Difference between revisions of "Os06g0212900"

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(Labs working on this gene)
(Labs working on this gene)
 
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Please input one-sentence summary here.
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part of a killer-protector system was found at the S5 locus. ORF3(Os06g0212900) act as the protector to prevent ER stress and produce normal gametes.
  
 
==Annotated Information==
 
==Annotated Information==
 
===Function===
 
===Function===
 +
[[File:1.jpg|right|thumb|350px|''Schematic representation of the killer-protector system in an indica-japonica hybrid regulated by the S5 locus.<ref name="ref1" />'']]
 
A killer-protector system was found at the S5 locus encoded by three tightly linked genes [Open Reading Frame 3 (ORF3)to ORF5] regulates fertility in indica japonica hybrids. During female sporogenesis, the action of ORF5+ (killer) and ORF4+ (partner) causes endoplasmic reticulum (ER) stress. ORF3+ (protector) prevents ER stress and produces normal gametes, but ORF3–cannot prevent ER stress, resulting in premature programmed cell death and leads to embryo-sac abortion. Preferential transmission ofORF3+ gametes results in segregation distortion in the progeny. These results add to our understanding of differences betweenindica andjaponica rice and may aid in rice genetic improvement.<ref name="ref1" />
 
A killer-protector system was found at the S5 locus encoded by three tightly linked genes [Open Reading Frame 3 (ORF3)to ORF5] regulates fertility in indica japonica hybrids. During female sporogenesis, the action of ORF5+ (killer) and ORF4+ (partner) causes endoplasmic reticulum (ER) stress. ORF3+ (protector) prevents ER stress and produces normal gametes, but ORF3–cannot prevent ER stress, resulting in premature programmed cell death and leads to embryo-sac abortion. Preferential transmission ofORF3+ gametes results in segregation distortion in the progeny. These results add to our understanding of differences betweenindica andjaponica rice and may aid in rice genetic improvement.<ref name="ref1" />
  
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==Labs working on this gene==
 
==Labs working on this gene==
*National Key Laboratory of Crop Genetic Improvement and National Centre of Plant Gene Research, Huazhong Agricultural University, Wuhan 430070, China.
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* National Key Laboratory of Crop Genetic Improvement and National Centre of Plant Gene Research, Huazhong Agricultural University, Wuhan 430070, China.
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* School of Life Sciences, Chinese University of Hong Kong, Shatin, New Territories, Hong Kong 999077, China.
  
 
==References==
 
==References==
 
<references>
 
<references>
 
<ref name="ref1">Jiangyi Yang, Xiaobo Zhao, Ke Cheng, Hongyi Du, Yidan Ouyang, Jiongjiong Chen, Shuqing Qiu, Jianyan Huang, Yunhe Jiang, Liwen Jiang, Jihua Ding, Jia Wang, Caiguo Xu, Xianghua Li, Qifa Zhang. (2012) A Killer-Protector System Regulates Both Hybrid Sterility and Segregation Distortion in Rice. Science 337: 1336-1340.</ref>
 
<ref name="ref1">Jiangyi Yang, Xiaobo Zhao, Ke Cheng, Hongyi Du, Yidan Ouyang, Jiongjiong Chen, Shuqing Qiu, Jianyan Huang, Yunhe Jiang, Liwen Jiang, Jihua Ding, Jia Wang, Caiguo Xu, Xianghua Li, Qifa Zhang. (2012) A Killer-Protector System Regulates Both Hybrid Sterility and Segregation Distortion in Rice. Science 337: 1336-1340.</ref>
 +
</references>
  
 
==Structured Information==
 
==Structured Information==
{{JaponicaGene|
 
GeneName = Os06g0212900|
 
Description = Heat shock protein Hsp70 family protein|
 
Version = NM_001063661.1 GI:115467053 GeneID:4340470|
 
Length = 2022 bp|
 
Definition = Oryza sativa Japonica Group Os06g0212900, complete gene.|
 
Source = Oryza sativa Japonica Group
 
  
  ORGANISM  Oryza sativa Japonica Group
 
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
 
            Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
 
            clade; Ehrhartoideae; Oryzeae; Oryza.
 
|
 
Chromosome = [[:category:Japonica Chromosome 6|Chromosome 6]]|
 
AP = Chromosome 6:5744189..5746210|
 
CDS = 5744384..5744924,5745012..5745469,5745593..5745948,5746038..5746095|
 
GCID = <gbrowseImage1>
 
name=NC_008399:5744189..5746210
 
source=RiceChromosome06
 
preset=GeneLocation
 
</gbrowseImage1>|
 
GSID = <gbrowseImage2>
 
name=NC_008399:5744189..5746210
 
source=RiceChromosome06
 
preset=GeneLocation
 
</gbrowseImage2>|
 
CDNA = <cdnaseq>atggggcgtcgtcgtcttctgttgagcgatctactgctgctgctgctcatcgccatcgcggtggcaggggcagcggcggcgatcgcgatcccaagagcggcgccggcgttcggagttgaaactgggtggccgccggagcactgcttgcgctgcttcgctccaccggatgcccccttcgtcctgggcgccgccgcggccatccatctcggcaacaccaactcctgcatcgccggctacgacgacgacgacgctcccctgggggccaagcgtagctactaccagttctgcatcccctcctgggtagccctcgcacacgacaatggcaccgtcatctccggcgaggccgctatgaaccgcgccgccctcagcccctccacagctgtctccgccttcatgcgcctcctacacagaagggtggaggacgatgtggtgaagagagagatagagcttgtgccgtacaagtttaccaagatgctgggatgggtctccgtccaactagacacagatgctgaattctctgtcgaccatctcgccggcatcctcatctcccacctcaagcacacggcggaggcgcacctgggccgccacatcaacaatgctgtcatcaccctacccagtcgactcagctactccgccgatggcaggcaggtcctcagctcggcggcgaaggagtacagcggcttcagggccgtcaaggtcgtcgacgagcacatcgcggcggccgcggcgtatgggcaccacaccaagcagggtgaccgcaaggccatccttgtcttccatctcggcggccgcacctcccacgcaaccatcttcaagttcgtcgacggcacggctcgcctcatcgcgacgcgagctcatcatttcctcggaggtgacgatttcacggcgaggatcgtggaccacatggtggagcacatcaaggagcagcatggcagggacgtacggcaggaggagaaggcaatggtgaggctaagggtggcgtgcgagcacgccaagaaggcactgagcgagcaacaagagaccctggtgcagatggactcgcttctggacgacggcgcggtcttctccgcgacgctgacgcgggccaagttcgaggagctcaaccacgacctgttggacagagccatggcgctggtgaaggaggtggtggtgacgacgggaggagtggaggtggtggacgaggttcttgtcgtcggcggcagcgcgaggattcccaaggttcgtcagctcgtcaaggactacttcaatggcaacggcaatggcacgcacccaaacagtcgcggttgcaaggggccggtggatgtggaaccagaggatgccgtgcttcatggcgccgcgcttctttcccgtcctctacctgttgcagagggaacagcagcagctcggtccatcggttccgtcggaggcatctga</cdnaseq>|
 
AA = <aaseq>MGRRRLLLSDLLLLLLIAIAVAGAAAAIAIPRAAPAFGVETGWP                    PEHCLRCFAPPDAPFVLGAAAAIHLGNTNSCIAGYDDDDAPLGAKRSYYQFCIPSWVA                    LAHDNGTVISGEAAMNRAALSPSTAVSAFMRLLHRRVEDDVVKREIELVPYKFTKMLG                    WVSVQLDTDAEFSVDHLAGILISHLKHTAEAHLGRHINNAVITLPSRLSYSADGRQVL                    SSAAKEYSGFRAVKVVDEHIAAAAAYGHHTKQGDRKAILVFHLGGRTSHATIFKFVDG                    TARLIATRAHHFLGGDDFTARIVDHMVEHIKEQHGRDVRQEEKAMVRLRVACEHAKKA                    LSEQQETLVQMDSLLDDGAVFSATLTRAKFEELNHDLLDRAMALVKEVVVTTGGVEVV                    DEVLVVGGSARIPKVRQLVKDYFNGNGNGTHPNSRGCKGPVDVEPEDAVLHGAALLSR                    PLPVAEGTAAARSIGSVGGI</aaseq>|
 
DNA = <dnaseqindica>1287..1827#742..1199#263..618#116..173#atagtacctgtgggatcgaaaggcactgacgaactcgatcaagaaggagtagtcctatcatataattgctgattcagtgattcgattccgtcgagactcgagagggaggcgaagcatggggcgtcgtcgtcttctgttgagcgatctactgctgctgctgctcatcgccatcggtgagtagactctgccatcggatggacacactagtacttgtaattaattaattaatattttgtctcttgagctttcctcccccttgcagcggtggcaggggcagcggcggcgatcgcgatcccaagagcggcgccggcgttcggagttgaaactgggtggccgccggagcactgcttgcgctgcttcgctccaccggatgcccccttcgtcctgggcgccgccgcggccatccatctcggcaacaccaactcctgcatcgccggctacgacgacgacgacgctcccctgggggccaagcgtagctactaccagttctgcatcccctcctgggtagccctcgcacacgacaatggcaccgtcatctccggcgaggccgctatgaaccgcgccgccctcagcccctccacagctgtctccgccttcatgcgcctcctacacagaaggcaattcccccttccctcccctaaattcgttcttggtttgccagaccaattggggtagtttgtactagtaacaaacatcaaccggttattaatttgctgtgcgtgcccaattttgttaatcagggtggaggacgatgtggtgaagagagagatagagcttgtgccgtacaagtttaccaagatgctgggatgggtctccgtccaactagacacagatgctgaattctctgtcgaccatctcgccggcatcctcatctcccacctcaagcacacggcggaggcgcacctgggccgccacatcaacaatgctgtcatcaccctacccagtcgactcagctactccgccgatggcaggcaggtcctcagctcggcggcgaaggagtacagcggcttcagggccgtcaaggtcgtcgacgagcacatcgcggcggccgcggcgtatgggcaccacaccaagcagggtgaccgcaaggccatccttgtcttccatctcggcggccgcacctcccacgcaaccatcttcaagttcgtcgacggcacggctcgcctcatcgcgacgcgagctcatcatttcctcggaggcaagatcgatcaatgccctgcttctttcttaaatactagtacaaccaattaatttttctttcttttttttttgacatataatgtaggtgacgatttcacggcgaggatcgtggaccacatggtggagcacatcaaggagcagcatggcagggacgtacggcaggaggagaaggcaatggtgaggctaagggtggcgtgcgagcacgccaagaaggcactgagcgagcaacaagagaccctggtgcagatggactcgcttctggacgacggcgcggtcttctccgcgacgctgacgcgggccaagttcgaggagctcaaccacgacctgttggacagagccatggcgctggtgaaggaggtggtggtgacgacgggaggagtggaggtggtggacgaggttcttgtcgtcggcggcagcgcgaggattcccaaggttcgtcagctcgtcaaggactacttcaatggcaacggcaatggcacgcacccaaacagtcgcggttgcaaggggccggtggatgtggaaccagaggatgccgtgcttcatggcgccgcgcttctttcccgtcctctacctgttgcagagggaacagcagcagctcggtccatcggttccgtcggaggcatctgatctctctcgtgtagcttatgctttggctacgacgatgaaccaaggtgggtgcgcttcaggttggagcttacagtgagtgtgggtcattcttgccttctggagtcgttttactagttgtaacatgtagcactaaccactaaataattgttcatttccctgtgaaattctgaatgagacacctccttttgtcaagtc</dnaseqindica>|
 
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001063661.1 RefSeq:Os06g0212900]|
 
}}
 
 
[[Category:Genes]]
 
[[Category:Genes]]
 
[[Category:Japonica mRNA]]
 
[[Category:Japonica mRNA]]

Latest revision as of 05:57, 22 October 2016

part of a killer-protector system was found at the S5 locus. ORF3(Os06g0212900) act as the protector to prevent ER stress and produce normal gametes.

Annotated Information

Function

Schematic representation of the killer-protector system in an indica-japonica hybrid regulated by the S5 locus.[1]

A killer-protector system was found at the S5 locus encoded by three tightly linked genes [Open Reading Frame 3 (ORF3)to ORF5] regulates fertility in indica japonica hybrids. During female sporogenesis, the action of ORF5+ (killer) and ORF4+ (partner) causes endoplasmic reticulum (ER) stress. ORF3+ (protector) prevents ER stress and produces normal gametes, but ORF3–cannot prevent ER stress, resulting in premature programmed cell death and leads to embryo-sac abortion. Preferential transmission ofORF3+ gametes results in segregation distortion in the progeny. These results add to our understanding of differences betweenindica andjaponica rice and may aid in rice genetic improvement.[1]

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

  • National Key Laboratory of Crop Genetic Improvement and National Centre of Plant Gene Research, Huazhong Agricultural University, Wuhan 430070, China.
  • School of Life Sciences, Chinese University of Hong Kong, Shatin, New Territories, Hong Kong 999077, China.

References

  1. 1.0 1.1 Jiangyi Yang, Xiaobo Zhao, Ke Cheng, Hongyi Du, Yidan Ouyang, Jiongjiong Chen, Shuqing Qiu, Jianyan Huang, Yunhe Jiang, Liwen Jiang, Jihua Ding, Jia Wang, Caiguo Xu, Xianghua Li, Qifa Zhang. (2012) A Killer-Protector System Regulates Both Hybrid Sterility and Segregation Distortion in Rice. Science 337: 1336-1340.

Structured Information