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| − | {{JaponicaGene|
| + | The rice '''''Os07g0669200''''' was reported as '''''OsObgC1''''' in 2012 <ref name="ref1" /> by researchers from Korea and Japan. |
| − | GeneName = Os07g0669200|
| |
| − | Description = GTP1/OBG subdomain containing protein|
| |
| − | Version = NM_001067121.1 GI:115473974 GeneID:4344232|
| |
| − | Length = 3133 bp|
| |
| − | Definition = Oryza sativa Japonica Group Os07g0669200, complete gene.|
| |
| − | Source = Oryza sativa Japonica Group
| |
| | | | |
| − | ORGANISM Oryza sativa Japonica Group
| + | ==Annotated Information== |
| − | Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
| + | [[File:176-Os07g0669200.png|right|thumb|327px|'''Figure 2.''' ''Phenotypes of obgc1 mutants.<ref name="ref1" />.'']] |
| − | Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
| + | ===Gene Symbol=== |
| − | clade; Ehrhartoideae; Oryzeae; Oryza.
| + | *'''''Os07g0669200''''' '''<=>''' '''''OsObgC''''' |
| − | |
| + | ===Function=== |
| − | Chromosome = [[:category:Japonica Chromosome 7|Chromosome 7]]|
| + | * '''''OsObgC''''' is required for leaf greening during rice growth |
| − | AP = Chromosome 7:28937704..28940836|
| + | ===Phenotypic analysis=== |
| − | CDS = 28937704..28939031,28939243..28939516,28939676..28939967,28940229..28940388,28940546..28940654<br>,28940741..28940836|
| + | * '''''OsObgC1''''' null mutants (obgc1-d1 and obgc1-t) exhibited no embryonic lethality but they did exhibit a severe chlorotic phenotype during early leaf development (Figure 2Ba,d), similar to that of the Arabidopsis AtObgC RNAi mutants. |
| − | GCID = <gbrowseImage1>
| + | * In addition, an OsObgC1 knockdown (obgc1-d2) mutant exhibited partially chlorotic phenotypes (Figure 2Bb,c). |
| − | name=NC_008400:28937704..28940836
| + | * However, when all the three obgc1 alleles were continually grown on MS medium containing sucrose they showed no recovery of a normal phenotype, unlike the AtObgC RNAi mutants. |
| − | source=RiceChromosome07
| + | |
| − | preset=GeneLocation
| + | You can also add sub-section(s) at will. |
| − | </gbrowseImage1>|
| + | |
| − | GSID = <gbrowseImage2>
| + | ==Labs working on this gene== |
| − | name=NC_008400:28937704..28940836
| + | * Swine Science and Technology Center, Gyeongnam National University of Science and Technology (GNTECH), Jinju 660-758, Korea |
| − | source=RiceChromosome07
| + | * Division of Applied Life Sciences (BK21), Graduate School of Gyeongsang National University, Jinju 660-701, Korea |
| − | preset=GeneLocation
| + | * Division of Electron Microscopic Research, Korea Basic Science Institute, 52 Eoeun-dong, Daejeon 305-333, Korea |
| − | </gbrowseImage2>| | + | * Graduate School of Human and Environmental Sciences, Kyoto Prefectural University, Shimogamo, Sakyo-ku, Kyoto 606-8522,Japan |
| − | CDNA = <cdnaseq>atggcgccggccgtcgccgtcgtcgccgccgccgccgccttccccttccgcctcttctccgccgaggctcgccgaaacaccaagggctcccggagcaagcgaggctcagccaggcccctcaagccatcccctcctccccgcccatccgcgtcgtcgtccgccgctggcggcggcggcgccaccaccttcaccaggctgccgctccgcaacgcccccgcgtccgtggaggtgacgctggaccgcttccccaccgccaatcccgagcccagagcttccacttttactcgccggaatggcgagcggttgggcgacgacgaggaggatgaggaggaggaggaggatgaggtggagctcggactccgtggggccaccacgtttgctcggctccctctgcgggactcgccggacggcggtgacctcaccattgggcatttcgacgcgggggtggcccctcaggagggcctgaggagtcgcgccatttctcgtcaattggtcgaacaccttgacgacgtagaggaggaggaggaggagcaggttgtcagccgcttggacatcttcgagggagcaaagggcagggaagctcgggctttcttacccgacgaggacgacgaggacgacgacgtcgtggtgttcgacccagagtacgacggctacagcgacgacgaggagttcgtcgctactgctgtcgagcagagtccacgaggcgacgccatcgcagttgcggagcttgaaaagctcaaatacgacaatgacgacgacgacgacgacgacgacgaggttgtcgtgttccacccagacgacgacgaggaagtcgacgtgttcgaggactacgacgacgacgaggaggaggagacgaaggagaagggtgtccccgccgtgatgcggtgcttcgacacggcgaagatatacgccaaggccggcgacggcgggaacggcgtggtggcattccggcgagagaagtacgtgccgctgggagggccctcgggcggcgacggcggccgcggcgggaacgtgttcgtggaggtggacggcgacatgaactcgctgctgccgttccgcaagtcggtgcacttccgcgccggccgcggcgcgcacggccagggcaggcagcaggccggagccaagggcgacgacgtcgtcgtgaaggtgccgccggggacggtggtgcggtccgccgccggcgacgtggagctgctcgagctgatgaggcccgggcagcgcgcgctgcttctccccggcggccgcggcggccgcggcaatgccgcattcaagtccggcacaaataaggcgccaaggattgcagagaaaggggagaaaggtccagaaatgtggatagatttggagctgaagctggttgctgatgtggggattgtaggcgccccaaatgctggaaagagcacccttctgactgctattagtgcagcaaagccaactatagccaattacccttttacgacattattaccaaatcttggagtggtctcattggattttgatgctacaatggtagtcgcagaccttcctggattgctggaaggtgctcaccgtggatatggcttggggcatgagtttttaaggcatagtgagagatgttcagtgttggttcatgttgtcgacggctcaggagaacaacctgaatatgagtttgaggctgttcgtttagaactggagctatttagcccatcattggttgacaaaccttatatagtggtgtacaataagatggatcttccagaggcatcggaaagatggaataagtttcaggagaagctacaggctgaaggaattgagccctattgcatcagtgcaatgaataggcaaggaacagaggatgttgttcttgctgcatacaaggttctacagaaagataggcaaagaatgaaagatgacgaagaatggaatggccctgaaaatctgaatcatgtggctgatgcaataaaaagggaaaggagagctcccatgaacgaatttgagatttttcatgataagggcacgaatacatggaacgttgttggagctggaattgaacgttttgttcagatgactaattggcagtattcagaatccttgaaacgatttcagcatgctttagaggcatgtggtgtcaacaaaactctaatcaaacgtggagttaaagagggagacacggtagttgttggtgagatggaaatggtttggacagatgagcctagtaagaccaggtcatcaaagacaatgaactcaaaagatgactctgtcagatggcctgaatttggctag</cdnaseq>|
| + | |
| − | AA = <aaseq>MAPAVAVVAAAAAFPFRLFSAEARRNTKGSRSKRGSARPLKPSP PPRPSASSSAAGGGGATTFTRLPLRNAPASVEVTLDRFPTANPEPRASTFTRRNGERL GDDEEDEEEEEDEVELGLRGATTFARLPLRDSPDGGDLTIGHFDAGVAPQEGLRSRAI SRQLVEHLDDVEEEEEEQVVSRLDIFEGAKGREARAFLPDEDDEDDDVVVFDPEYDGY SDDEEFVATAVEQSPRGDAIAVAELEKLKYDNDDDDDDDDEVVVFHPDDDEEVDVFED YDDDEEEETKEKGVPAVMRCFDTAKIYAKAGDGGNGVVAFRREKYVPLGGPSGGDGGR GGNVFVEVDGDMNSLLPFRKSVHFRAGRGAHGQGRQQAGAKGDDVVVKVPPGTVVRSA AGDVELLELMRPGQRALLLPGGRGGRGNAAFKSGTNKAPRIAEKGEKGPEMWIDLELK LVADVGIVGAPNAGKSTLLTAISAAKPTIANYPFTTLLPNLGVVSLDFDATMVVADLP GLLEGAHRGYGLGHEFLRHSERCSVLVHVVDGSGEQPEYEFEAVRLELELFSPSLVDK PYIVVYNKMDLPEASERWNKFQEKLQAEGIEPYCISAMNRQGTEDVVLAAYKVLQKDR QRMKDDEEWNGPENLNHVADAIKRERRAPMNEFEIFHDKGTNTWNVVGAGIERFVQMT NWQYSESLKRFQHALEACGVNKTLIKRGVKEGDTVVVGEMEMVWTDEPSKTRSSKTMN SKDDSVRWPEFG</aaseq>|
| + | ==References== |
| − | DNA = <dnaseqindica>1..1328#1540..1813#1973..2264#2526..2685#2843..2951#3038..3133#atggcgccggccgtcgccgtcgtcgccgccgccgccgccttccccttccgcctcttctccgccgaggctcgccgaaacaccaagggctcccggagcaagcgaggctcagccaggcccctcaagccatcccctcctccccgcccatccgcgtcgtcgtccgccgctggcggcggcggcgccaccaccttcaccaggctgccgctccgcaacgcccccgcgtccgtggaggtgacgctggaccgcttccccaccgccaatcccgagcccagagcttccacttttactcgccggaatggcgagcggttgggcgacgacgaggaggatgaggaggaggaggaggatgaggtggagctcggactccgtggggccaccacgtttgctcggctccctctgcgggactcgccggacggcggtgacctcaccattgggcatttcgacgcgggggtggcccctcaggagggcctgaggagtcgcgccatttctcgtcaattggtcgaacaccttgacgacgtagaggaggaggaggaggagcaggttgtcagccgcttggacatcttcgagggagcaaagggcagggaagctcgggctttcttacccgacgaggacgacgaggacgacgacgtcgtggtgttcgacccagagtacgacggctacagcgacgacgaggagttcgtcgctactgctgtcgagcagagtccacgaggcgacgccatcgcagttgcggagcttgaaaagctcaaatacgacaatgacgacgacgacgacgacgacgacgaggttgtcgtgttccacccagacgacgacgaggaagtcgacgtgttcgaggactacgacgacgacgaggaggaggagacgaaggagaagggtgtccccgccgtgatgcggtgcttcgacacggcgaagatatacgccaaggccggcgacggcgggaacggcgtggtggcattccggcgagagaagtacgtgccgctgggagggccctcgggcggcgacggcggccgcggcgggaacgtgttcgtggaggtggacggcgacatgaactcgctgctgccgttccgcaagtcggtgcacttccgcgccggccgcggcgcgcacggccagggcaggcagcaggccggagccaagggcgacgacgtcgtcgtgaaggtgccgccggggacggtggtgcggtccgccgccggcgacgtggagctgctcgagctgatgaggcccgggcagcgcgcgctgcttctccccggcggccgcggcggccgcggcaatgccgcattcaagtccggcacaaataaggcgccaaggattgcagagaaaggggagaaaggtccagaaatgtatgctctcttcttcactccattgaaaagattgttcatgctttttttttttagttagctatggagtgagcttttgacatgatttcccatgttaaattagccatttagcttacacaaatgttagttcaggtttagattgtattgcttgatatacaagttttctttctttgacttacattagctgcattttgggatgattggtggttgttaggtggatagatttggagctgaagctggttgctgatgtggggattgtaggcgccccaaatgctggaaagagcacccttctgactgctattagtgcagcaaagccaactatagccaattacccttttacgacattattaccaaatcttggagtggtctcattggattttgatgctacaatggtagtcgcagaccttcctggattgctggaaggtgctcaccgtggatatggcttggggcatgagtttttaaggcatagtgagagatgttcagtgttggtatgttccttctctctttctctcctttctttaggatctactatgttttaagtccacatctcttatgtcatggttatcttatttctcctcgaatatatgatattagaaatgtatgtgcgatttattggttattgtttatttttctggtttgggtcttaggttcatgttgtcgacggctcaggagaacaacctgaatatgagtttgaggctgttcgtttagaactggagctatttagcccatcattggttgacaaaccttatatagtggtgtacaataagatggatcttccagaggcatcggaaagatggaataagtttcaggagaagctacaggctgaaggaattgagccctattgcatcagtgcaatgaataggcaaggaacagaggatgttgttcttgctgcatacaaggttctacagaaagataggcaaagaatgaaagatgacgaaggtatttctatagcctaaatttttctgtcaaattatagtgtactagtagctaataactgcctaactggtgctcaagcatggaagtgcactttaactgactatagctgttcgcaattttagattaaatgcatatgtgctactttcaccatctatgctaaagtagtgttcttactagcattcgttttacattatcgtggttaacacttacgcataacatttttgcgttttaagatgtttatcttactactgcatgtttctgcagaatggaatggccctgaaaatctgaatcatgtggctgatgcaataaaaagggaaaggagagctcccatgaacgaatttgagatttttcatgataagggcacgaatacatggaacgttgttggagctggaattgaacgttttgttcagatgactaattggcagtaagtagtttctttgtacagtgctcactcgttacactttggaagatcagtctcagaaagcgattttaagactgcattactggtcgtttatctaaattgacctcttttaagattactaattaagtaattgtaatatctgatctctttccaaatgcaggtattcagaatccttgaaacgatttcagcatgctttagaggcatgtggtgtcaacaaaactctaatcaaacgtggagttaaagagggagacacggtagttgttggtgaggtatatattcctatgtcataaacaaaacattggacagtcatcacacaaataaaattatcagatttctaagttaataatttctgcagatggaaatggtttggacagatgagcctagtaagaccaggtcatcaaagacaatgaactcaaaagatgactctgtcagatggcctgaatttggctag</dnaseqindica>|
| + | <references> |
| − | Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001067121.1 RefSeq:Os07g0669200]|
| + | * <ref name="ref1"> |
| − | }}
| + | Hu Y, Liu D, Zhong X, Zhang C, Zhang Q, Zhou DX. CHD3 protein recognizes and |
| − | [[Category:Genes]] | + | regulates methylated histone H3 lysines 4 and 27 over a subset of targets in the |
| − | [[Category:Japonica mRNA]]
| + | rice genome. Proc Natl Acad Sci U S A. 2012 Apr 10;109(15):5773-8. doi: |
| − | [[Category:Oryza Sativa Japonica Group]] | + | 10.1073/pnas.1203148109. Epub 2012 Mar 26. PubMed PMID: 22451926; PubMed Central |
| − | [[Category:Japonica Genes]] | + | PMCID: PMC3326492. |
| − | [[Category:Japonica Chromosome 7]]
| + | </ref> |
| − | [[Category:Chromosome 7]]
| + | </references> |
| | + | |
| | + | ==Structured Information== |
| | + | [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 7]] |
