Difference between revisions of "Os09g0547500"

From RiceWiki
Jump to: navigation, search
 
(5 intermediate revisions by 2 users not shown)
Line 1: Line 1:
Please input one-sentence summary here.
+
The rice '''''Os09g0547500''''' was reported as '''''OsLDC-like 1''''' in 2012 <ref name="ref1" /> by researchers from Korea.  
  
 
==Annotated Information==
 
==Annotated Information==
 +
===Gene Symbol===
 +
*'''''Os09g0547500''''' '''<=>''' '''''OsLDC-like 1,ABCC1,OsMRP1,MRP1'''''
 
===Function===
 
===Function===
Please input function information here.
+
* The rice '''''OsLDC-like 1''''' encodes a lysine decarboxylase-like protein.
  
===Expression===
+
===Phenotypic analysis===
Please input expression information here.
+
* The mutant line exhibited enhanced accumulation of the polyamines (PAs) putrescine, spermidine, and spermine under conditions of oxidative stress.  
 
+
* The generation of reactive oxygen species (ROS) in the mutant line was assessed by qRT-PCR analysis of NADPH oxidase (RbohD and RbohF), and by DCFH-DA staining.
===Evolution===
+
* Cellular levels of ROS in osldc-like 1 leaves were significantly lower than those in the wild-type (WT) rice after exposure to oxidative, high salt and acid stresses. Exogenously-applied PAs such as spermidine and spermine significantly inhibited the stress-induced accumulation of ROS and cell damage in WT leaves.
Please input evolution information here.
+
* Additionally, the activities of ROS-detoxifying enzymes were increased in the homozygous mutant line in the presence or absence of H2O2.
 +
* Thus, mutation of OsLDC-like 1 conferred an oxidative stress-tolerant phenotype.
  
 
You can also add sub-section(s) at will.
 
You can also add sub-section(s) at will.
  
 
==Labs working on this gene==
 
==Labs working on this gene==
Please input related labs here.
+
* Department of Biology, Sunchon National University, Sunchon 540-742, Korea
 +
* Crop Biotech Institute Center, Department of Plant Systems Biotech, Kyung Hee University, Yongin 446-701, Korea
 +
==References==
 +
<references>
 +
* <ref name="ref1">
 +
Jang, Su Jin, et al. "Increased polyamine biosynthesis enhances stress tolerance by preventing the accumulation of reactive oxygen species: T-DNA mutational analysis of Oryza sativa lysine decarboxylase-like protein 1." Molecules and cells 34.3 (2012): 251-262.
 +
</ref>
 +
 
 +
</references>
  
==References==
 
Please input cited references here.
 
  
 
==Structured Information==
 
==Structured Information==
{{JaponicaGene|
+
[[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 9]]
GeneName = Os09g0547500|
 
Description = Similar to Lysine decarboxylase-like protein|
 
Version = NM_001070385.1 GI:115480512 GeneID:4347769|
 
Length = 2002 bp|
 
Definition = Oryza sativa Japonica Group Os09g0547500, complete gene.|
 
Source = Oryza sativa Japonica Group
 
 
 
  ORGANISM  Oryza sativa Japonica Group
 
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
 
            Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
 
            clade; Ehrhartoideae; Oryzeae; Oryza.
 
|
 
Chromosome = [[:category:Japonica Chromosome 9|Chromosome 9]]|
 
AP = Chromosome 9:22474370..22476371|
 
CDS = 22474444..22474591,22474725..22474822,22474943..22474973,22475081..22475395,22475974..22476134<br>|
 
GCID = <gbrowseImage1>
 
name=NC_008402:22474370..22476371
 
source=RiceChromosome09
 
preset=GeneLocation
 
</gbrowseImage1>|
 
GSID = <gbrowseImage2>
 
name=NC_008402:22474370..22476371
 
source=RiceChromosome09
 
preset=GeneLocation
 
</gbrowseImage2>|
 
CDNA = <cdnaseq>tcgatcgatggaagaggcggcggcggcagcggacatgaacggcggcgtgcatcagtcccggttccggcgggtttgcgtgttctgcgggagcagctccggcaagcggcgcagctaccgcgacgccgccgtcgagctcggcaaggagctggtggcgaggaaggtggatttggtgtacggaggaggcagcctgggtctcatgggggaggtcgccgaggccgtgcgcaacggcggcggccacgtcattggcgtcatacctaccactctgatgggcaaggaggtaacgggagagacggtgggggaggtgcgggaggtggggagcatgcacgagaggaaggcggagatggcgaggaggtcggacgcgttcgtggcgctgccgggagggtacgggacgctggaggaggtggtggaggtgatcgcgtgggcgcagctgggcatccacgccaagcccgtcggcctcctcaacgtcgacggctactacgacttcctcctcgccttcgtcgacaaggccgtcgccgacggcttcatccccccttcccaccgccacctcttcgtctccgcccccgacgccccctccctcgtccacaagctcgaggagtacgtgccggtgtagcaggagggcgacccggagacgcccaagctgcgttgggagatcgagcagcaggcagccgtccaggtcgtcggctacagctcctcgctccacgcccagctagctattgcagattaatctctcgatctgaattacttagtaattaa</cdnaseq>|
 
AA = <aaseq>SIDGRGGGGSGHERRRASVPVPAGLRVLREQLRQAAQLPRRRRR                    ARQGAGGEEGGFGVRRRQPGSHGGGRRGRAQRRRPRHWRHTYHSDGQGGNGRDGGGGA                    GGGEHAREEGGDGEEVGRVRGAAGRVRDAGGGGGGDRVGAAGHPRQARRPPQRRRLLR                    LPPRLRRQGRRRRLHPPFPPPPLRLRPRRPLPRPQARGVRAGVAGGRPGDAQAALGDR                    AAGSRPGRRLQLLAPRPASYCRLISRSELLSN</aaseq>|
 
DNA = <dnaseqindica>75..222#356..453#574..604#712..1026#1605..1765#atgtacatctcctctccacacacttcacacttcacctcgatcgatcgatcgcccgcagtagttagcgagagtgatcgatcgatggaagaggcggcggcggcagcggacatgaacggcggcgtgcatcagtcccggttccggcgggtttgcgtgttctgcgggagcagctccggcaagcggcgcagctaccgcgacgccgccgtcgagctcggcaaggagctggtatatatgcgtgattaattaatttctctccatgttgatcatgattaattcatgcattcgatcgagctcgatcaatcagctctagttaactagctaattaattaactgattaagacgatgaattaactggtaggtggcgaggaaggtggatttggtgtacggaggaggcagcctgggtctcatgggggaggtcgccgaggccgtgcgcaacggcggcggccacgtcattgggtccgtacacataggcaccccctctcttcgttctcctcgtgttgcctagctagctcgtactctgtctgttcaatgatcaatccggcaatgtttaatcaatttctttcttgatgcatgcagcgtcatacctaccactctgatgggcaaggaggtaaagaattgatttcaacagctcattaatttcagtcatatatattgactagctaataattaattaaggtaatcaaatggtagaaattaatgatgaggtacgtgtaggtaacgggagagacggtgggggaggtgcgggaggtggggagcatgcacgagaggaaggcggagatggcgaggaggtcggacgcgttcgtggcgctgccgggagggtacgggacgctggaggaggtggtggaggtgatcgcgtgggcgcagctgggcatccacgccaagcccgtcggcctcctcaacgtcgacggctactacgacttcctcctcgccttcgtcgacaaggccgtcgccgacggcttcatccccccttcccaccgccacctcttcgtctccgcccccgacgccccctccctcgtccacaagctcgaggtatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatacaggcttagcaatcttaaaattgtgatttttgtcgcggggataaaaaaacccgaaatatctggaatttcgatatttttttggctgacccttttttaagaattttgatgaattttgaatgaatttgaataaactttaatcaaattaaaaaaactgaaatttctgacgtgatatgtgcttgccggtaggggggcgaagttaccaaaaaattcaattaccatacacatctccatccatcaatcatcatcatcttcttcttctgcatcgatcgtatagtcgtaggccagtcgagagtattctcagtacagtcgtattattttgatgtaattggctatttgtggactctcgtatgctttctcgatagatatatctgtccttcgattccctggacaacacggcggcgatcggtccactgacctgatccgctagctatagctagttactgtttccaagctgagctgattcaaacatgaccagtgttttgacttgttttgtgcttgcaggagtacgtgccggtgtagcaggagggcgacccggagacgcccaagctgcgttgggagatcgagcagcaggcagccgtccaggtcgtcggctacagctcctcgctccacgcccagctagctattgcagattaatctctcgatctgaattacttagtaattaatctggttgactaagtagatcatcaacgagaggatgcagaggaggaacaggtacctagtacgtacttacgaattctaaaaaaaaaggtactctgtactcctcaattatctgcctttagctagtgtattatgtacgtgctctggttattgcttattgttagctggtctggctgcatgtactctatatatatatgatgcagttctgtacatatacatcgatcgatcgagcgtgtcgcttt</dnaseqindica>|
 
Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001070385.1 RefSeq:Os09g0547500]|
 
}}
 
[[Category:Genes]]
 
[[Category:Japonica mRNA]]
 
[[Category:Oryza Sativa Japonica Group]]
 
[[Category:Japonica Genes]]
 
[[Category:Japonica Chromosome 9]]
 
[[Category:Chromosome 9]]
 

Latest revision as of 14:16, 22 October 2016

The rice Os09g0547500 was reported as OsLDC-like 1 in 2012 [1] by researchers from Korea.

Annotated Information

Gene Symbol

  • Os09g0547500 <=> OsLDC-like 1,ABCC1,OsMRP1,MRP1

Function

  • The rice OsLDC-like 1 encodes a lysine decarboxylase-like protein.

Phenotypic analysis

  • The mutant line exhibited enhanced accumulation of the polyamines (PAs) putrescine, spermidine, and spermine under conditions of oxidative stress.
  • The generation of reactive oxygen species (ROS) in the mutant line was assessed by qRT-PCR analysis of NADPH oxidase (RbohD and RbohF), and by DCFH-DA staining.
  • Cellular levels of ROS in osldc-like 1 leaves were significantly lower than those in the wild-type (WT) rice after exposure to oxidative, high salt and acid stresses. Exogenously-applied PAs such as spermidine and spermine significantly inhibited the stress-induced accumulation of ROS and cell damage in WT leaves.
  • Additionally, the activities of ROS-detoxifying enzymes were increased in the homozygous mutant line in the presence or absence of H2O2.
  • Thus, mutation of OsLDC-like 1 conferred an oxidative stress-tolerant phenotype.

You can also add sub-section(s) at will.

Labs working on this gene

  • Department of Biology, Sunchon National University, Sunchon 540-742, Korea
  • Crop Biotech Institute Center, Department of Plant Systems Biotech, Kyung Hee University, Yongin 446-701, Korea

References

  1. Jang, Su Jin, et al. "Increased polyamine biosynthesis enhances stress tolerance by preventing the accumulation of reactive oxygen species: T-DNA mutational analysis of Oryza sativa lysine decarboxylase-like protein 1." Molecules and cells 34.3 (2012): 251-262.


Structured Information