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| − | {{JaponicaGene|
| + | The rice '''''Os07g0497000''''' was reported as '''''OsCHR4''''' in 2012 <ref name="ref1" /> by researchers from China. |
| − | GeneName = Os07g0497000|
| |
| − | Description = Similar to Mi-2 autoantigen-like protein (Helicase-like protein)|
| |
| − | Version = NM_001066240.1 GI:115472212 GeneID:4343299|
| |
| − | Length = 8411 bp|
| |
| − | Definition = Oryza sativa Japonica Group Os07g0497000, complete gene.|
| |
| − | Source = Oryza sativa Japonica Group
| |
| | | | |
| − | ORGANISM Oryza sativa Japonica Group
| + | ==Annotated Information== |
| − | Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
| + | ===Gene Symbol=== |
| − | Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
| + | *'''''Os07g0497000''''' '''<=>''' '''''OsCHR4,Oschr4,CHR4''''' |
| − | clade; Ehrhartoideae; Oryzeae; Oryza.
| + | ===Function=== |
| − | |
| + | * '''''OsCHR4''''' is a rice chromatin-remodeling factor required for early chloroplast development in adaxial mesophyll |
| − | Chromosome = [[:category:Japonica Chromosome 7|Chromosome 7]]|
| + | ===Phenotypic analysis=== |
| − | AP = Chromosome 7:19285640..19294050|
| + | * The '''''Oschr4''''' mutant exhibited defective chloroplasts in adaxial mesophyll, but not in abaxial mesophyll. Ultrastructural observations indicated that proplastid growth and/or thylakoid membrane formation in adaxial mesophyll cells was blocked in the Oschr4 mutant. |
| − | CDS = 19291140..19291195,19291899..19292070,19292410..19294050|
| + | * The transcripts of some nuclear- and plastid-encoded genes required for early chloroplast development and photosynthesis were decreased in the adaxial albino mesophyll of the '''''Oschr4''''' mutant. |
| − | GCID = <gbrowseImage1>
| + | ===Expression=== |
| − | name=NC_008400:19285640..19294050
| + | * '''''OsCHR4''''' was mainly expressed in the root mer- istem, flower, vascular bundle, and mesophyll cells by promoter::GUS analysis in transgenic rice. |
| − | source=RiceChromosome07
| + | ===Subcellular localization=== |
| − | preset=GeneLocation
| + | * Subcellular localization analysis revealed that OsCHR4::GFP fusion protein was targeted to the nuclei. |
| − | </gbrowseImage1>|
| + | |
| − | GSID = <gbrowseImage2>
| + | You can also add sub-section(s) at will. |
| − | name=NC_008400:19285640..19294050
| + | |
| − | source=RiceChromosome07
| + | ==Labs working on this gene== |
| − | preset=GeneLocation
| + | * State Key Laboratory of Plant Physiology and Biochemistry, College of Life Science, Zhejiang University, Hangzhou 310058, People’s Republic of China |
| − | </gbrowseImage2>| | + | |
| − | CDNA = <cdnaseq>gagatgggtcttggaaagactgtgtctgcctgtgcttttctatcatccctatgttgtgaatataagattaacttgccatgtcttgtcttggttcctctttctactatgcccaactggatggctgaatttgcatcatgggcacctcatttaaatgttgtggagtatcatggttctgcacgggcaagatctattattcgtcaatatgagtggcatgagggtgatgcaagccagatgggtaaaatcaagaaatctcataagttcaatgtattgctcactacttatgaaatggtgcttgttgatgctgcatatcttcggtctgtgtcatgggaggttcttatagtcgatgagggtcatcgtctgaagaattctagcagcaaacttttcagtttactcaatacattatcatttcagcatagagttttgctgactggaactccgttacagaataacattggtgaaatgtataacttattgaacttcttacaacctgcttctttcccttctctagcttcatttgaggagaaattcaatgaccttacaacaacagagaaagtggaggagctgaagaaccttgtagctccacatatgcttcgaagactgaaaaaggatgcaatgcaaaatatccctccaaagactgaacgaatggtgcctgttgaattgacatcaatccaggctgaatactaccgtgctatgcttacaaagaactaccaagtattgcgcaatattgggaaaggtggtgctcaccagtcattgttgaacatagtaatgcaacttcggaaagtctgcaatcatccgtatcttattcctggaactgaacctgaatcaggatcaccagagttcttgcatgaaatgcgaataaaggcctcagcaaagttaactttgttgcactctatgcttaaaatcctacacaaggatggtcatcgagttcttattttttctcagatgacaaagcttcttgacatccttgaagattacctgacttgggagtttggtccgaaaacatttgaaagagtggatggttcagtatctgtggcagaacgccaggcagcaattgctcgttttaatcaggacaagagtcgttttgtattcctgctatctacgcggtcatgtgggcttggaattaatttggcaactgcagatactgttatcatatatgattctgatttcaatccacatgctgatatacaggcaatgaacagagcacacagaattggacagtcaaacagacttttagtttacaggcttgtcgtgcgtgctagtgttgaggagcgtatcttgcaccttgcgaagaaaaaattgatgcttgatcaactttttgttaacaaatcagaatcacagaaggaagtggaagatatcattcgctggggaacagaggaactcttcaggaatagcgatgttgcagttaaagataataatgaagcttctggtgctaaaaatgatgtagcagaggttgagtttaagcataaaagaaaaactggtggactaggcgatgtttatgaagacagatgtgctgatggttctgctaaatttatttgggatgaaaatgctatcacaaagcttcttgacagatccaacgttccatcaacagtagctgaaagcactgatggggacttggacaatgatatgcttggcactgtaaagtcaatagattggaacgatgagctgaatgatgaccctggtgccaccgaggacatcccaaatattgataatgatggttgcgagcaggcatctgaagcaaagcaggatgcagctaatcgtgttgaagaaaatgaatgggataaactcttacgtgtcaggtgctgcactataccatatgggagcagtatcaaactgaggaggaagcatctcttggtcgaggtaagcgtttaa</cdnaseq>|
| + | ==References== |
| − | AA = <aaseq>EMGLGKTVSACAFLSSLCCEYKINLPCLVLVPLSTMPNWMAEFA SWAPHLNVVEYHGSARARSIIRQYEWHEGDASQMGKIKKSHKFNVLLTTYEMVLVDAA YLRSVSWEVLIVDEGHRLKNSSSKLFSLLNTLSFQHRVLLTGTPLQNNIGEMYNLLNF LQPASFPSLASFEEKFNDLTTTEKVEELKNLVAPHMLRRLKKDAMQNIPPKTERMVPV ELTSIQAEYYRAMLTKNYQVLRNIGKGGAHQSLLNIVMQLRKVCNHPYLIPGTEPESG SPEFLHEMRIKASAKLTLLHSMLKILHKDGHRVLIFSQMTKLLDILEDYLTWEFGPKT FERVDGSVSVAERQAAIARFNQDKSRFVFLLSTRSCGLGINLATADTVIIYDSDFNPH ADIQAMNRAHRIGQSNRLLVYRLVVRASVEERILHLAKKKLMLDQLFVNKSESQKEVE DIIRWGTEELFRNSDVAVKDNNEASGAKNDVAEVEFKHKRKTGGLGDVYEDRCADGSA KFIWDENAITKLLDRSNVPSTVAESTDGDLDNDMLGTVKSIDWNDELNDDPGATEDIP NIDNDGCEQASEAKQDAANRVEENEWDKLLRVRCCTIPYGSSIKLRRKHLLVEVSV</aaseq>|
| + | <references> |
| − | DNA = <dnaseqindica>2856..2911#1981..2152#1..1641#gagatgggtcttggaaagactgtgtctgcctgtgcttttctatcatccctatgttgtgaatataagattaacttgccatgtcttgtcttggttcctctttctactatgcccaactggatggctgaatttgcatcatgggcacctcatttaaatgttgtggagtatcatggttctgcacgggcaagatctattattcgtcaatatgagtggcatgagggtgatgcaagccagatgggtaaaatcaagaaatctcataagttcaatgtattgctcactacttatgaaatggtgcttgttgatgctgcatatcttcggtctgtgtcatgggaggttcttatagtcgatgagggtcatcgtctgaagaattctagcagcaaacttttcagtttactcaatacattatcatttcagcatagagttttgctgactggaactccgttacagaataacattggtgaaatgtataacttattgaacttcttacaacctgcttctttcccttctctagcttcatttgaggagaaattcaatgaccttacaacaacagagaaagtggaggagctgaagaaccttgtagctccacatatgcttcgaagactgaaaaaggatgcaatgcaaaatatccctccaaagactgaacgaatggtgcctgttgaattgacatcaatccaggctgaatactaccgtgctatgcttacaaagaactaccaagtattgcgcaatattgggaaaggtggtgctcaccagtcattgttgaacatagtaatgcaacttcggaaagtctgcaatcatccgtatcttattcctggaactgaacctgaatcaggatcaccagagttcttgcatgaaatgcgaataaaggcctcagcaaagttaactttgttgcactctatgcttaaaatcctacacaaggatggtcatcgagttcttattttttctcagatgacaaagcttcttgacatccttgaagattacctgacttgggagtttggtccgaaaacatttgaaagagtggatggttcagtatctgtggcagaacgccaggcagcaattgctcgttttaatcaggacaagagtcgttttgtattcctgctatctacgcggtcatgtgggcttggaattaatttggcaactgcagatactgttatcatatatgattctgatttcaatccacatgctgatatacaggcaatgaacagagcacacagaattggacagtcaaacagacttttagtttacaggcttgtcgtgcgtgctagtgttgaggagcgtatcttgcaccttgcgaagaaaaaattgatgcttgatcaactttttgttaacaaatcagaatcacagaaggaagtggaagatatcattcgctggggaacagaggaactcttcaggaatagcgatgttgcagttaaagataataatgaagcttctggtgctaaaaatgatgtagcagaggttgagtttaagcataaaagaaaaactggtggactaggcgatgtttatgaagacagatgtgctgatggttctgctaaatttatttgggatgaaaatgctatcacaaagcttcttgacagatccaacgttccatcaacagtagctgaaagcactgatggggacttggacaatgatatgcttggcactgtaaaggtaatttaatttgtgtaccttctttttaaataattgactactcatgcaatgaattgtgatatctagaatgccatcttgtctgtgtgtcaccaaaaaatagtgttttacttaaaggaagtttctaatcattttttctcaattaaactttttttgtttatgtccagttacagacaaatttctacactaatttagatctttaatttcttagaccacttttaaccattgcattttttttctgtatggtactgtccatcatattctgatgtatgttatactttgtgcaatcaataacttctctgtgtggttcttaattaattctcttttaaacccatttatcagtcaatagattggaacgatgagctgaatgatgaccctggtgccaccgaggacatcccaaatattgataatgatggttgcgagcaggcatctgaagcaaagcaggatgcagctaatcgtgttgaagaaaatgaatgggataaactcttacgtgtcaggtgctgcactataccatgtacttgttcttcctcttggcttatgatggtcttaatttataatttttttcttgtttacttcgtaactttacatgccagaaaataaacatgatggacgaataaatactccaagcctagaatttaagaaactgaataagttaagacacgccacatctcagcttatgaaatttcatttctcttagtcttttccagtggattcaaatttgtggtagcacaaatccctacttttgggaggcgcatgatgcactacttagagtcatgcgaaacaaatgtggacaagtgccttctgttcaccaaaacctcatctgacctttcaaaaatttccacagccaccatttcttgtttctacttaaacactaccatcattctttttctgatgtttaggtctttaggacatcgatccggctccaacacaaatgtttgatcattgtcttttttaatcatatattcataaaagatattgaaaatataaccacatgaaattattttcatgaaaaatctactcatatgagtcacatatcaaatcttaatatttttggatttattagcgagttaagatttcaaggtttgactgcagcacgccttctaaaacatcatctaatttagaacagatggagtagaaggtgaggccacgaaatgcaatcatagtagctttactggttgcagctaactctctctctctctctctctctctcatctcagatgggagcagtatcaaactgaggaggaagcatctcttggtcgaggtaagcgtttaaggaaggctgtttcttacagggaaacatttgcaaccattcctaatgaagctttaagcgaggtaattctgcattttgaccttgttctgcatttattttctgttgatcagttagcaatgctggttcataagttaatttactgtgttactaccttctgcataaaaaaatatgcttgcctaaatatcctgtaagggatctgttctcctagctaacgagcataaatttatctttgcatttttgtccaccgtggtccacttattgtggcatataattgctgcaaccctatgaacattgagctttgcaacttttgctttctctataagtgcataaactattcaaagtatgccttatgaggctctctgaatatatatatatatatatatatatatatatatatatatatatattgcaacattttgaatctgtaagtcaaaaattgtaccacaatccccacataactgaatttttcatgcgccattttgattttcttgatttgttcctctctgctattcactcatgcctattgaatactttccgtccaccacacagatggaaatctgaggtggcacttaacggatgccacaatagactattaataattgccaaatgacctactgttctctttacttggagtcatgatgagataatcacaattactcagcgataagccgcctccttgtgggcataaccagaggagagggggagaggagggggataagttcgccctggaaacctaggtggcggcacttccatcctaccacggatctgcgcttccctcctcccctttgcggcaccaccgcatcctcttccttgtccttcatcaccttctccacctcgtccctgtttcccagcaaagtactcttctactcccatctttcctctgctttatgctgatttgttcttctccctccatgcttccttcctatcttctttctggtgtgctgccgagccgccaccttcactactttaggcggcggcggcagctcgcttcctgctagtgcacctgcattagggtgagagggagagggtgctttaaatgggctattgtgctggggtttactgcgcaatactatagtgtgctgtgagtggcttaatgtaatttaggcccatatcttctctctctctctctctctcaaaattgtgtaatctgtacatctgatcacttaggctgaattgctgaaaggcaggggtgggtgctttgcattgccaccgtaacaacgatgagaatgctttcctaagtcctcataccctcacccctttacattttcatacacaggacaccaaacccttaacaacagacacaattcaaatgatttatgggagctctttgtagttttagtttgtgttaacatagttcaaaaaataattttgcaataaattactctttattatgggctctttgatgaattactactaaataatttcattttgtgggatttatcctatgtaattctacagacacatgataacatgtgaattcctgtgaccctgcaggactcacttttcttatttatgtacgattttggaaaatcggctagttagggctattcaagggggatatgattttggtagtgttgttctttagagcttgacaaagcatgttaatagctgtaatgttgaattgttatggcaaatgggaacgacagtctgagctgtgggcatcatatagctttaaaatcgagatagtgtgtgtgttcagtctaccactcatgttcacgttctcaaaatcaggctttccgttgaaaaaagtaaaaccaatgcctactttagtgtcttggagaatcaaatgaacagttgaaacttgcttatatttgaaagcttatgtgttccctgataattcagatatataccagagttccctgaatagtttaatctcccatgagtaatattgcgtgcattcaatataaatgtaatattcagagacttccgcagatatgttactgcagtgcagtttttaatttgctatttgccttgcactcttatattcacaatagttttgagtcatggtttcatgatttgctggcattggtataggactctgatgaggaggatgaaccaaagcgagaatacactgcagctggactggctttgaaggaaaaatagtatgctatctatccctttatctccctccctctccctcatgctaaggctggggattcctatacttactttcgcatgtgcccttatcatcaggcattgatttacttctgattgtaacagtgaaaaactccgagctagacaaaaggaaaggattgctcagcgccatgtgattaagaattatgctgatgacagacttgaagaattcatgaaactatatgattccagtgcaaatcccttgagaattgtagaagatcccaatcctgtgcagccatctggggctaaacgtctcggtgaatcaactgcagaaatgaagcaatcctcgaagaaaaccaagagatatcctgaaattcctcaagagctttatgccaagcttactggcaatgctgcttcatcaaaacatcacccaaaggcagcagatatctccaattcaggaactccacatcaccttttacctgttcttggcctttgtgctccaaatgctgatcagatgaactcatataaagggtcagtttgtgggccaagcacaaaggagcaaaaaagagctagtggtgaactagccaacaaaccgctgttgactcctgctgttgatcattctagcgaacaaaaacatgatggccaaccaactccttgtaagcctatgtttcctggttcctccgaggagactttgcgaaggctgaataatatcattccagacagttacttccccttccaacctgtatgtcctcttctttctttggtagcatattatttcatctagttgctttatcgttgttcatgctttttcttcaaaagtgaaaaatataagatagttgtccactttatacttattaggaggaaatggtgcaacctaccctgatattagtttttaaaatattttttatggatgcaaaattgggaaaaaaagaatccattcttgagtacagcatatatgatgttttatctagttaagagcatcattaaagaaaaagaatgacaaggtttttgtgtgcagattcctcctatatccgggaaggggattggtgatcatgtagaaaatcctgtatcgtccattccttcatttcaagggaaactgggtcttcctaattttagtctggaagacagtattccacttaagcatttgaagtcagtaccggatctatttcccaacttgtctttgggcactagcaatgaatatcttcgtaattgtgtcccagaattgccaaatagttcatttctaccaagctttatggcagatattgctggaacttcaaagcagaagaacaagttcatggcagatatgtctggccttcttccaggtttggcaatcaacccagttcaacaaatccattcgtccatgcctgaaaatcataagaaggtcttggacaaattaatgatgcgtgctcagtactcctcaagcaagttcttgaagaatgcctcaaataaattcctgaagaagagtttaaaaccagactattggtcagaagatgaactcgatgctttgtggattggggttcgcaggcatggaagaggaaattgggaggccatgcttagagatccaaagctgaagtttttgagccaccgatctcatgaagagctggcctcaagatggattttggaggagcagaaaattatagaggaaccaatgcctacagccaccagaagctccaactctacatcatttcctggcatatcggatgcaatgatgtctcgggcacttaatggaagtagcttttccaaactgaggatggagccgccaaagttgcagtcccacctaactgacattcagttaggttgcaatgatataccaaccagattttctcatgttgagcccactaattacatgaatttaagtgagggtggtccatcactgacaccgtggcaggatttcaaaaatagatcaggacacagtggagattttcctggcccacttgacaagtgggagaaacctgatatggggttgatcccaccatttatgccgaatccttttatgaaggaaagcattgggtcactgcccataaacagacacagcagtaattccattcagcagaatgaagttggatcaagttctcatgagagcatacttcatggtttttcggacggacaggccaaattattccatgagatgcaacggcgtgtgaagttagggaaattacccattgagatgaatctgaatcacacaaagctgtcagatcctctagctgagaactctggtgattttgaaagttcaaaaccgaacaagctaccgcactggcttcaggaggctgtgcgtgcacctccatccaagccacctgaatgtgagctaccagcaactgtttcagctattgctcagtctgtgtgcctactacttggagagcaaaaaccagcaatacctccattcccgattccaggacctcgtctctctctccccaaggacccaaggagtgctccaaagaagaggagagttcacaaagttcagcaagcttcctccctggtagatcattccaaaactacagttgggcaaggtgaccacaactctactccgtcagcaccactatccatggaagccgcacctgcctctcctgcagttattaaaagcagtgataccccctcgctcaacttgaactcaccatcttcatcatcagctggcagtcgggggcaggatgcgtcaaccccttccacttttgaagaaccagaaagaaccatggaagtttcagaacctgcttctgtcgctgctgccacttgcccgtccaggccagagcctcctgagactggtactcacagaatcgagttctccgcggtagatgacatggatactggatcttgtagatcacctgtgagggatactcctgaccctgacaatcagaagagcgaattgtctggatcaggtaatacacctactgaactttctgtattaccgttggttgatgcacctgggacgagcagcgaacctgctgtagtgcccgtatccagcgacgaggagtcaacccaagagggtgtaccaggcaaagccgtaagcaccggcgaccaggagaaacggacgccccctgatgagagcgaaaattcaggtgcggcaaatccagtttcggcagctcagacagctgacgaagataaggtggacgagatgatcacagatgagcattagaacttttgagcaatgagctcaaatgcttatttttcttccatttagcgctgggattttccctttcccaatggtttccagtgtgtggaggtatcaggtacctgccttttgtgtttgtatgcttagcccagaatccagatagagtaaaaatccagggactagtagtttagccctctagtccagcgggagcaaactctcgaaagcctctatatacatgaagtgtatattttcagacatggtaccttggacatggacaagtattcatttatttatgcgtgtatgatttagatagtccgtttaccaccc</dnaseqindica>|
| + | * <ref name="ref1"> |
| − | Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001066240.1 RefSeq:Os07g0497000]|
| + | Zhao C, Xu J, Chen Y, Mao C, Zhang S, Bai Y, Jiang D, Wu P. Molecular cloning |
| − | }}
| + | and characterization of OsCHR4, a rice chromatin-remodeling factor required for |
| − | [[Category:Genes]] | + | early chloroplast development in adaxial mesophyll. Planta. 2012 |
| − | [[Category:Japonica mRNA]]
| + | Oct;236(4):1165-76. Epub 2012 May 29. PubMed PMID: 22644768. |
| − | [[Category:Oryza Sativa Japonica Group]] | + | </ref> |
| − | [[Category:Japonica Genes]]
| + | |
| − | [[Category:Japonica Chromosome 7]] | + | </references> |
| − | [[Category:Chromosome 7]]
| + | |
| | + | ==Structured Information== |
| | + | [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 7]] |
