|
|
| (19 intermediate revisions by 4 users not shown) |
| Line 1: |
Line 1: |
| − | Please input one-sentence summary here.
| + | The rice '''''Os06g0142600''''' was reported as '''''Hd17''''' in 2014 <ref name="ref1" /> by researchers from China. |
| | | | |
| | ==Annotated Information== | | ==Annotated Information== |
| | + | ===Gene Symbol=== |
| | + | *'''''Os06g0142600''''' '''''<=>''''' '''''Hd17, EF7, Ef7, OsELF3-1, OsELF3''''' |
| | ===Function=== | | ===Function=== |
| − | Please input function information here.
| + | * Heading date 17 (Hd17) is a gene that encodes a homolog of Arabidopsis EARLY FLOWERING 3 (ELF3),which plays important roles in maintaining circadian rhythms, and that the QTL lies within the pathway responsible for rice’s photoperiodic flowering through the modulation of the transcription level of a flowering repressor, Grain number, plant height and heading date7(Ghd7). |
| − | | + | * Natural variation in Hd17 may change the transcription level of a flowering repressor, Grain number, plant height and heading date 7 (Ghd7), suggesting that Hd17 is part of rice’s photoperiodic flowering pathway<ref name="ref1" />. |
| − | ===Expression===
| |
| − | Please input expression information here.
| |
| − | | |
| − | ===Evolution===
| |
| − | Please input evolution information here.
| |
| − | | |
| − | You can also add sub-section(s) at will.
| |
| | | | |
| | ==Labs working on this gene== | | ==Labs working on this gene== |
| − | Please input related labs here.
| + | * National Institute of Agrobiological Sciences, Tsukuba, Ibaraki, 305-8634 Japan |
| | + | * Present address: National Institute of Crop Science, Tsukuba, Ibaraki, 305-8518 Japan |
| | | | |
| | ==References== | | ==References== |
| − | Please input cited references here.
| + | <references> |
| − | | + | * <ref name="ref1"> |
| | + | Matsubara K, Ogiso-Tanaka E, Hori K, Ebana K, Ando T, Yano M. Natural |
| | + | variation in Hd17, a homolog of Arabidopsis ELF3 that is involved in rice |
| | + | photoperiodic flowering. Plant Cell Physiol. 2012 Apr;53(4):709-16. doi: |
| | + | 10.1093/pcp/pcs028. Epub 2012 Mar 6. PubMed PMID: 22399582. |
| | + | </ref> |
| | + | </references> |
| | ==Structured Information== | | ==Structured Information== |
| − | {{JaponicaGene|
| |
| − | GeneName = Os06g0142600|
| |
| − | Description = Conserved hypothetical protein|
| |
| − | Version = NM_001063305.2 GI:297605157 GeneID:4340087|
| |
| − | Length = 5003 bp|
| |
| − | Definition = Oryza sativa Japonica Group Os06g0142600, complete gene.|
| |
| − | Source = Oryza sativa Japonica Group
| |
| | | | |
| − | ORGANISM Oryza sativa Japonica Group
| |
| − | Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
| |
| − | Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
| |
| − | clade; Ehrhartoideae; Oryzeae; Oryza.
| |
| − | |
| |
| − | Chromosome = [[:category:Japonica Chromosome 6|Chromosome 6]]|
| |
| − | AP = Chromosome 6:2233133..2238135|
| |
| − | CDS = 2235411..2236400,2237799..2238059|
| |
| − | GCID = <gbrowseImage1>
| |
| − | name=NC_008399:2233133..2238135
| |
| − | source=RiceChromosome06
| |
| − | preset=GeneLocation
| |
| − | </gbrowseImage1>|
| |
| − | GSID = <gbrowseImage2>
| |
| − | name=NC_008399:2233133..2238135
| |
| − | source=RiceChromosome06
| |
| − | preset=GeneLocation
| |
| − | </gbrowseImage2>|
| |
| − | CDNA = <cdnaseq>atggcgacgaggggaggaggcggaggaggaggagggaaggaggcgaaggggaaggtgatgggcccgctgttcccgcggctccacgtcaacgacgcggccaagggcggaggcccgcgggcgccgccccggaacaagatggcgctctacgagcagttcaccgtgccctcgcatcgcttcagcggcggaggaggcggcggcggagtaggaggcagccccgcgcactcgacgtcggcggcgagccagagccagagccagagccaggtttatggacgtgacagttctctgttccagccgttcaatgtgccttccaatcgacctggccattctactgaaaagatcaattcagataagatcaacaagaagattagtggttcaagaaaagaactggggatgttatcctctcagactaagggcatggatatttatgcttcaagatcaactgctgaggcaccacaaagaagagcagaaaatacaataaagagttcttcgggaaagagattggccgatgatgatgaatttatggttccttctgtcttcaattccagatttcctcaatatagtactcaagagaatgcaggggttcaagaccaatcaacaccccttgttgctgcaaatccacacaaaagcccttcaacagtgtccaaatcatccacaaagtgttataacactgttagcaagaaattggagagaatccatgtttctgatgtgaaatcaaggacccctttgaaagacaaggagatggaagcagcacagacatccaaaaacgtggaagttgaaaaaagttcatcctttcatgcttccaaagatatgtttgaaagcaggcatgctaaagtatatcctaagatggataagacgggcattataaatgattctgatgagccacatggtggaaatagtgggcatcaagcgacaagcagaaatggaggttccatgaaatttcagaaccctccaatgagaagaaatgaaatttcctctaatccatcttctgaaaatactgataggcattataatttaccgcaaggaggcatagaggaaacaggtacaaagagaaaaaggttgctagaacaacacgatgcagagaaaagtgatgatgtgtcaaggttgctagaacaacacgatgcagagaacattgatgatgtgtctgattcctcggtggagtgtataactggttgggagatttctccagataaaattgttggagccattggtacaaagcatttctggaaagcaagacgtgctattatgaagtaa</cdnaseq>|
| |
| − | AA = <aaseq>MATRGGGGGGGGKEAKGKVMGPLFPRLHVNDAAKGGGPRAPPRN KMALYEQFTVPSHRFSGGGGGGGVGGSPAHSTSAASQSQSQSQVYGRDSSLFQPFNVP SNRPGHSTEKINSDKINKKISGSRKELGMLSSQTKGMDIYASRSTAEAPQRRAENTIK SSSGKRLADDDEFMVPSVFNSRFPQYSTQENAGVQDQSTPLVAANPHKSPSTVSKSST KCYNTVSKKLERIHVSDVKSRTPLKDKEMEAAQTSKNVEVEKSSSFHASKDMFESRHA KVYPKMDKTGIINDSDEPHGGNSGHQATSRNGGSMKFQNPPMRRNEISSNPSSENTDR HYNLPQGGIEETGTKRKRLLEQHDAEKSDDVSRLLEQHDAENIDDVSDSSVECITGWE ISPDKIVGAIGTKHFWKARRAIMK</aaseq>|
| |
| − | DNA = <dnaseqindica>1736..2725#77..337#atggccacaaaaaccggcgacctcctccaccccgccatggcctgacgcccccgagaagctgctgcggcgggaggcgatggcgacgaggggaggaggcggaggaggaggagggaaggaggcgaaggggaaggtgatgggcccgctgttcccgcggctccacgtcaacgacgcggccaagggcggaggcccgcgggcgccgccccggaacaagatggcgctctacgagcagttcaccgtgccctcgcatcgcttcagcggcggaggaggcggcggcggagtaggaggcagccccgcgcactcgacgtcggcggcgagccagagccagagccagagccaggtgactcgacgtcctgcccgtatgatcgattcgattgggggtagtgtgtgcgactgctaaattggtactagtaggcgacaattctgtgcaaatggagctaaacgccttgcaaatcgaatcgaattagaagcctaaattggtaggcaataattctgtgcaatggagctaaacttccttgcaaatcgaatagaactaaaagctgggaagataatttcgaggcacaaatggtgccctcgacgtcgacgagctaggtcagagggggcgtttcacgccttaccctttgtagttatctcggttgggatagatgaattgatgggcgaatttagtgcaacggagctaaacacatggaaaaattggataagattaaggccgagaagcccagtttgaggcacaaatgccatgttccttttgtgctgattaatctatcatgccgtcgacatgtgattcaattacttgcaaatatagtcatacaattgtggtaggagtaacatgcttgcacgttgtcatagtgtcattattgatctttctccgtgctgataactcacttgtgttgaaggcgaaagagcagaacaaaaccattatatgcagtttacatcagctcttccggtaaagttttggagacggggcataagttccttgcaaacaatatcggatattatagcttattgcaaattgtatatggccagatatgctatgattgtgtttgctgaggtctggtgtttgtaatatacaaacaaaaaggtccacatgtgaaactgcatgtagcgcaggtggcaaagagtagccgtagtgctgctcaacgtactgtgttctattctccctgacgtgctcaccttccttaaatcattgacactaggttcctccttagtgtcttgcatttttgcctgccgaaaaaaaaaggtccacgtgaaagggaatgataaaaatggtggttgatatgctttgattgtcaggcacacgttcaacctgtatgtgataaatatcaacggttttctaatactgttttcagcaaggatttaggagtggaaaatattctttagaacaaatctgcaatagcctcccacaacacatccaactaccttttgataatgggatagttatagacatgaagtgcgaatggcaaaagtccaagtcatagatttccaaatgaagaaatgtgaacaaaataagaaagaaagaagtccatttgcagtattatgtctcttttgcccttctttgggtcgaaaataaaataaaaaatcgagatcttaccatgagatacttaatctcccaccactttttctaattcaacatggaagttcttggatagtttaaatacgcttcctaccaattagcgtggaatcctcgcaatttttcactaaatctagtagtactgaaatggattttattttcttccaggtttatggacgtgacagttctctgttccagccgttcaatgtgccttccaatcgacctggccattctactgaaaagatcaattcagataagatcaacaagaagattagtggttcaagaaaagaactggggatgttatcctctcagactaagggcatggatatttatgcttcaagatcaactgctgaggcaccacaaagaagagcagaaaatacaataaagagttcttcgggaaagagattggccgatgatgatgaatttatggttccttctgtcttcaattccagatttcctcaatatagtactcaagagaatgcaggggttcaagaccaatcaacaccccttgttgctgcaaatccacacaaaagcccttcaacagtgtccaaatcatccacaaagtgttataacactgttagcaagaaattggagagaatccatgtttctgatgtgaaatcaaggacccctttgaaagacaaggagatggaagcagcacagacatccaaaaacgtggaagttgaaaaaagttcatcctttcatgcttccaaagatatgtttgaaagcaggcatgctaaagtatatcctaagatggataagacgggcattataaatgattctgatgagccacatggtggaaatagtgggcatcaagcgacaagcagaaatggaggttccatgaaatttcagaaccctccaatgagaagaaatgaaatttcctctaatccatcttctgaaaatactgataggcattataatttaccgcaaggaggcatagaggaaacaggtacaaagagaaaaaggttgctagaacaacacgatgcagagaaaagtgatgatgtgtcaaggttgctagaacaacacgatgcagagaacattgatgatgtgtctgattcctcggtggagtgtataactggttgggagatttctccagataaaattgttggagccattggtacaaagcatttctggaaagcaagacgtgctattatgaagtaagtaaaactatccttttgagcttagtttggcccactcaaactagacttgtttgcagctctaattacgtataggtagctttgatgaataaaatttgttttgtttcccttgctttactgttatttgctcttaatttgcggttgatcttaatcatcttagacagaaaaacatgatgactatctcgtttgtttttggtttatttcatatttgaatgccaatagatgtcagctccagatgatatttcaaatacctcatgcatggaaactgtgcatacttatgccaaattttgggcttacaagtcagcatgtctacaaatttctttggcagaattaatatatatctagttcaacatttgctgatttgtaattggattagttgtctgcagaatgccggcatgttttattttcctttcaactaggtcaatcagttttgttgttgtctgttgttcttgtccacctacacctgtactactgaaatgttctcttttggagatgtcaatgaaaattttaatctatagtggtttcaattttattttcattttagtcaagaagaatggcataatctcatttaaaaagattgtaaaagtgtccctgttaaagtgatattgtaggtattgctttaccaagctactgtatgattccctttattgttttacactctaatcttctttaaactctatgcagtcaacagagggtgtttgctgtccaggtttttgagctgcataagttggtaaaagtgagtctagcaaatttctcttccttctagccactcttaagcaggttaattcgtggataggattttgtccataatctgtttataacccacacttgtatttgacttacaatcaggtgcagaagttgattgcagcatcgccacatgtacttattgaaagtgatccttgccttggcaatgccttgttgggtagcaagaacaagctggtggaagaaaacctgaaagcacaacctcttttagtcgcaaccatcgatgacgtggagccaagtctacagcaaccggaggtatcaaaagaaaacactgaagacagcccaccctcccctcatgatactgggcttggcagtggtcaacgtgatcaagctgcaacaaatggcgtctctaaaagcaatcgtcgagctacacctgttgcttctgataacaaacaaaataactggggcgttcaacttcaaccacctcaaaatcaatggcttgtccctgtcatgtctcctttggaaggccttgtctataagccttattctggtccgtgccctccagctggtagcatattggccccgttttatgccaactgtactcctttgagtcttccatcaacagctggagatttcatgaactcggcatacggtgttcctatgcctcatcagccacaacatatgggtgctcctggccctccttccatgcctatgaactacttcccgcctttcagcataccagtgatgaacccaactgcaccggcacctgtagtcgaacaagggagacatccttcgatgccacagccttatgggaactttgagcagcagtcgtggatctcatgtaacatgtcacatccaagtggcatttggagatttcatgcctcaagagatagcgaggcacaggccagcagcgctagcagtccttttgacaggttccaatgcagtggaagtggtcctgtatccgccttccccacagtatcagctcagaacaaccagcctcagccctcatatagcagccgggacaaccagaccaatgttatcaaggttgttccacataattcacgaactgcttcagagtcagcagcacggattttccggtcaatacaaatggaacggcaacgagatgattgatagccatgagaactggcaattttatgctggatgcatttgatgacttggtaaatgtagagaagaggtttgccagattatggtgacccctatatttatcctgaccgtttatagacagatgatgatactgtatattctcaagggcgggctccgtcagggtgatgtcgccccttcgtcaatttgtaatgtattttgtacagtaggacaggacagtatctgtttaactttaacgctatgtaaagccattgctggtcagttaagcagaataatactaaagctaatgagctggggaaaagaccccgctctttttatctctttcttttgtgaaccctgattacgagttaaggccccgcgccatttgtggggatttgctcttataagtgtgtgatctatattgcaaacagaatggagatatatgatttttggatatatgtaatgtgtgccagtatttt</dnaseqindica>|
| |
| − | Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001063305.2 RefSeq:Os06g0142600]|
| |
| − | }}
| |
| | [[Category:Genes]] | | [[Category:Genes]] |
| | [[Category:Japonica mRNA]] | | [[Category:Japonica mRNA]] |
