagaattggttttcaatattttgttgcaacttgcaacaggtcaaagggctcacaaaagaggaactcgcgacccgtagtgatctggttgctgccttacccgatagaatacaatcaataccagatggtagttcaagtgcaaagaaaaatgggacttggggcgcctcaggatcccgtactggtggagccattaagtttgacacttctggttagtaagcatcattcaacatatcacatgtgtgttctgtatattgatatacaaaatatgcatattttttttctttaaagatgtgtccaacttctacttcccctacgcatcggttgttctagattgcagtaagctgtacattttgcatttgtcggttcattttataagtatcctgcatgtgtatgaggtcgcgtttccaatttatgaaggaatcctaatattaggttcatgcttccatatgcacatgtgcttttttacgacgtcatttttggtaccgcaccatcatcaatgtcacgtgccaacttctactttttagtacactatgttagtgtatattttgattaggtaactcttgtttctatatcagtatgacagtgttgaaatatacaaccatcagattgacagagttttgatcaaccatgcgtgccatcatgcctaaagttgtttgagcaatggttttctgtttcttttctcatcatttcgggcatgctcctgttggatgctcttgttggtcctcttgaaggagtcatgagctgactgattaaccatgcgtgcagtcatgcctaaagttgtttgagcaatggtttttctgtttcttttctcatcatttcgggcatgatcctgttagatgcttttgttggtcctcttgaaggagccatgagctgacctactttcccgcttgccacatacagatggcaactttgatgatgagtactttaagggaacagaagaatcaaatcagtttcgtcgggaatatgagatgcgcaaaatgaaacaggtaatatattaattccccgaacacgcttttcttccttttcatttttggctactgctggaagtgggatttcttatgtaaggtgacctgtgtatggaattgaaattctgcaggatgaaggtttggatattatcggtgaagggctggaaactctgaaaaacatggcatctgatatgaatgaggttggttgctgtgcttcatcttgagttatacaatactatacgatgcaatggttatatgaaacatagttaccatgctcaatttttgtgatcatcaggaactggataggcaagttcccttgatggatgaaatggacgagaaggttggttctccaatagccatggattcctcttctgcaattgtgcaatatccagcaatgcttagtttatttatctcttatttatatggtgtactgatgaatgtaggtggatagagccaacacagatttgaagaataccaacgtcagactaaaagagaccgttcttcaggtaacacctagcactaacttcccttggcatgcttggttgattgcttgagttaaatacttattcgcttctcctcgtgaactgttatcagctgagatctagtcgcaacttctgcattgatatcgtcctgctctgtgttattcttggtattgcggcttatctttacaagtaagtgtttttgtttccagacaagcttcaataccgaagtaaacaatcttctcgacattctctctttacacgacataagaccattcccacattcttaattatatttcttgcatattttcttttagtcatactagtgaggtagcttgttactatagttgttagaccatttgctaatatttctccacgctttcgtgttgcagtgttctaaaaaaagtgagaccggactgtgccatggatctattttccacgtcttccggtgatggatggatgagtttcgacgtgtccacgagctgttccctttatttttatctcatctgtgtaatagtagtatggtgttcttccgggacttgcgaacatccttgttgaaagttgaaacagtgagcattgtgcgtgcgaaaacctgacgtcttctgtacatctgcgagtttaattcttagcaagagcgtatcaaacattctgttatgaactatgtaaaccttctcatgtatattcattgcatcagttctttggttgtgcc</dnaseqindica>|
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| − | Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001062799.2 RefSeq:Os05g0553700]|
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| − | }}
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| − | [[Category:Genes]] | |
| − | [[Category:Japonica mRNA]]
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| − | [[Category:Oryza Sativa Japonica Group]] | |
| − | [[Category:Japonica Genes]] | |
| − | [[Category:Japonica Chromosome 5]]
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| − | [[Category:Chromosome 5]]
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