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| − | Please input one-sentence summary here.
| + | The rice '''''Os05g0144400''''' was reported as '''''OsPPKL2''''' in 2012 <ref name="ref1" /> by researchers from China. |
| | | | |
| | ==Annotated Information== | | ==Annotated Information== |
| | + | ===Gene Symbol=== |
| | + | *'''''Os05g0144400''''' '''''<=>''''' '''''OsPPKL2''''' |
| | ===Function=== | | ===Function=== |
| − | Please input function information here.
| + | * * '''''OsPPKL2''''' encodes a putative protein phosphatase with Kelch-like repeat domain. |
| − | | + | * Transgenic studies showed that '''''OsPPKL2''''' function as a positive regulator of grain length in Rice. |
| − | ===Expression===
| |
| − | Please input expression information here.
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| − | | |
| − | ===Evolution===
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| − | Please input evolution information here.
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| | | | |
| | You can also add sub-section(s) at will. | | You can also add sub-section(s) at will. |
| | | | |
| | ==Labs working on this gene== | | ==Labs working on this gene== |
| − | Please input related labs here.
| + | * State Key Laboratory of Crop Genetics and Germplasm Enhancement, Nanjing Agricultural University, Nanjing 210095, China; |
| | + | * Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Nanjing 210014, China; |
| | + | * State Key Laboratory of Rice Biology, China National Rice Research Institute, Hangzhou 310006, China; |
| | + | * State Key Laboratory of Plant Genomics and National Center for Plant Gene Research, Institute of Genetics and Developmental Biology, |
| | + | Chinese Academy of Sciences, Beijing 100101, China |
| | | | |
| | ==References== | | ==References== |
| − | Please input cited references here.
| + | <references> |
| | + | * <ref name="ref1"> |
| | + | Zhang X, Wang J, Huang J, Lan H, Wang C, Yin C, Wu Y, Tang H, Qian Q, Li J, |
| | + | Zhang H. Rare allele of OsPPKL1 associated with grain length causes extra-large |
| | + | grain and a significant yield increase in rice. Proc Natl Acad Sci U S A. 2012 |
| | + | Dec 26;109(52):21534-9. doi: 10.1073/pnas.1219776110. PubMed PMID: 23236132; |
| | + | PubMed Central PMCID: PMC3535600. |
| | + | </ref> |
| | + | </references> |
| | | | |
| | ==Structured Information== | | ==Structured Information== |
| − | {{JaponicaGene|
| + | [[Category:Genes]][[Category:Oryza Sativa Japonica Group]][[Category:Japonica Chromosome 5]] |
| − | GeneName = Os05g0144400|
| |
| − | Description = Serine/threonine protein phosphatase, BSU1 family protein|
| |
| − | Version = NM_001061160.1 GI:115462050 GeneID:4337785|
| |
| − | Length = 8869 bp|
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| − | Definition = Oryza sativa Japonica Group Os05g0144400, complete gene.|
| |
| − | Source = Oryza sativa Japonica Group
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| − | | |
| − | ORGANISM Oryza sativa Japonica Group
| |
| − | Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
| |
| − | Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
| |
| − | clade; Ehrhartoideae; Oryzeae; Oryza.
| |
| − | |
| |
| − | Chromosome = [[:category:Japonica Chromosome 5|Chromosome 5]]|
| |
| − | AP = Chromosome 5:2542267..2551135|
| |
| − | CDS = 2542406..2542619,2542759..2542819,2543134..2543212,2543304..2543383,2543489..2543583<br>,2544191..2544290,2545090..2545159,2546100..2546201,2546415..2546496<br>,2546580..2546747,2547284..2547425,2547529..2547757,2548404..2548574<br>,2548643..2548881,2549043..2549127,2549221..2549319,2549397..2549596<br>,2549675..2549750,2549906..2550041,2550119..2550258,2550442..2550525<br>|
| |
| − | GCID = <gbrowseImage1>
| |
| − | name=NC_008398:2542267..2551135
| |
| − | source=RiceChromosome05
| |
| − | preset=GeneLocation
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| − | </gbrowseImage1>|
| |
| − | GSID = <gbrowseImage2>
| |
| − | name=NC_008398:2542267..2551135
| |
| − | source=RiceChromosome05
| |
| − | preset=GeneLocation
| |
| − | </gbrowseImage2>|
| |
| − | CDNA = <cdnaseq>atggggacggcggggaagggggcgtgggtggtgccggcgccggcgtacagggaggtggaagggtgggagggggcgggggacgactcgccggggttcaggtgcggccactcgctgacggtggtcgcgcccaccaaggggcacggcccgcggctcatcctcttcggcggcgccaccgccatcgaggccggcgcatcctcaggcatgccgggcatcaggctcgcgggggtgacgaactcggtgcactcgtatgatgtggacacgcgcaggtggacgagattgcatccagctggagagcctccatcgccgagggctgcacatgctgcagctgccgtaggaacgatggttgttttccagggtggtattggaccagcggggcactcgacagatgatctctatgttcttgacctgacaaacgacaagtttaaatggcacagggttgttgttcagggggctgggcctggtcctcgctatggtcactgtatggatctggtagcccaacgttatcttgtaactgtctctggaaatgatggaaagcgagtcttatcggatgcttgggctctggacacagcacagaaaccatataggtggcagaaacttaaccctgatggcgatagaccttcagcgagaatgtatgctactgccagtgcacgcaccgatggcatgcttttactttgcggtggaagggatgcttctgggatgccactttctgatgcttatggactactaatgcatacaagtggccagtgggagtggacactagctccaggggtatctccatctccaagatatcagcatgcagctgtctttgttggtgctcggttgcatgttactggtggagtccttagaggagggagagccattgagggagagggtgcaatagcagttctggacactgctgctggagtttggttggatagaaatggcattgtgacctctcgcacattgaagtcttcacatgaccatgatgcttcttcggatctacttcgccgttgtcgtcatgcagctgcttctgttggaacgcagatatacatttatggtggtctgaggggagatattctcctcgacgattttcttgttgctgataatgcacctatccaatcagaatttacttcatctatgtacgacagagtcccaagggcagaaaatcaaaatagaaaccacaattttaattcagattctcccactacaaataacagcacggacaagaagtccattgacatgttgacacaggcttcagctgccgaagctgaagctgttagtgctgtatggcgtgctgcacaggaagcatctcatgcatcttcagaagatagcctgtcagagggaataggatctgagtccccactcagtgaaacttcaccgatgcctgaggatttagacgatggaggctccctagaaccagatgtgaagctgcattcaagagcggttgtagtttctaaagaagcagtaggagatttgggatgtttggtccgacagctttcattggaccaatttgagaatgaaagcagaagaatgcatccctcaagcaatgatcaatcatatccagccaagaaagcattaaacagacaaaggtccccacaaggtttgcataagaaggttatttcgttcttacttaagccaaggaattggagggctcccgctgaaagggcttttttccttgattcatacgaagttggcgagctatgttatgctgctgagcagatttttatgcaggagccaactgttttacaattaaaagcaccaattaaagtatttggtgatcttcatgggcagtttggggacctaatgcgcctttttgatgaatatggttatccatcaactgctggtgatataacgtatattgattatctcttcttgggagactatgttgaccgaggtcagcacagcttggaaacaataacattgcttcttgctcttaaaatagagtaccctgaaaacgtccacttgattaggggaaatcacgaggctgctgacatcaatgcactttttgggttccgccttgaatgcatagagagaatgggtgaaagtgatggcatatgggcttggacaagattcaatcaactgtttaattatctcccacttgctgccatgatagaaaagaaaataatttgcatgcatggtggcattggaaggtcaataaacactatcgagcaaatcgagaaacttgaacggcctatcacaatggatgttggatctattattctcatggaccttttatggtccgatcctacagaaaatgatagtgtggagggtttgagaccaaatgcacgagggcctggcttggtgacatttgggcctgatcgagtgactgaattctgtaaacgaaacagattgcaactaatcataagagctcatgagtgtgttatggatgggtttgagcgttttgctcatgggcaattgataactttattttcagccactaactattgtggtactgcaaacaacgctggggccatacttgtggtgggcaggggactagttattgttccaaagttaattcatccacttcctccaccagttaattctccagagtcttccccagaacgtgccatggacgccacatggatgcaggaacttaacatacaacggccacctacaccaactagaggacggccacagtctgctagtgacagaaattctcttgcttatatatga</cdnaseq>|
| |
| − | AA = <aaseq>MGTAGKGAWVVPAPAYREVEGWEGAGDDSPGFRCGHSLTVVAPT KGHGPRLILFGGATAIEAGASSGMPGIRLAGVTNSVHSYDVDTRRWTRLHPAGEPPSP RAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGAGPGPRYGHC MDLVAQRYLVTVSGNDGKRVLSDAWALDTAQKPYRWQKLNPDGDRPSARMYATASART DGMLLLCGGRDASGMPLSDAYGLLMHTSGQWEWTLAPGVSPSPRYQHAAVFVGARLHV TGGVLRGGRAIEGEGAIAVLDTAAGVWLDRNGIVTSRTLKSSHDHDASSDLLRRCRHA AASVGTQIYIYGGLRGDILLDDFLVADNAPIQSEFTSSMYDRVPRAENQNRNHNFNSD SPTTNNSTDKKSIDMLTQASAAEAEAVSAVWRAAQEASHASSEDSLSEGIGSESPLSE TSPMPEDLDDGGSLEPDVKLHSRAVVVSKEAVGDLGCLVRQLSLDQFENESRRMHPSS NDQSYPAKKALNRQRSPQGLHKKVISFLLKPRNWRAPAERAFFLDSYEVGELCYAAEQ IFMQEPTVLQLKAPIKVFGDLHGQFGDLMRLFDEYGYPSTAGDITYIDYLFLGDYVDR GQHSLETITLLLALKIEYPENVHLIRGNHEAADINALFGFRLECIERMGESDGIWAWT RFNQLFNYLPLAAMIEKKIICMHGGIGRSINTIEQIEKLERPITMDVGSIILMDLLWS DPTENDSVEGLRPNARGPGLVTFGPDRVTEFCKRNRLQLIIRAHECVMDGFERFAHGQ LITLFSATNYCGTANNAGAILVVGRGLVIVPKLIHPLPPPVNSPESSPERAMDATWMQ ELNIQRPPTPTRGRPQSASDRNSLAYI</aaseq>|
| |
| − | DNA = <dnaseqindica>140..353#493..553#868..946#1038..1117#1223..1317#1925..2024#2824..2893#3834..3935#4149..4230#4314..4481#5018..5159#5263..5491#6138..6308#6377..6615#6777..6861#6955..7053#7131..7330#7409..7484#7640..7775#7853..7992#8176..8259#agtgccgtgtgctgtgtgcgtgtgtgtgtctctctctctttggttactaccgcctcggatcccaagctgctgcggcggcggtggcggcggcggggagctagggttttggaggtggggggaggaggtggaggaggaggggatggggacggcggggaagggggcgtgggtggtgccggcgccggcgtacagggaggtggaagggtgggagggggcgggggacgactcgccggggttcaggtgcggccactcgctgacggtggtcgcgcccaccaaggggcacggcccgcggctcatcctcttcggcggcgccaccgccatcgaggccggcgcatcctcaggcatgccgggcatcagtacggtgctctttttttttttttgaagtctcgcgcgcgtcgtgtttgcttgagcttttctcctctctctatctccccttgtgatgtgatgtggtggtgctctaatggtttgggggttttggggtctctctgcttgaagggctcgcgggggtgacgaactcggtgcactcgtatgatgtggacacgcgcaggtggacgaggtacgggcgctgctcgcgtttagattttgtttcatatggctgctcagaaatctagggtttagctcaatttccaggtctcctcatcccttggagtttatttgaggttcaatttcgtatattctgtgttatatagtcttttagggttatggtatacatggtgatgaaatcattgtcttatatttgtgctgtcgtgcgtttaggatgagaaatgcattccacccattcaactaatttgcttaacttggccgttaagggaaggaatgggattatgggttcaaataatcagggtttaagttcaattcttaatgacgcagattgcatccagctggagagcctccatcgccgagggctgcacatgctgcagctgccgtaggaacgatggttgttttccaggtatttggaacttgggatcttcgattttttgttcggtacctgtctacttacttctaattaattaattgtgagtgatgcaatgtttgcatagggtggtattggaccagcggggcactcgacagatgatctctatgttcttgacctgacaaacgacaagtttaaatggcacaggtgaatgttaaagacaccagcctttttgtttgcggatgcatttgccctttttgggcttatcattggatggatatgtgatgtctacatttctgccattggatgcagggttgttgttcagggggctgggcctggtcctcgctatggtcactgtatggatctggtagcccaacgttatcttgtaactgtctctggaaatgatggttagcccttcgatgctaaattctccaaatcagtgaattgtatttccataataatttttatggcgttccacctccttactatttatggaagtccattttgttttgactggcaagttgtaacactctaatgaatatacctgcttataagttttaactgcctgccagttagggctctccacaatagagtatttattaaacatatctatataacttgttccctaaacaaggacagtttctaacaaaagtgcatgcacccaagtggaagaggaaatatggcctgaatttcactcgcacttgttcaatttataaaaagaaaacatggaactagaacagtttctttggtacaaaaacgctttcactgcaaatatatatggacatttcagtaccttggctatccgtattcagtaacaaaactatagataacttgtctattattgttatagatttatagttcagccaactttttaagtagcctgaagttctcaacccattagaagatttcacatgggttgcttatttattgccttctaaaaggatttcgctagcatgttttggaataacttttaatagttgtcggacttgtcaaataatgtttcttttggtacaggaaagcgagtcttatcggatgcttgggctctggacacagcacagaaaccatataggtggcagaaacttaaccctgatggcgatagaccttcagcgagaatgtgagtcagtccactactttagagagcttcactgcatcagatcaattcacttttcattgttactacatatttgtttattttcttctatccagccccttgcgagtggtcaacctgacctcctttttagtagattggcaacctactatgtatttgttgtatttgactttcttggacaaactgcaaacggtctcatcttccaatattactccatgttggaaactgttgaatctttgttagccttgttttctagctatatttgcaagcactcttacattaaagaaaagaaggaaaaataactgtatagacgagcctgtattatgcatacaatctggtattttgtctttttacaggcttgtctgggtttgcttttcagtttcacgtaattcttctatgctataaaaaatgaaaatcaatatttttaaagctaatcaagggtccgatttttggcctgccactattccactaataataacgcttaattacttgtgaaatttagtgagagggataaagatagagcataaaagtactgttttataaccgtagtaacaatgttgagttctgcacataacactatggtaattgttctgacagcgtacaaataaatagtatgatgtatctggatgaaactcacagcataaatggcattgtaaattacagcatgtagcacttaattcagcatgcttttatgtaaaatgaaactagcacttcacaagtttcttaggtgtagccattgcatttaatttacactgtttgtataaacgtgcaatgtcttactttgtttcattctaaatcactgtaggtatgctactgccagtgcacgcaccgatggcatgcttttactttgcggtggaagggatgcttctgggatggtagtcttatgcttttgttactgtttgttagctctaaaatattctccttaggtcataatgtcatattatgtttttatatgatgttatgtgtcattgtttaactatggtctgctagtgcaagaacctcatatgcatatatggtgaatgaagatcatcgatggctttatgtaatgcatgagttctggtggctgagaacatccattcattatttagtacttcctctgtcccaaaatgttgctacctaaaccctaaaccagacaacgaatctggacagaggttttattcagattcgttgtctaggatgggtcaaatcccatcctagttagcaacattttgggacggaggtagtaatggattaatatattcttaggatagctcctacacatttaatatgctaattatcaatgctctcttcctaattatctatctttggaagttggaactttggaaggcaagcatttaaagatagcaaacgagcataactaaagagatgaaatctttaaatatagttaatggaattgaatcactgtttgttatggataatatcactagaatgaaaaaaaacatactctctctctctctctctctcttatcttcgagtggttctgcatcaagtattatagcaagttcttaagcatggtgttttagcatttttaatgtgttgtactgttatgcatattttataggcagtgggacttgtactaaaattaggattgctttatcatgccaatcaagttatctactacctccgttccaaaatatagcaacttttggctatgaatctagacacacagttgtccagattcatagctaaaaatgtttatattttgggacggaggaagtagttttattattataagatgctggttgaacattaggtttgtgtcattaaataattttatgttgagattaatttatgatacgtgcaatgtatgtgcagccactttctgatgcttatggactactaatgcatacaagtggccagtgggagtggacactagctccaggggtatctccatctccaagatatcagcatgcagctgtaagttaaccatacatgagagctgaatttctttatttgttgatgatgaattggtgctcagatggtgttaacgggttctcctggttggttggtttcagcaatgactttctttctttaaaatcttgcctcatatttattgatctaatttctgcactcaagcacatacaatattctgcttttcttatattgatggctcgtggtcatatgttttaggtctttgttggtgctcggttgcatgttactggtggagtccttagaggagggagagccattgagggagagggtgcaatagcaggtgagtttacctccttttgttcccacagctttcatatgcttatttctactctcttggactcaaccataccacactttctgaagttctggacactgctgctggagtttggttggatagaaatggcattgtgacctctcgcacattgaagtcttcacatgaccatgatgcttcttcggatctacttcgccgttgtcgtcatgcagctgcttctgttggaacgcagatatacatttatggtggtctgaggggaggtaactggttttggatgccattttcgtgattggctgcctcattttgtatttgtccatctgagaattggagaaaccttttcaaacaatactgtgaccattgttgtctgaactgtatttttccttttgctgtcactagatggcattactatacttaatatttgtttctcaatgtagtggggttggcagttgtcacctcgatgtgtttagtgtagacaatccacacatgtttagacaatcaaatttgtagtctggcaattttctaacagaattgaaatattccatttaactattcagcgttttagcaaggtacagatattagataatgatagaatttcctatttatatcaaggccacaaagtttttgtaagcaactgatgagtagatgggaaaatggcatgcttttcatttccgttactctgcattgttatatttcagtgtcaactgtggattattccaagttttactttttggtgtgatgattgatatatctccaaattcatgctgttgaaaatctaatatatgttcttttcaaacagatattctcctcgacgattttcttgttgctgataatgcacctatccaatcagaatttacttcatctatgtacgacagagtcccaagggcagaaaatcaaaatagaaaccacaattttaattcagattctcccactacaaataacaggcacgagatagcttctggtttcaggttccatactcatcttgtttaacgctacaagagttcctgcgttctaatgaactctaaataaattttccattgttttcagcacggacaagaagtccattgacatgttgacacaggcttcagctgccgaagctgaagctgttagtgctgtatggcgtgctgcacaggaagcatctcatgcatcttcagaagatagcctgtcagagggaataggatctgagtccccactcagtgaaacttcaccgatgcctgaggatttagacgatggaggctccctagaaccagatgtgaagctgcattcaagagcggtatgcattttgatgtttcctcccatttgcattcttaaagttgcaaacaattaaagcatcctcacacagttttggggtgtaatacaatcctttctttagtttttcatttttgaagcatcaaaaggcaattctggaaacatatgccctggcaggggatgtgtgtgtttttcgttgggggtgtggtttaacctccccgctacatgggttcaaatcctaggacctagttgtgcaccattctccttctttagttggtgcaacagctcctggccctttttagggtaattcataattttctgcagtattttgcgttgatctgttgagtggatgggttactttttcagtagaaattgtttggatcatagtagcatttaacctcaagaccaatttactcaacatttcaacactgcatgattgtaaaatgtcccctgtaatctattgatcttccgtttccctcttgtggtctaaatatctagtaatttcctcttgtggtacttccctctaaatcttatgatgtagaagcctcttaaattaaagttgggcagttggctgatttctttcctaatgcattctgtttgttttgttgatttcaatcaagctactgcagtatattgatcctaaatcctgaattcccaataccgttttgaaggttgtagtttctaaagaagcagtaggagatttgggatgtttggtccgacagctttcattggaccaatttgagaatgaaagcagaagaatgcatccctcaagcaatgatcaatcatatccagccaagaaagcattaaacagacaaaggtccccacaaggtttgcataagaaggtaagttccaatctttaatttctcagtttgttggaagaacaatttccctaactttctttttgttgcaggttatttcgttcttacttaagccaaggaattggagggctcccgctgaaagggcttttttccttgattcatacgaagttggcgagctatgttatgctgctgagcagatttttatgcaggagccaactgttttacaattaaaagcaccaattaaagtatttggtgatcttcatgggcagtttggggacctaatgcgcctttttgatgaatatggttatccatcaactgctggtgatataacgttagttgcttctgaactttttaatcatattttgttttcaaagcctactagagtgtactagatgtttccaaatatatccatttttttctgttgttatatccttccaaatactttgaacacgtgcttttctttgtctaaacacctgtttctatttttcttaggtatattgattatctcttcttgggagactatgttgaccgaggtcagcacagcttggaaacaataacattgcttcttgctcttaaagtgagtctttatttctggtaattgaaatacattgattgccacaacactattgtcatgaagttatttctgagccattgaaaacatatcctgcagatagagtaccctgaaaacgtccacttgattaggggaaatcacgaggctgctgacatcaatgcactttttgggttccgccttgaatgcatagagagaatggtagttattataatacttaatacatatttgaactatagaagttttttgatgtggtaattgtcttaactcttatgcagggtgaaagtgatggcatatgggcttggacaagattcaatcaactgtttaattatctcccacttgctgccatgatagaaaagaaaataatttgcatgcatggtggcattggaaggtcaataaacactatcgagcaaatcgagaaacttgaacggcctatcacaatggatgttggatctattattctcatggaccttttatggtacctattcttattttgttgtcttctacattcatctgtatatgacaattcatgagtactttccttgtataaatacaggtccgatcctacagaaaatgatagtgtggagggtttgagaccaaatgcacgagggcctggcttggtgacatttggggtatgatatgataattgagctctcctactatgctcgttgttttccttttaagtttgagtgctagcaacatcaaattaaactacacatgcttctttttttatgaaataaatcatactgtaatctgcttgttaaactttttcctgtctactttgcagcctgatcgagtgactgaattctgtaaacgaaacagattgcaactaatcataagagctcatgagtgtgttatggatgggtttgagcgttttgctcatgggcaattgataactttattttcagccactaactattgtggtatgtctcctctaacttcctttgttacctatgcaagtatgcaaccaagttttttgctaagaccatgcgtgcaccaggtactgcaaacaacgctggggccatacttgtggtgggcaggggactagttattgttccaaagttaattcatccacttcctccaccagttaattctccagagtcttccccagaacgtgccatggacgccacatggatgcaggttagaatgagtatttctttcttctcatttctctagtgagataaggcaaggcacaacttgattgtgagcaacaactttttatcaacagcattaggttctgattcatctaaaaaaactcaacattaggctctgaatgtatggctcatttaatgatttgtttgcacaatttctgatcatatgcaggaacttaacatacaacggccacctacaccaactagaggacggccacagtctgctagtgacagaaattctcttgcttatatatgatacatcgttgaaccacctccagcttcttgatccatgtttcttgacggaaatctctttaccagtcacaaggtacatacattatacatccaaacaacctgcagccgagcatcacatcacaggccccctgtttgtcgaaggtgttcatctggtgattagttcattgtgacgcttcagtgttcagtgtagttgatatgacttcatctcctcggttggaagctacacaaccgttcagagcttcaaatcgtaagcgaagctatgtgcttcccggtccctctcatctacaccaattttaaaggacagaatggaatgatgagcaaataatcgagttgtatgtactttgggtggtttacctgtaactttagtgtacatgattagttcattgtttactcaggagtaagaaggttgtaatgactgtacaccatgtccccagtgtgggacgctgctttgcacagcgcagctatacaaggttgtcgaagttagattggacggggagctttgaggctttatcccgtcgctcgttgtagagcgtgatgaatgtttgtaagcgaaccgtgttgtgattaattaaatttataggtgtgtgaacaataaattatgttgtgcttagatc</dnaseqindica>|
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| − | Link = [http://www.ncbi.nlm.nih.gov/nuccore/NM_001061160.1 RefSeq:Os05g0144400]|
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| − | }}
| |
| − | [[Category:Genes]] | |
| − | [[Category:Japonica mRNA]]
| |
| − | [[Category:Oryza Sativa Japonica Group]] | |
| − | [[Category:Japonica Genes]] | |
| − | [[Category:Japonica Chromosome 5]]
| |
| − | [[Category:Chromosome 5]]
| |
